3TQE - JenaLib

Title :   STRUCTURE OF THE MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE (FABD) FROM COXIELLA BURNETII

Authors :   M. C. Franklin, J. Cheung, M. Rudolph, M. Cassidy, E. Gary, F. Burshteyn

Date :   09 Sep 11 (Deposition) - 21 Sep 11 (Release) - 27 Jan 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.50

Chains :   Asym./Biol. Unit : A

Keywords :   Fatty Acid/Phospholipid Metabolism, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. C. Franklin, J. Cheung, M. J. Rudolph, F. Burshteyn, M. Cassidy, E. Gary, B. Hillerich, Z. K. Yao, P. R. Carlier, M. Totrov, J. D. Love
Structural Genomics For Drug Design Against The Pathogen Coxiella Burnetii.
Proteins V. 83 2124 2015
PubMed-ID: 26033498 | Reference-DOI: 10.1002/PROT.24841

Compounds

Molecule 1 - MALONYL-COA-[ACYL-CARRIER-PROTEIN] TRANSACYLASE
	Chains	:	A
	EC Number	:	2.3.1.39
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	CBU_0494, FABD
	Organism Scientific	:	COXIELLA BURNETII
	Organism Taxid	:	777

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 11)

Asymmetric/Biological Unit (3, 11)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
2	GLY	2	Mod. Amino Acid	GLYCINE
3	MSE	8	Mod. Amino Acid	SELENOMETHIONINE

Sites (3, 3)

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLN A:12 , SER A:93 , ARG A:118 , MSE A:122 , SER A:201 , HIS A:202 , HOH A:348	BINDING SITE FOR RESIDUE GLY A 314
2	AC2	SOFTWARE	SER A:221 , ILE A:222 , ALA A:241 , ARG A:245 , HOH A:496 , HOH A:516	BINDING SITE FOR RESIDUE GLY A 315
3	AC3	SOFTWARE	ARG A:76 , VAL A:101 , HOH A:378 , HOH A:630	BINDING SITE FOR RESIDUE EDO A 316

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:318
 aligned with Q83E39_COXBU | Q83E39 from UniProtKB/TrEMBL  Length:313

    Alignment length:318
                               1                                                                                                                                                                                                                                                                                                                     313  
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     |  
         Q83E39_COXBU     - ---MPQSFAFVFPGQGSQHLGMLAELGLQQPIVLETFQQASSALAYDLWALVQHGPQERLDQTQFTQPALLTADVAIFRCWEALGGPKPQVMAGHSLGEYAALVCAGALKFEEAVKLVEKRGQYMQEAVPVGEGAMGAIIGLNEAEIESICENAALGQVVQPANLNSTDQTVISGHSEAVDRALNMAKTEGAKIAKRIPVSVPSHCPLMQPAADRLAQDIAKISIDSPKVPVIHNVDVVDHNEANIIRGALIKQLVRPVRWVETIKYIEEQGIKVFMECGPDNKLAGLIKRIDRQSEILPLTTTELILTAIKRLTH--   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eeee..........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee.hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhh...eeeeeeee..eeeeeeehhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhh...eehhhhhhhhhhh...eeee....hhhhhhhhhhh...eeee..hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3tqe A  -2 SYVmPQSFAFVFPGQGSQHLGmLAELGLQQPIVLETFQQASSALAYDLWALVQHGPQERLDQTQFTQPALLTADVAIFRCWEALGGPKPQVmAGHSLGEYAALVCAGALKFEEAVKLVEKRGQYmQEAVPVGEGAmGAIIGLNEAEIESICENAALGQVVQPANLNSTDQTVISGHSEAVDRALNmAKTEGAKIAKRIPVSVPSHCPLmQPAADRLAQDIAKISIDSPKVPVIHNVDVVDHNEANIIRGALIKQLVRPVRWVETIKYIEEQGIKVFmECGPDNKLAGLIKRIDRQSEILPLTTTELILTAIKRLTHGG 315
                               |     7        17 |      27        37        47        57        67        77        87 |      97       107       117    |  127     | 137       147       157       167       177     | 187       197       207       217       227       237       247       257       267      |277       287       297       307        
                               |                19-MSE                                                                89-MSE                          122-MSE    133-MSE                                           183-MSE                206-MSE                                                             274-MSE                                     
                               1-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (5, 5)

Visualization

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Asymmetric/Biological Unit
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	Ligands, Modified Residues, Ions
		EDO	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		GLY	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Gly A:52 - Pro A:53	[ RasMol ]

Still Images

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	3tqe
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Description