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(-) Description

Title :  CRYSTAL STRUCTURE OF A SHORT CHAIN DEHYDROGENASE IN COMPLEX WITH NAD(P) FROM SINORHIZOBIUM MELILOTI 1021
 
Authors :  R. Agarwal, S. Chamala, B. Evans, R. Foti, A. Gizzi, B. Hillerich, A. Kar J. Lafleur, R. Seidel, G. Villigas, W. Zencheck, S. C. Almo, S. Swamina York Structural Genomics Research Consortium (Nysgrc)
Date :  06 Sep 11  (Deposition) - 21 Sep 11  (Release) - 21 Sep 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.93
Chains :  Asym. Unit :  A,B,C,D,E,F,G,I
Biol. Unit 1:  A,B  (2x)
Biol. Unit 2:  C,G  (2x)
Biol. Unit 3:  D,E,F,I  (1x)
Keywords :  Structural Genomics, Psi-Biology, New York Structural Genomics Research Consortium, Nysgrc, Short Chain Dehydrogenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. Agarwal, S. C. Almo, S. Swaminathan
Crystal Structure Of A Short Chain Dehydrogenase In Complex With Nad(P) From Sinorhizobium Meliloti 1021
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SHORT CHAIN DEHYDROGENASE
    ChainsA, B, C, D, E, F, G, I
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET
    Expression System StrainBL21(DE3)RIPL
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GeneR00292, SMC00372
    Organism CommonENSIFER MELILOTI
    Organism ScientificSINORHIZOBIUM MELILOTI
    Organism Taxid266834
    Strain1021
    SynonymPUTATIVE OXIDOREDUCTASE

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGI
Biological Unit 1 (2x)AB      
Biological Unit 2 (2x)  C   G 
Biological Unit 3 (1x)   DEF I

