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(-) Description

Title :  CRYSTAL STRUCTURE OF GES-14
 
Authors :  H. Delbruck, K. M. V. Hoffmann, C. Bebrone
Date :  13 Sep 11  (Deposition) - 26 Sep 12  (Release) - 19 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Beta Lactamase Fold, Hydrolase, Beta Lactams (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Delbruck, P. Bogaerts, M. B. Kupper, R. Rezende De Castro, S. Bennink, Y. Glupczynski, M. Galleni, K. M. Hoffmann, C. Bebrone
Kinetic And Crystallographic Studies Of Extended-Spectrum Ges-11, Ges-12, And Ges-14 Beta-Lactamases.
Antimicrob. Agents Chemother. V. 56 5618 2012
PubMed-ID: 22908160  |  Reference-DOI: 10.1128/AAC.01272-12

(-) Compounds

Molecule 1 - EXTENDED-SPECTRUM BETA-LACTAMASE GES-14
    Chains: A, B
    EC Number: 3.5.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A/BLAGES-14
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: BLAGES-14
    Organism Scientific: ACINETOBACTER BAUMANNII
    Organism Taxid: 470

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 66)

Asymmetric Unit (2, 66)
No.NameCountTypeFull Name
1GOL11Ligand/IonGLYCEROL
2IOD55Ligand/IonIODIDE ION
Biological Unit 1 (2, 34)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2IOD30Ligand/IonIODIDE ION
Biological Unit 2 (2, 32)
No.NameCountTypeFull Name
1GOL7Ligand/IonGLYCEROL
2IOD25Ligand/IonIODIDE ION

(-) Sites  (60, 60)

