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(-) Description

Title :  STRUCTURE OF A ABC TRANSPORTER, PERIPLASMIC SUBSTRATE-BINDING PROTEIN FROM COXIELLA BURNETII
 
Authors :  J. Cheung, M. C. Franklin, M. Rudolph, M. Cassidy, E. Gary, F. Burshteyn
Date :  09 Sep 11  (Deposition) - 21 Sep 11  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transport And Binding Proteins, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. C. Franklin, J. Cheung, M. J. Rudolph, F. Burshteyn, M. Cassidy, E. Gary, B. Hillerich, Z. K. Yao, P. R. Carlier, M. Totrov, J. D. Love
Structural Genomics For Drug Design Against The Pathogen Coxiella Burnetii.
Proteins V. 83 2124 2015
PubMed-ID: 26033498  |  Reference-DOI: 10.1002/PROT.24841

(-) Compounds

Molecule 1 - METHIONINE-BINDING PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CBU_0109
    Organism Scientific: COXIELLA BURNETII
    Organism Taxid: 777

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric Unit (3, 15)
No.NameCountTypeFull Name
1MET2Ligand/IonMETHIONINE
2MSE12Mod. Amino AcidSELENOMETHIONINE
3SO41Ligand/IonSULFATE ION
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
1MET1Ligand/IonMETHIONINE
2MSE6Mod. Amino AcidSELENOMETHIONINE
3SO4-1Ligand/IonSULFATE ION
Biological Unit 2 (3, 8)
No.NameCountTypeFull Name
1MET1Ligand/IonMETHIONINE
2MSE6Mod. Amino AcidSELENOMETHIONINE
3SO41Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:11 , TYR A:38 , PHE A:55 , HIS A:57 , TYR A:60 , ASN A:110 , ARG A:113 , ASN A:169 , ASN A:171 , ASN A:196 , HOH A:254 , HOH A:255 , HOH A:270 , HOH A:298BINDING SITE FOR RESIDUE MET A 238
2AC2SOFTWARESER B:215 , HIS B:218 , HOH B:353BINDING SITE FOR RESIDUE SO4 B 238
3AC3SOFTWAREGLU B:11 , TYR B:38 , PHE B:55 , HIS B:57 , TYR B:60 , ASN B:110 , ARG B:113 , ASN B:169 , ASN B:171 , ASN B:196 , HOH B:285 , HOH B:289 , HOH B:332 , HOH B:408BINDING SITE FOR RESIDUE MET B 239

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3TQW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3TQW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3TQW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3TQW)

(-) Exons   (0, 0)

(no "Exon" information available for 3TQW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:235
 aligned with Q83F42_COXBU | Q83F42 from UniProtKB/TrEMBL  Length:267

    Alignment length:237
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       
         Q83F42_COXBU    29 EVRVGTIAGPETQLMEVAKQVALNRYGLHVNIITFSDYNTPNEALADGSVDANMFQHLPYLKAQIEMRGYKIVSIGKTFVYPMGLYSKKITALTQLKTGAKIAVPSDPSNEARALLLLEKAQLIQLKTHVTINATPMDIASNPKKLKIVELDAAQLSRSLGDVDLAAINTNYAIPAGLSPSRDALLTEGPNSPYANVVAVREDDKNDPRLKQLVSALHSPAVLSAAKKIFGDGAIPA 265
               SCOP domains d3tqwa_ A: automated matches                                                                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhhhhhhhhhhhhhhhhhh..eeeeee....hhhhhhhh....eee..hhhhhhhhhhhhh..eeeeeeeee...eee.....hhhhh....eeeee.hhhhhhhhhhhhhhh...ee...--...hhh.eee.....eeeeehhhhhhhh.....eeeehhhhhhhhh........ee.......eeeeeee.hhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tqw A   1 mVRVGTIAGPETQLmEVAKQVALNRYGLHVNIITFSDYNTPNEALADGSVDANmFQHLPYLKAQIEmRGYKIVSIGKTFVYPmGLYSKKITALTQLKTGAKIAVPSDPSNEARALLLLEKAQLIQLKTH--INATPmDIASNPKKLKIVELDAAQLSRSLGDVDLAAINTNYAIPAGLSPSRDALLTEGPNSPYANVVAVREDDKNDPRLKQLVSALHSPAVLSAAKKIFGDGAIPA 237
                            |       10    |   20        30        40        50   |    60      | 70        80  |     90       100       110       120        |- |    |140       150       160       170       180       190       200       210       220       230       
                            |            15-MSE                                 54-MSE       67-MSE          83-MSE                                       129  |    |                                                                                                    
                            1-MSE                                                                                                                            132    |                                                                                                    
                                                                                                                                                                  137-MSE                                                                                                


Chain B from PDB  Type:PROTEIN  Length:233
 aligned with Q83F42_COXBU | Q83F42 from UniProtKB/TrEMBL  Length:267

    Alignment length:237
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       
         Q83F42_COXBU    29 EVRVGTIAGPETQLMEVAKQVALNRYGLHVNIITFSDYNTPNEALADGSVDANMFQHLPYLKAQIEMRGYKIVSIGKTFVYPMGLYSKKITALTQLKTGAKIAVPSDPSNEARALLLLEKAQLIQLKTHVTINATPMDIASNPKKLKIVELDAAQLSRSLGDVDLAAINTNYAIPAGLSPSRDALLTEGPNSPYANVVAVREDDKNDPRLKQLVSALHSPAVLSAAKKIFGDGAIPA 265
               SCOP domains d3tqwb_ B: automated matches                                                                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhhhhhhhhhhhhhhhhhh..eeeeee....hhhhhhhh....eee..hhhhhhhhhhhhh..eeeeeeeee...eee.....hhhhh....eeeee.hhhhhhhhhhhhhhh...ee..----..hhh.eee.....eeeeehhhhhhhhh....eeeehhhhhh...........ee.......eeeeeee.hhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tqw B   1 mVRVGTIAGPETQLmEVAKQVALNRYGLHVNIITFSDYNTPNEALADGSVDANmFQHLPYLKAQIEmRGYKIVSIGKTFVYPmGLYSKKITALTQLKTGAKIAVPSDPSNEARALLLLEKAQLIQLKT----NATPmDIASNPKKLKIVELDAAQLSRSLGDVDLAAINTNYAIPAGLSPSRDALLTEGPNSPYANVVAVREDDKNDPRLKQLVSALHSPAVLSAAKKIFGDGAIPA 237
                            |       10    |   20        30        40        50   |    60      | 70        80  |     90       100       110       120       | -  |   |140       150       160       170       180       190       200       210       220       230       
                            1-MSE        15-MSE                                 54-MSE       67-MSE          83-MSE                                      128  133   |                                                                                                    
                                                                                                                                                                  137-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3TQW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3TQW)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3TQW)

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