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1NAP8Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1NAP4Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1NAP4Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Biological Unit 3 (1, 4)
No.NameCountTypeFull Name
1NAP4Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:15 , SER A:17 , SER A:18 , GLY A:19 , ILE A:20 , ALA A:39 , ARG A:40 , ASN A:41 , GLY A:64 , ASP A:65 , VAL A:66 , ASN A:92 , ALA A:93 , GLY A:94 , THR A:116 , THR A:143 , SER A:144 , SER A:145 , TYR A:159 , LYS A:163 , PRO A:189 , GLY A:190 , GLY A:191 , THR A:192 , THR A:194 , PRO A:195 , ALA A:196 , ASN A:197 , HOH A:286 , HOH A:305 , HOH A:705 , HOH A:716 , HOH A:754 , HOH A:759BINDING SITE FOR RESIDUE NAP A 601
2AC2SOFTWAREGLY B:15 , ALA B:16 , SER B:17 , SER B:18 , GLY B:19 , ILE B:20 , ALA B:39 , ARG B:40 , ASN B:41 , GLY B:64 , ASP B:65 , VAL B:66 , ASN B:92 , ALA B:93 , GLY B:94 , THR B:116 , THR B:143 , SER B:144 , SER B:145 , TYR B:159 , LYS B:163 , PRO B:189 , GLY B:190 , GLY B:191 , THR B:192 , THR B:194 , PRO B:195 , ALA B:196 , ASN B:197 , HOH B:310 , HOH B:740BINDING SITE FOR RESIDUE NAP B 601
3AC3SOFTWAREGLY C:15 , SER C:17 , SER C:18 , GLY C:19 , ILE C:20 , ALA C:39 , ARG C:40 , ASN C:41 , GLY C:64 , ASP C:65 , VAL C:66 , ASN C:92 , ALA C:93 , GLY C:94 , THR C:116 , THR C:143 , SER C:144 , SER C:145 , TYR C:159 , LYS C:163 , GLY C:190 , GLY C:191 , THR C:192 , THR C:194 , PRO C:195 , ALA C:196 , ASN C:197 , HOH C:293 , HOH C:301 , HOH C:595 , HOH C:655BINDING SITE FOR RESIDUE NAP C 601
4AC4SOFTWAREGLY D:15 , SER D:17 , SER D:18 , GLY D:19 , ILE D:20 , ALA D:39 , ARG D:40 , ASN D:41 , GLY D:64 , ASP D:65 , VAL D:66 , ASN D:92 , ALA D:93 , GLY D:94 , THR D:116 , THR D:143 , SER D:144 , SER D:145 , TYR D:159 , LYS D:163 , PRO D:189 , GLY D:190 , GLY D:191 , THR D:192 , THR D:194 , PRO D:195 , ALA D:196 , ASN D:197 , HOH D:297 , HOH D:318 , HOH D:459 , HOH D:507BINDING SITE FOR RESIDUE NAP D 601
5AC5SOFTWAREGLY E:15 , SER E:17 , SER E:18 , GLY E:19 , ILE E:20 , ALA E:39 , ARG E:40 , ASN E:41 , VAL E:66 , ASN E:92 , ALA E:93 , GLY E:94 , THR E:116 , THR E:143 , SER E:144 , SER E:145 , TYR E:159 , LYS E:163 , GLY E:190 , GLY E:191 , THR E:192 , THR E:194 , PRO E:195 , ALA E:196 , HOH E:302 , HOH E:383BINDING SITE FOR RESIDUE NAP E 601
6AC6SOFTWAREGLY F:15 , SER F:17 , SER F:18 , GLY F:19 , ILE F:20 , ALA F:39 , ARG F:40 , ASN F:41 , GLY F:64 , VAL F:66 , ASN F:92 , ALA F:93 , GLY F:94 , THR F:116 , THR F:143 , SER F:144 , SER F:145 , TYR F:159 , LYS F:163 , PRO F:189 , GLY F:190 , GLY F:191 , THR F:192 , THR F:194 , PRO F:195 , ALA F:196 , HOH F:362BINDING SITE FOR RESIDUE NAP F 601
7AC7SOFTWAREGLY G:15 , SER G:17 , SER G:18 , GLY G:19 , ILE G:20 , ALA G:39 , ARG G:40 , ASN G:41 , GLY G:64 , ASP G:65 , VAL G:66 , ASN G:92 , ALA G:93 , GLY G:94 , THR G:116 , THR G:143 , SER G:144 , SER G:145 , TYR G:159 , LYS G:163 , PRO G:189 , GLY G:190 , GLY G:191 , THR G:192 , THR G:194 , PRO G:195 , ALA G:196 , HOH G:304 , HOH G:355 , HOH G:495 , HOH G:583BINDING SITE FOR RESIDUE NAP G 601
8AC8SOFTWAREGLY I:15 , SER I:17 , SER I:18 , GLY I:19 , ILE I:20 , ALA I:39 , ARG I:40 , ASN I:41 , GLY I:64 , ASP I:65 , VAL I:66 , ASN I:92 , ALA I:93 , GLY I:94 , THR I:116 , THR I:143 , SER I:144 , SER I:145 , TYR I:159 , LYS I:163 , PRO I:189 , GLY I:190 , GLY I:191 , THR I:192 , THR I:194 , PRO I:195 , ALA I:196 , ASN I:197 , HOH I:299 , HOH I:302 , HOH I:317 , HOH I:424 , HOH I:582 , HOH I:813BINDING SITE FOR RESIDUE NAP I 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3TOX)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Pro A:202 -Gly A:203
2Gly B:137 -Gly B:138
3Pro D:202 -Gly D:203
4Pro E:202 -Gly E:203
5Gly F:137 -Gly F:138

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3TOX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3TOX)

(-) Exons   (0, 0)

(no "Exon" information available for 3TOX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:254
 aligned with Q92SS3_RHIME | Q92SS3 from UniProtKB/TrEMBL  Length:256

    Alignment length:254
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251    
         Q92SS3_RHIME     2 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLASDGASFVTGAALLADGGASVTK 255
               SCOP domains d3toxa_ A: automated matches                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee....hhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhh.....eee......hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee............hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee.......hhhhh.....hhhhhhhh........hhhhhhhhhhhhhhhhhh.....eeee..hhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tox A   4 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLASDGASFVTGAALLADGGASVTK 257
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253    

