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(-) Description

Title :  CRYSTAL STRUCTURE OF ANABOLIC ORNITHINE CARBAMOYLTRANSFERASE FROM CAMPYLOBACTER JEJUNI SUBSP. JEJUNI NCTC 11168
 
Authors :  I. G. Shabalin, O. Onopriyenko, S. Grimshaw, P. J. Porebski, M. Grabows A. Savchenko, M. Chruszcz, W. F. Anderson, W. Minor, Center For Stru Genomics Of Infectious Diseases (Csgid)
Date :  07 Sep 11  (Deposition) - 21 Sep 11  (Release) - 12 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Rossmann Fold, Transferase, Carbamoyl Phosphate Binding, L-Ornithine Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. G. Shabalin, P. J. Porebski, D. R. Cooper, M. Grabowski, O. Onopriyenko, S. Grimshaw, A. Savchenko, M. Chruszcz, W. Minor
Structure Of Anabolic Ornithine Carbamoyltransferase From Campylobacter Jejuni At 2. 7 A Resolution.
Acta Crystallogr. , Sect. F V. 68 1018 2012
PubMed-ID: 22949186  |  Reference-DOI: 10.1107/S1744309112031259

(-) Compounds

Molecule 1 - ORNITHINE CARBAMOYLTRANSFERASE
    Chains: A, B, C, D, E, F
    EC Number: 2.1.3.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P15TV LIC
    Expression System Strain: BL21-CODONPLUS(DE3)-RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ARGF, CJ0994C
    Organism Scientific: CAMPYLOBACTER JEJUNI SUBSP. JEJUNI
    Organism Taxid: 192222
    Strain: NCTC 11168
    Synonym: OTCASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 80)

Asymmetric Unit (2, 80)
No.NameCountTypeFull Name
1MSE77Mod. Amino AcidSELENOMETHIONINE
2PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (2, 41)
No.NameCountTypeFull Name
1MSE39Mod. Amino AcidSELENOMETHIONINE
2PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 2 (2, 39)
No.NameCountTypeFull Name
1MSE38Mod. Amino AcidSELENOMETHIONINE
2PEG1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP B:138BINDING SITE FOR RESIDUE PEG B 307

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3TPF)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Leu A:261 -Pro A:262
2Leu B:261 -Pro B:262
3Leu C:261 -Pro C:262
4Leu D:261 -Pro D:262
5Leu E:261 -Pro E:262
6Leu F:261 -Pro F:262

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3TPF)

(-) PROSITE Motifs  (1, 6)

Asymmetric Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CARBAMOYLTRANSFERASEPS00097 Aspartate and ornithine carbamoyltransferases signature.OTCA_CAMJE42-49
 
 
 
 
 		  6A:42-49
B:42-49
C:42-49
D:42-49
E:42-49
F:42-49
Biological Unit 1 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CARBAMOYLTRANSFERASEPS00097 Aspartate and ornithine carbamoyltransferases signature.OTCA_CAMJE42-49
 
 
 
 
 		  3A:42-49
B:42-49
C:42-49
-
-
-
Biological Unit 2 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CARBAMOYLTRANSFERASEPS00097 Aspartate and ornithine carbamoyltransferases signature.OTCA_CAMJE42-49
 
 
 
 
 		  3-
-
-
D:42-49
E:42-49
F:42-49

(-) Exons   (0, 0)

(no "Exon" information available for 3TPF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:303
 aligned with OTCA_CAMJE | Q9PNU6 from UniProtKB/Swiss-Prot  Length:306

