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(-) Description

Title :  CRYSTAL STRUCTURE OF UNIVERSAL STRESS PROTEIN FROM NITROSOMONAS EUROPAEA WITH AMP BOUND
 
Authors :  K. L. Tkaczuk, M. Chruszcz, I. A. Shumilin, E. Evdokimova, O. Kagan, A. S A. Edwards, A. Joachimiak, W. Minor, Midwest Center For Structura Genomics (Mcsg)
Date :  01 Sep 11  (Deposition) - 14 Sep 11  (Release) - 26 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Universal Stress Protein, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. L. Tkaczuk, I. A. Shumilin, M. Chruszcz, E. Evdokimova, A. Savchenko, W. Minor
Structural And Functional Insight Into The Universal Stress Protein Family.
Evol Appl V. 6 434 2013
PubMed-ID: 23745136  |  Reference-DOI: 10.1111/EVA.12057

(-) Compounds

Molecule 1 - UNIVERSAL STRESS PROTEIN (USP)
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P15TV-L
    Expression System Strain: BL21-GOLD(DE3)
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: NE1028
    Organism Scientific: NITROSOMONAS EUROPAEA
    Organism Taxid: 228410
    Strain: ATCC 19718

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1AMP1Ligand/IonADENOSINE MONOPHOSPHATE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1AMP2Ligand/IonADENOSINE MONOPHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:10 , VAL A:11 , ASP A:12 , ILE A:38 , HIS A:39 , VAL A:40 , ASP A:42 , VAL A:113 , GLY A:114 , HIS A:116 , THR A:128 , HOH A:179BINDING SITE FOR RESIDUE AMP A 149

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3TNJ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Leu A:125 -Gly A:126

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3TNJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3TNJ)

(-) Exons   (0, 0)

(no "Exon" information available for 3TNJ)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:130
 aligned with Q82VN8_NITEU | Q82VN8 from UniProtKB/TrEMBL  Length:148

    Alignment length:146
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141      
         Q82VN8_NITEU     2 SVYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLALLLGSTANSVLHYAKCDVLAVRLRD 147
               SCOP domains d3tnja_ A: automated matches                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.....hhhhhhhhhhhhhhhhh.eeeeeeee.--------...........hhhhhhhhhhhhhhhhhhhhh.hhh.eeeee.hhhhhhhhhhhhh...eeeeee.--------..hhhhhhhhhh..eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tnj A   2 SVYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLD--------YGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSH--------LGSTANSVLHYAKCDVLAVRLRD 147
                                    11        21        31        41|       51        61        71        81        91       101       111    |    -   |   131       141      
                                                                   42       51                                                              116      125
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3TNJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3TNJ)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q82VN8_NITEU | Q82VN8)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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    Leu A:125 - Gly A:126   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q82VN8_NITEU | Q82VN8: 2pfs

(-) Related Entries Specified in the PDB File

2pfs APO FORM THE SAME PROTEIN RELATED ID: APC102307 RELATED DB: TARGETDB