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(-) Description

Title :  N-DOMAIN OF HTRA1
 
Authors :  C. Eigenbrot, M. Ultsch
Date :  24 Aug 11  (Deposition) - 16 May 12  (Release) - 27 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. Eigenbrot, M. Ultsch, M. T. Lipari, P. Moran, S. J. Lin, R. Ganesan, C. Quan, J. Tom, W. Sandoval, M. Van Lookeren Campagne, D. Kirchhofe
Structural And Functional Analysis Of Htra1 And Its Subdomains.
Structure V. 20 1040 2012
PubMed-ID: 22578544  |  Reference-DOI: 10.1016/J.STR.2012.03.021

(-) Compounds

Molecule 1 - SERINE PROTEASE HTRA1
    ChainsA
    EC Number3.4.21.-
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System StrainT. NI
    Expression System Taxid7108
    FragmentN-TERMINAL PART (UNP RESIDUES 36-155)
    GeneHTRA, HTRA1, PRSS11
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHIGH-TEMPERATURE REQUIREMENT A SERINE PEPTIDASE 1, L56, SERINE PROTEASE 11

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 13)

Asymmetric/Biological Unit (4, 13)
No.NameCountTypeFull Name
1CL6Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
3PT2Ligand/IonPLATINUM (II) ION
4SCN4Ligand/IonTHIOCYANATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECL A:4 , CL A:5 , CL A:6BINDING SITE FOR RESIDUE PT A 1
02AC2SOFTWAREPT A:1 , CL A:5 , CL A:6 , PRO A:43 , HOH A:180BINDING SITE FOR RESIDUE CL A 4
03AC3SOFTWAREPT A:1 , CL A:4 , ARG A:40BINDING SITE FOR RESIDUE CL A 5
04AC4SOFTWAREPT A:1 , CL A:4 , VAL A:90 , LEU A:109BINDING SITE FOR RESIDUE CL A 6
05AC5SOFTWARECL A:7 , CL A:8 , ARG A:137 , CL A:161 , HOH A:177BINDING SITE FOR RESIDUE PT A 2
06AC6SOFTWAREPT A:2 , CL A:8 , HOH A:12BINDING SITE FOR RESIDUE CL A 7
07AC7SOFTWAREPT A:2 , CL A:7 , PRO A:48 , ARG A:137BINDING SITE FOR RESIDUE CL A 8
08AC8SOFTWAREGLU A:51 , SER A:114 , CYS A:130 , ARG A:133BINDING SITE FOR RESIDUE SCN A 159
09AC9SOFTWAREGLU A:54 , ALA A:58 , ARG A:59 , GLY A:69 , GLU A:85 , HOH A:192BINDING SITE FOR RESIDUE GOL A 160
10BC1SOFTWAREPT A:2 , CYS A:53 , ARG A:57 , ARG A:137BINDING SITE FOR RESIDUE CL A 161
11BC2SOFTWAREGLN A:49 , GLN A:79BINDING SITE FOR RESIDUE SCN A 162
12BC3SOFTWAREGLU A:72 , ALA A:134 , ARG A:137BINDING SITE FOR RESIDUE SCN A 163

(-) SS Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1A:37 -A:62
2A:41 -A:64
3A:46 -A:65
4A:53 -A:68
5A:76 -A:89
6A:83 -A:110
7A:112 -A:130

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3TJQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (4, 4)

Asymmetric/Biological Unit (4, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_076372E51GHTRA1_HUMANPolymorphism  ---AE51G
2UniProtVAR_076373S121RHTRA1_HUMANDisease (CADASIL2)  ---AS121R
3UniProtVAR_076374A123SHTRA1_HUMANDisease (CADASIL2)  ---AA123S
4UniProtVAR_076375R133GHTRA1_HUMANDisease (CADASIL2)  ---AR133G

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1KAZAL_2PS51465 Kazal domain profile.HTRA1_HUMAN110-157  1A:110-154

(-) Exons   (1, 1)