Asymmetric Unit (60, 60)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:92 , GLN B:145BINDING SITE FOR RESIDUE IOD A 288
02AC2SOFTWAREALA B:57BINDING SITE FOR RESIDUE IOD A 289
03AC3SOFTWAREGOL B:315BINDING SITE FOR RESIDUE IOD A 290
04AC4SOFTWARETHR A:177BINDING SITE FOR RESIDUE IOD A 291
05AC5SOFTWARESER A:125 , THR A:230BINDING SITE FOR RESIDUE IOD A 292
06AC6SOFTWAREARG A:204 , HOH B:380BINDING SITE FOR RESIDUE IOD A 295
07AC7SOFTWARETHR B:177BINDING SITE FOR RESIDUE IOD A 296
08AC8SOFTWARETHR A:113BINDING SITE FOR RESIDUE IOD A 297
09AC9SOFTWARESER A:196BINDING SITE FOR RESIDUE IOD A 298
10BC1SOFTWAREARG A:105 , GLN B:210BINDING SITE FOR RESIDUE IOD A 300
11BC2SOFTWAREGLU A:98BINDING SITE FOR RESIDUE IOD A 301
12BC3SOFTWARESER A:273 , HOH A:432BINDING SITE FOR RESIDUE IOD A 302
13BC4SOFTWAREARG A:84 , LYS A:88BINDING SITE FOR RESIDUE IOD A 303
14BC5SOFTWARELYS A:222BINDING SITE FOR RESIDUE IOD A 305
15BC6SOFTWARESER A:90BINDING SITE FOR RESIDUE IOD A 307
16BC7SOFTWAREASP A:250BINDING SITE FOR RESIDUE IOD A 308
17BC8SOFTWAREGLN A:47BINDING SITE FOR RESIDUE IOD A 309
18BC9SOFTWAREHOH A:409BINDING SITE FOR RESIDUE IOD A 311
19CC1SOFTWARELYS A:160 , GLU A:163 , HOH A:426 , HOH A:455BINDING SITE FOR RESIDUE IOD A 312
20CC2SOFTWAREARG A:173 , LYS A:261BINDING SITE FOR RESIDUE IOD A 313
21CC3SOFTWARELYS A:261BINDING SITE FOR RESIDUE IOD A 314
22CC4SOFTWAREARG A:183 , LYS A:187BINDING SITE FOR RESIDUE IOD A 315
23CC5SOFTWAREARG A:183 , ARG B:183 , IOD B:311BINDING SITE FOR RESIDUE IOD A 316
24CC6SOFTWAREGLU A:98 , TRP A:99BINDING SITE FOR RESIDUE IOD A 317
25CC7SOFTWAREALA A:102 , PHE A:106 , GLU A:116 , GLN A:119 , ALA A:120 , HOH A:344 , HOH A:390 , HOH A:400 , GLN B:123BINDING SITE FOR RESIDUE GOL A 318
26CC8SOFTWARELEU A:124 , GLN A:210 , HOH A:401BINDING SITE FOR RESIDUE GOL A 319
27CC9SOFTWAREPRO A:93 , HOH A:340 , HOH A:375 , HOH A:382 , HOH A:442 , ARG B:77 , GLU B:136 , ILE B:137 , IOD B:297 , HOH B:449 , HOH B:457BINDING SITE FOR RESIDUE GOL A 320
28DC1SOFTWAREGLN A:145 , ARG A:148BINDING SITE FOR RESIDUE GOL A 321
29DC2SOFTWAREGOL B:318BINDING SITE FOR RESIDUE IOD B 288
30DC3SOFTWAREARG B:59BINDING SITE FOR RESIDUE IOD B 289
31DC4SOFTWAREGLY B:92BINDING SITE FOR RESIDUE IOD B 290
32DC5SOFTWAREARG B:204 , GOL B:316BINDING SITE FOR RESIDUE IOD B 291
33DC6SOFTWAREALA A:57 , HIS B:54 , ARG B:55BINDING SITE FOR RESIDUE IOD B 292
34DC7SOFTWARETRP B:224 , HOH B:369BINDING SITE FOR RESIDUE IOD B 293
35DC8SOFTWARESER B:125 , THR B:230BINDING SITE FOR RESIDUE IOD B 294
36DC9SOFTWAREGLN B:247BINDING SITE FOR RESIDUE IOD B 295
37EC1SOFTWARESER B:90 , ARG B:249BINDING SITE FOR RESIDUE IOD B 296
38EC2SOFTWAREGOL A:320 , LYS B:222BINDING SITE FOR RESIDUE IOD B 297
39EC3SOFTWAREGLU B:98BINDING SITE FOR RESIDUE IOD B 298
40EC4SOFTWAREGLN A:210 , ARG B:105BINDING SITE FOR RESIDUE IOD B 299
41EC5SOFTWARETHR B:113BINDING SITE FOR RESIDUE IOD B 300
42EC6SOFTWARELYS B:222BINDING SITE FOR RESIDUE IOD B 301
43EC7SOFTWARELYS A:21 , ARG B:59 , ARG B:156 , LEU B:172BINDING SITE FOR RESIDUE IOD B 302
44EC8SOFTWAREHOH B:427BINDING SITE FOR RESIDUE IOD B 303
45EC9SOFTWAREARG B:173BINDING SITE FOR RESIDUE IOD B 304
46FC1SOFTWAREHOH B:450BINDING SITE FOR RESIDUE IOD B 305
47FC2SOFTWAREGLU B:20BINDING SITE FOR RESIDUE IOD B 306
48FC3SOFTWARELYS B:187BINDING SITE FOR RESIDUE IOD B 307
49FC4SOFTWAREGLN B:47BINDING SITE FOR RESIDUE IOD B 308
50FC5SOFTWARESER B:196BINDING SITE FOR RESIDUE IOD B 309
51FC6SOFTWAREGLU B:266 , HOH B:387BINDING SITE FOR RESIDUE IOD B 310
52FC7SOFTWAREARG A:183 , IOD A:316 , ARG B:183BINDING SITE FOR RESIDUE IOD B 311
53FC8SOFTWAREGLU B:34BINDING SITE FOR RESIDUE IOD B 312
54FC9SOFTWAREASP B:45 , PRO B:46 , ARG B:249 , ASP B:250 , HOH B:410BINDING SITE FOR RESIDUE GOL B 313
55GC1SOFTWAREGLN A:123 , GLU B:116 , GLN B:119 , ALA B:120 , HOH B:376 , HOH B:393BINDING SITE FOR RESIDUE GOL B 314
56GC2SOFTWAREALA A:57 , IOD A:290 , LYS B:21 , LYS B:25 , ALA B:52 , GLY B:53BINDING SITE FOR RESIDUE GOL B 315
57GC3SOFTWAREGLU B:203 , LYS B:245 , ASP B:250 , IOD B:291 , GOL B:317BINDING SITE FOR RESIDUE GOL B 316
58GC4SOFTWAREHOH A:394 , ARG B:135 , GLU B:136 , VAL B:225 , LYS B:245 , GLU B:248 , GOL B:316 , HOH B:355 , HOH B:377BINDING SITE FOR RESIDUE GOL B 317
59GC5SOFTWAREARG B:159 , LYS B:160 , GLU B:163 , IOD B:288BINDING SITE FOR RESIDUE GOL B 318
60GC6SOFTWARETHR A:195 , SER A:196 , THR A:197 , GLU B:32 , ARG B:33 , ALA B:37BINDING SITE FOR RESIDUE GOL B 319