    Alignment length:303
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300   
           OTCA_CAMJE     1 MKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAMIFEKNSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNKHETLLEFARYSKAPVINALSELYHPTQVLGDLFTIKEWNKMQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEKHADVIFEEARNRLYVVKALLCFLDNQR 303
               SCOP domains d3tpfa1 A:1-142 automated matches                                                                                                             d3tpfa2 A:143-303 automated matches                                                                                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhh........eeeeee...hhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhh.eeeee..hhhhhhhhhhhh...eee......hhhhhhhhhhhhhhh..hhhhh.eeeee...hhhhhhhhhhhhhhh.eeeee.......hhhhhhhhhhhhhhhh.eeeee.hhhhhhh...eeee......hhhhhhhhhhhhhhhhh.hhhhhhhh....eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------CARBAMOY-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tpf A   1 mKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAmIFEKNSTRTRmAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAmVDFVmmRVNKHETLLEFARYSKAPVINALSELYHPTQVLGDLFTIKEWNKmQNGIAKVAFIGDSNNmCNSWLITAAILGFEISIAmPKNYKISPEIWEFAmKQALISGAKISLGYDKFEALKDKDVVITDTWVSmGEENEKERKIKEFEGFmIDEKAmSVANKDAILLHCLPAYRGYEVSEEIFEKHADVIFEEARNRLYVVKALLCFLDNQR 303
                            |       10        20        30        40        50|       60        70        80        90    || 100       110       120       130       140|      150      |160       170     | 180       190|      200       210       220    |  230       240 |     250       260       270       280       290       300   
                            |                                     40-MSE     51-MSE                                 90-MSE||                                          141-MSE         157-MSE            176-MSE        191-MSE                           225-MSE          242-MSE |                                                       
                            1-MSE                                                                                        95-MSE                                                                                                                                                  248-MSE                                                   
                                                                                                                          96-MSE                                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:305
 aligned with OTCA_CAMJE | Q9PNU6 from UniProtKB/Swiss-Prot  Length:306

    Alignment length:305
                             1                                                                                                                                                                                                                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299     
           OTCA_CAMJE     - -MKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAMIFEKNSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNKHETLLEFARYSKAPVINALSELYHPTQVLGDLFTIKEWNKMQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEKHADVIFEEARNRLYVVKALLCFLDNQRG 304
               SCOP domains d3tpfb1 B:0-142 automated matches                                                                                                              d3tpfb2 B:143-304 automated matches                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhh........eeeeee...hhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhh.eeeee..hhhhhhhhhhhh...eee......hhhhhhhhhhhhhhh..hhhhh.eeeee...hhhhhhhhhhhhhhh.eeeee.......hhhhhhhhhhhhhhhh.eeeee.hhhhhhh...eeee......hhhhhhhhhhhhhhhhh.hhhhhhhh....eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------CARBAMOY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tpf B   0 GmKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAmIFEKNSTRTRmAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAmVDFVmmRVNKHETLLEFARYSKAPVINALSELYHPTQVLGDLFTIKEWNKmQNGIAKVAFIGDSNNmCNSWLITAAILGFEISIAmPKNYKISPEIWEFAmKQALISGAKISLGYDKFEALKDKDVVITDTWVSmGEENEKERKIKEFEGFmIDEKAmSVANKDAILLHCLPAYRGYEVSEEIFEKHADVIFEEARNRLYVVKALLCFLDNQRG 304
                             |       9        19        29        39|       49 |      59        69        79        89|    || 99       109       119       129       139 |     149       159       169      |179       189 |     199       209       219     | 229       239  |    249       259       269       279       289       299     
                             1-MSE                                 40-MSE     51-MSE                                 90-MSE||                                          141-MSE         157-MSE            176-MSE        191-MSE                           225-MSE          242-MSE |                                                        
                                                                                                                          95-MSE                                                                                                                                                  248-MSE                                                    
                                                                                                                           96-MSE                                                                                                                                                                                                            


Chain C from PDB  Type:PROTEIN  Length:301
 aligned with OTCA_CAMJE | Q9PNU6 from UniProtKB/Swiss-Prot  Length:306

    Alignment length:303
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300   
           OTCA_CAMJE     1 MKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAMIFEKNSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNKHETLLEFARYSKAPVINALSELYHPTQVLGDLFTIKEWNKMQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEKHADVIFEEARNRLYVVKALLCFLDNQR 303
               SCOP domains d3tpfc1 C:1-142 automated matches                                                                                                             d3tpfc2 C:143-303 automated matches                                                                                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhh........eeeeee...hhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhh.eeeee..hhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhh..hhhhh.eeeee...hhhhhhhhhhhhhhh.eeeee.......hhhhhhhhhhhhhhhh.eeeee.hhhhhhh...eeee.........--.hhhhhhhhhhh.hhhhhhhh....eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------CARBAMOY-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tpf C   1 mKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAmIFEKNSTRTRmAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAmVDFVmmRVNKHETLLEFARYSKAPVINALSELYHPTQVLGDLFTIKEWNKmQNGIAKVAFIGDSNNmCNSWLITAAILGFEISIAmPKNYKISPEIWEFAmKQALISGAKISLGYDKFEALKDKDVVITDTWVSmGEE--KERKIKEFEGFmIDEKAmSVANKDAILLHCLPAYRGYEVSEEIFEKHADVIFEEARNRLYVVKALLCFLDNQR 303
                            |       10        20        30        40        50|       60        70        80        90    || 100       110       120       130       140|      150      |160       170     | 180       190|      200       210       220    |  | -|      240 |     250       260       270       280       290       300   
                            1-MSE                                 40-MSE     51-MSE                                 90-MSE||                                          141-MSE         157-MSE            176-MSE        191-MSE                           225-MSE |        242-MSE |                                                       
                                                                                                                         95-MSE                                                                                                                              228  |              248-MSE                                                   
                                                                                                                          96-MSE                                                                                                                                231                                                                        


