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(-) Description

Title :  STRUCTURE OF AN ALPHA-BETA SERINE HYDROLASE HOMOLOGUE FROM COXIELLA BURNETII
 
Authors :  J. Cheung, M. C. Franklin, M. Rudolph, M. Cassidy, E. Gary, F. Burshteyn
Date :  09 Sep 11  (Deposition) - 21 Sep 11  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Cellular Processes, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. C. Franklin, J. Cheung, M. J. Rudolph, F. Burshteyn, M. Cassidy, E. Gary, B. Hillerich, Z. K. Yao, P. R. Carlier, M. Totrov, J. D. Love
Structural Genomics For Drug Design Against The Pathogen Coxiella Burnetii.
Proteins V. 83 2124 2015
PubMed-ID: 26033498  |  Reference-DOI: 10.1002/PROT.24841

(-) Compounds

Molecule 1 - ALPHA/BETA HYDROLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CBU_1769
    Organism Scientific: COXIELLA BURNETII
    Organism Taxid: 777

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2NA2Ligand/IonSODIUM ION
3PO42Ligand/IonPHOSPHATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:-1 , HIS A:37 , SER A:110 , PHE A:136 , TYR A:137 , VAL A:160 , SER A:183 , NA A:208 , HOH A:320BINDING SITE FOR RESIDUE ACT A 206
2AC2SOFTWARETHR A:43 , ASN A:45 , HOH A:289 , HOH A:428 , HOH A:451BINDING SITE FOR RESIDUE ACT A 207
3AC3SOFTWARETYR A:-1 , HIS A:37 , SER A:110 , PHE A:111 , ACT A:206BINDING SITE FOR RESIDUE NA A 208
4AC4SOFTWAREGLY A:70 , GLY A:72 , SER A:74 , HOH A:253 , HOH A:333 , HOH A:354BINDING SITE FOR RESIDUE NA A 209
5AC5SOFTWARESER A:-2 , TYR A:-1 , ASN A:46 , LYS A:47 , HOH A:248 , HOH A:274 , HOH A:304 , HOH A:366 , HOH A:444 , HOH A:448BINDING SITE FOR RESIDUE PO4 A 210
6AC6SOFTWARESER A:-2 , ARG A:21 , GLU A:26 , GLY A:41 , LYS A:62 , TRP A:99 , HOH A:215 , HOH A:237 , HOH A:238 , HOH A:267 , HOH A:378 , HOH A:405BINDING SITE FOR RESIDUE PO4 A 211

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3TRD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3TRD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 3TRD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:208
 aligned with Q83AV9_COXBU | Q83AV9 from UniProtKB/TrEMBL  Length:205

    Alignment length:208
                               1                                                                                                                                                                                                            
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197        
         Q83AV9_COXBU     - ---MTNEDFLIQGPVGQLEVMITRPKGIEKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGVGKSQGRYDNGVGEVEDLKAVLRWVEHHWSQDDIWLAGFSFGAYISAKVAYDQKVAQLISVAPPVFYEGFASLTQMASPWLIVQGDQDEVVPFEQVKAFVNQISSPVEFVVMSGASHFFHGRLIELRELLVRNLA 205
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee....eeeeeee........eeeeee..hhhhh....hhhhhhhhhhhhhh..eeeee...............hhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhh...eeeee.....hhhhh........eeeeee......hhhhhhhhhhhh....eeeee.........hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3trd A  -2 SYVMTNEDFLIQGPVGQLEVMITRPKGIEKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGVGKSQGRYDNGVGEVEDLKAVLRWVEHHWSQDDIWLAGFSFGAYISAKVAYDQKVAQLISVAPPVFYEGFASLTQMASPWLIVQGDQDEVVPFEQVKAFVNQISSPVEFVVMSGASHFFHGRLIELRELLVRNLA 205
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3TRD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3TRD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3TRD)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q83AV9_COXBU | Q83AV9)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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