Chain B from PDB  Type:PROTEIN  Length:248
 aligned with Q92SS3_RHIME | Q92SS3 from UniProtKB/TrEMBL  Length:256

    Alignment length:254
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251    
         Q92SS3_RHIME     2 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLASDGASFVTGAALLADGGASVTK 255
               SCOP domains d3toxb_ B: automated matches                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhhhh....eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee............hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee...........------.hhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tox B   4 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFAN------ETRGFVEGLHALKRIARPEEIAEAALYLASDGASFVTGAALLADGGASVTK 257
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193      |  -   |   213       223       233       243       253    
                                                                                                                                                                                                                              200    207                                                  

Chain C from PDB  Type:PROTEIN  Length:254
 aligned with Q92SS3_RHIME | Q92SS3 from UniProtKB/TrEMBL  Length:256

    Alignment length:254
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251    
         Q92SS3_RHIME     2 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLASDGASFVTGAALLADGGASVTK 255
               SCOP domains d3toxc_ C: automated matches                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee....hhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhh.....eee......hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee............hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee.......hhhhh.....hhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tox C   4 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLASDGASFVTGAALLADGGASVTK 257
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253    

Chain D from PDB  Type:PROTEIN  Length:254
 aligned with Q92SS3_RHIME | Q92SS3 from UniProtKB/TrEMBL  Length:256

    Alignment length:254
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251    
         Q92SS3_RHIME     2 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLASDGASFVTGAALLADGGASVTK 255
               SCOP domains d3toxd_ D: automated matches                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee....hhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee............hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee.......hhhhh.....hhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tox D   4 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLASDGASFVTGAALLADGGASVTK 257
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253    

Chain E from PDB  Type:PROTEIN  Length:254
 aligned with Q92SS3_RHIME | Q92SS3 from UniProtKB/TrEMBL  Length:256

    Alignment length:254
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251    
         Q92SS3_RHIME     2 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLASDGASFVTGAALLADGGASVTK 255
               SCOP domains d3toxe_ E: automated matches                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee............hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee.......hhhhh.....hhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tox E   4 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLASDGASFVTGAALLADGGASVTK 257
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253    

Chain F from PDB  Type:PROTEIN  Length:254
 aligned with Q92SS3_RHIME | Q92SS3 from UniProtKB/TrEMBL  Length:256

    Alignment length:259
                                                                                                                                                                                                                                                                                        256    
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251    |    
         Q92SS3_RHIME     2 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLASDGASFVTGAALLADGGASVTKA----   -
               SCOP domains d3toxf_ F: automated matches                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee............hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee...........-----.hhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tox F   4 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFAN-----PETRGFVEGLHALKRIARPEEIAEAALYLASDGASFVTGAALLADGGASVTKAAENL 262
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193      |  -  |    213       223       233       243       253         
                                                                                                                                                                                                                              200   206                                                        

Chain G from PDB  Type:PROTEIN  Length:251
 aligned with Q92SS3_RHIME | Q92SS3 from UniProtKB/TrEMBL  Length:256

    Alignment length:254
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251    
         Q92SS3_RHIME     2 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLASDGASFVTGAALLADGGASVTK 255
               SCOP domains d3toxg_ G: automated matches                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee............hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee.......hhhhh---hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tox G   4 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANL---APETRGFVEGLHALKRIARPEEIAEAALYLASDGASFVTGAALLADGGASVTK 257
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       | - |     213       223       233       243       253    
                                                                                                                                                                                                                               201 205                                                    

Chain I from PDB  Type:PROTEIN  Length:254
 aligned with Q92SS3_RHIME | Q92SS3 from UniProtKB/TrEMBL  Length:256

    Alignment length:254
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251    
         Q92SS3_RHIME     2 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLASDGASFVTGAALLADGGASVTK 255
               SCOP domains d3toxi_ I: automated matches                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee....hhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhh.....eee......hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee............hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee.......hhhhh.....hhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tox I   4 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLASDGASFVTGAALLADGGASVTK 257
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253    

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Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,I   (Q92SS3_RHIME | Q92SS3)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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