Chain D from PDB  Type:PROTEIN  Length:303
 aligned with OTCA_CAMJE | Q9PNU6 from UniProtKB/Swiss-Prot  Length:306

    Alignment length:303
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300   
           OTCA_CAMJE     1 MKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAMIFEKNSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNKHETLLEFARYSKAPVINALSELYHPTQVLGDLFTIKEWNKMQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEKHADVIFEEARNRLYVVKALLCFLDNQR 303
               SCOP domains d3tpfd1 D:1-142 automated matches                                                                                                             d3tpfd2 D:143-303 automated matches                                                                                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhh........eeeeee...hhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhh.eeeee..hhhhhhhhhhhh...eee......hhhhhhhhhhhhhhh..hhhhh.eeeee...hhhhhhhhhhhhhhh.eeeee.......hhhhhhhhhhhhhhhh.eeeee.hhhhhhh...eeee......hhhhhhhhhhhhhhhhh.hhhhhhhh....eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------CARBAMOY-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tpf D   1 mKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAmIFEKNSTRTRmAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAmVDFVmmRVNKHETLLEFARYSKAPVINALSELYHPTQVLGDLFTIKEWNKmQNGIAKVAFIGDSNNmCNSWLITAAILGFEISIAmPKNYKISPEIWEFAmKQALISGAKISLGYDKFEALKDKDVVITDTWVSmGEENEKERKIKEFEGFmIDEKAmSVANKDAILLHCLPAYRGYEVSEEIFEKHADVIFEEARNRLYVVKALLCFLDNQR 303
                            |       10        20        30        40        50|       60        70        80        90    || 100       110       120       130       140|      150      |160       170     | 180       190|      200       210       220    |  230       240 |     250       260       270       280       290       300   
                            1-MSE                                 40-MSE     51-MSE                                 90-MSE||                                          141-MSE         157-MSE            176-MSE        191-MSE                           225-MSE          242-MSE |                                                       
                                                                                                                         95-MSE                                                                                                                                                  248-MSE                                                   
                                                                                                                          96-MSE                                                                                                                                                                                                           


Chain E from PDB  Type:PROTEIN  Length:300
 aligned with OTCA_CAMJE | Q9PNU6 from UniProtKB/Swiss-Prot  Length:306

    Alignment length:302
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300  
           OTCA_CAMJE     1 MKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAMIFEKNSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNKHETLLEFARYSKAPVINALSELYHPTQVLGDLFTIKEWNKMQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEKHADVIFEEARNRLYVVKALLCFLDNQ 302
               SCOP domains d3tpfe1 E:1-142 automated matches                                                                                                             d3tpfe2 E:143-302 automated matches                                                                                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhh........eeeeee...hhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhh.eeeee..hhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhh..hhhhh.eeeee...hhhhhhhhhhhhhhh.eeeee.......hhhhhhhhhhhhhhhh.eeeee.hhhhhhh...eeee.........--.hhhhhhhhhhh.hhhhhhhh....eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------CARBAMOY------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tpf E   1 mKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAmIFEKNSTRTRmAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAmVDFVmmRVNKHETLLEFARYSKAPVINALSELYHPTQVLGDLFTIKEWNKmQNGIAKVAFIGDSNNmCNSWLITAAILGFEISIAmPKNYKISPEIWEFAmKQALISGAKISLGYDKFEALKDKDVVITDTWVSmGEE--KERKIKEFEGFmIDEKAmSVANKDAILLHCLPAYRGYEVSEEIFEKHADVIFEEARNRLYVVKALLCFLDNQ 302
                            |       10        20        30        40        50|       60        70        80        90    || 100       110       120       130       140|      150      |160       170     | 180       190|      200       210       220    |  | -|      240 |     250       260       270       280       290       300  
                            1-MSE                                 40-MSE     51-MSE                                 90-MSE||                                          141-MSE         157-MSE            176-MSE        191-MSE                           225-MSE |        242-MSE |                                                      
                                                                                                                         95-MSE                                                                                                                              228  |              248-MSE                                                  
                                                                                                                          96-MSE                                                                                                                                231                                                                       