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:63 -A:233
2B:63 -B:233

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Glu A:161 -Pro A:162
2Glu B:161 -Pro B:162

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3TSG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3TSG)

(-) Exons   (0, 0)

(no "Exon" information available for 3TSG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:266
 aligned with D3X610_ACIBA | D3X610 from UniProtKB/TrEMBL  Length:287

    Alignment length:266
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278      
         D3X610_ACIBA    19 SEKLTFKTDLEKLEREKAAQIGVAIVDPQGEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSPATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREIGGPAAMTQYFRKIGDSVSRLDRKEPEMSDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATLRAGFPKDWVVGEKTGTCANGARNDIGFFKAQERDYAVAVYTTAPKLSAVERDELVASVGQVITQLILS 284
               SCOP domains d3tsga_ A: automated matches                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh.eeeeeee.....eeeee.....ee.hhhhhhhhhhhhhhhhhh.......eee.hhhhh...hhhhhhhh...eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh........eehhhhhhhhhhhhhhh...hhhhhhhhhhhhhh......hhhhhh....eeeeeeeee...eeeeeeeeee..eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tsg A  19 SEKLTFKTDLEKLEREKAAQIGVAIVDPQGEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSPATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREIGGPAAMTQYFRKIGDSVSRLDRKEPEMSDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATLRAGFPKDWVVGEKTGTCANGARNDIGFFKAQERDYAVAVYTTAPKLSAVERDELVASVGQVITQLILS 284
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278      


Chain B from PDB  Type:PROTEIN  Length:266
 aligned with D3X610_ACIBA | D3X610 from UniProtKB/TrEMBL  Length:287

    Alignment length:266
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278      
         D3X610_ACIBA    19 SEKLTFKTDLEKLEREKAAQIGVAIVDPQGEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSPATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREIGGPAAMTQYFRKIGDSVSRLDRKEPEMSDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATLRAGFPKDWVVGEKTGTCANGARNDIGFFKAQERDYAVAVYTTAPKLSAVERDELVASVGQVITQLILS 284
               SCOP domains d3tsgb_ B: automated matches                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.eeeeeee.....eeeee.....ee.hhhhhhhhhhhhhhhhhhh......eee.hhhhh...hhhhhhhh...eeehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh........eehhhhhhhhhhhhhhh...hhhhhhhhhhhhhh......hhhhhh....eeeeeeeee...eeeeeeeeee..eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tsg B  19 SEKLTFKTDLEKLEREKAAQIGVAIVDPQGEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSPATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREIGGPAAMTQYFRKIGDSVSRLDRKEPEMSDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATLRAGFPKDWVVGEKTGTCANGARNDIGFFKAQERDYAVAVYTTAPKLSAVERDELVASVGQVITQLILS 284
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3TSG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3TSG)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (D3X610_ACIBA | D3X610)
molecular function
    GO:0008800    beta-lactamase activity    Catalysis of the reaction: a beta-lactam + H2O = a substituted beta-amino acid.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
    GO:0030655    beta-lactam antibiotic catabolic process    The chemical reactions and pathways resulting in the breakdown of a beta-lactam antibiotic, any member of a class of natural or semisynthetic antibiotics whose characteristic feature is a strained, four-membered beta-lactam ring. They include the penicillins and many of the cephalosporins.
    GO:0046677    response to antibiotic    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.

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2qpn HOMOLOG STRUCTURE