Chain F from PDB  Type:PROTEIN  Length:298
 aligned with OTCA_CAMJE | Q9PNU6 from UniProtKB/Swiss-Prot  Length:306

    Alignment length:303
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300   
           OTCA_CAMJE     1 MKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAMIFEKNSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNKHETLLEFARYSKAPVINALSELYHPTQVLGDLFTIKEWNKMQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEKHADVIFEEARNRLYVVKALLCFLDNQR 303
               SCOP domains d3tpff1 F:1-142 automated matches                                                                                                             d3tpff2 F:143-303 automated matches                                                                                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhh........eeeeee...hhhhhhhhhhhhhhh..eeeee......---..hhhhhhhhhhhhh.eeeee..hhhhhhhhhhhh...eee......hhhhhhhhhhhhhhh..hhhhh.eeeee...hhhhhhhhhhhhhhh.eeeee.......hhhhhhhhhhhhhhhh.eeeee.hhhhhhh...eeee.....--hhhhhhhhhhhhhhhh.hhhhhhhh....eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------CARBAMOY-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tpf F   1 mKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAmIFEKNSTRTRmAFELAITELGGKALFLSSNDLQ---GEPVKDTARVIGAmVDFVmmRVNKHETLLEFARYSKAPVINALSELYHPTQVLGDLFTIKEWNKmQNGIAKVAFIGDSNNmCNSWLITAAILGFEISIAmPKNYKISPEIWEFAmKQALISGAKISLGYDKFEALKDKDVVITDTWVS--EENEKERKIKEFEGFmIDEKAmSVANKDAILLHCLPAYRGYEVSEEIFEKHADVIFEEARNRLYVVKALLCFLDNQR 303
                            |       10        20        30        40        50|       60        70  |   | 80        90    || 100       110       120       130       140|      150      |160       170     | 180       190|      200       210       220   |  |230       240 |     250       260       270       280       290       300   
                            1-MSE                                 40-MSE     51-MSE                73  77           90-MSE||                                          141-MSE         157-MSE            176-MSE        191-MSE                          224  |            242-MSE |                                                       
                                                                                                                         95-MSE                                                                                                                             227                  248-MSE                                                   
                                                                                                                          96-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)
(-)
Fold: ATC-like (129)
(-)
Superfamily: Aspartate/ornithine carbamoyltransferase (122)
(-)
Family: automated matches (35)
(-)
Protein domain: automated matches (35)
(-)
Campylobacter jejuni [TaxId: 192222] (1)
1ad3tpfa1A:1-142
1bd3tpfa2A:143-303
1cd3tpff1F:1-142
1dd3tpff2F:143-303
1ed3tpfb1B:0-142
1fd3tpfb2B:143-304
1gd3tpfc1C:1-142
1hd3tpfc2C:143-303
1id3tpfd1D:1-142
1jd3tpfd2D:143-303
1kd3tpfe1E:1-142
1ld3tpfe2E:143-302

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3TPF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3TPF)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (OTCA_CAMJE | Q9PNU6)
molecular function
    GO:0016597    amino acid binding    Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
    GO:0016743    carboxyl- or carbamoyltransferase activity    Catalysis of the transfer of a carboxyl- or carbamoyl group from one compound (donor) to another (acceptor).
    GO:0004585    ornithine carbamoyltransferase activity    Catalysis of the reaction: carbamoyl phosphate + L-ornithine = phosphate + L-citrulline.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006526    arginine biosynthetic process    The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0006520    cellular amino acid metabolic process    The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
    GO:0006591    ornithine metabolic process    The chemical reactions and pathways involving ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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(-) Related Entries Specified in the PDB File

1c9y HUMAN ANABOLIC ORNITHINE TRANSCARBAMOYLASE RELATED ID: IDP90828 RELATED DB: TARGETDB