Asymmetric/Biological Unit (1, 1)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000003689841aENSE00001448527chr10:124221041-124221640600HTRA1_HUMAN1-1581581A:36-154 (gaps)119
1.2ENST000003689842ENSE00001727698chr10:124248418-124248517100HTRA1_HUMAN158-191340--
1.3ENST000003689843ENSE00001656483chr10:124248938-124249142205HTRA1_HUMAN191-259690--
1.4ENST000003689844ENSE00001691312chr10:124266207-124266401195HTRA1_HUMAN260-324650--
1.5ENST000003689845ENSE00001099158chr10:124266886-12426691833HTRA1_HUMAN325-335110--
1.6ENST000003689846ENSE00001099160chr10:124268172-124268286115HTRA1_HUMAN336-374390--
1.7ENST000003689847ENSE00001099153chr10:124269612-12426966958HTRA1_HUMAN374-393200--
1.8ENST000003689848ENSE00001099157chr10:124271486-12427158196HTRA1_HUMAN393-425330--
1.9bENST000003689849bENSE00001608082chr10:124273707-124274424718HTRA1_HUMAN425-480560--

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:106
 aligned with HTRA1_HUMAN | Q92743 from UniProtKB/Swiss-Prot  Length:480

    Alignment length:119
                                    45        55        65        75        85        95       105       115       125       135       145         
          HTRA1_HUMAN    36 GCPDRCEPARCPPQPEHCEGGRARDACGCCEVCGAPEGAACGLQEGPCGEGLQCVVPFGVPASATVRRRAQAGLCVCASSEPVCGSDANTYANLCQLRAASRRSERLHRPPVIVLQRGA 154
               SCOP domains ----------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhh..........eee......eee......ee..........eeee...-------------.eeeee.....ee.....ee.hhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ---------------G---------------------------------------------------------------------R-S---------G--------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------KAZAL_2  PDB: A:110-154 UniProt: 110-157      PROSITE
               Transcript 1 Exon 1.1a  PDB: A:36-154 (gaps) UniProt: 1-158 [INCOMPLETE]                                                             Transcript 1
                 3tjq A  36 GCPDRCEPARCPPQPEHCEGGRARDACGCCEVCGAPEGAACGLQEGPCGEGLQCVVPF-------------AGLCVCASSEPVCGSDANTYANLCQLRAASRRSERLHRPPVIVLQRGA 154
                                    45        55        65        75        85       | -         - |     115       125       135       145         
                                                                                    93           107                                               

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3TJQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3TJQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3TJQ)

(-) Gene Ontology  (24, 24)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (HTRA1_HUMAN | Q92743)
molecular function
    GO:0019838    growth factor binding    Interacting selectively and non-covalently with any growth factor, proteins or polypeptides that stimulate a cell or organism to grow or proliferate.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0005520    insulin-like growth factor binding    Interacting selectively and non-covalently with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0060718    chorionic trophoblast cell differentiation    The process in which relatively unspecialized cells of the ectoplacental cone acquire specialized structural and/or functional features that characterize chorionic trophoblasts. These cells will migrate towards the spongiotrophoblast layer and give rise to syncytiotrophoblasts of the labyrinthine layer.
    GO:0097187    dentinogenesis    The process whose specific outcome is the formation of dentin, the mineralized tissue that constitutes the major bulk of teeth. Dentin may be one of three types: primary dentin, secondary dentin, and tertiary dentin.
    GO:0022617    extracellular matrix disassembly    A process that results in the breakdown of the extracellular matrix.
    GO:0030514    negative regulation of BMP signaling pathway    Any process that stops, prevents, or reduces the frequency, rate or extent of the BMP signaling pathway.
    GO:0050687    negative regulation of defense response to virus    Any process that stops, prevents or reduces the rate or extent of antiviral mechanisms, thereby facilitating viral replication.
    GO:0030512    negative regulation of transforming growth factor beta receptor signaling pathway    Any process that stops, prevents, or reduces the frequency, rate or extent of any TGF-beta receptor signaling pathway.
    GO:0001890    placenta development    The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin.
    GO:0050679    positive regulation of epithelial cell proliferation    Any process that activates or increases the rate or extent of epithelial cell proliferation.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0001558    regulation of cell growth    Any process that modulates the frequency, rate, extent or direction of cell growth.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0031012    extracellular matrix    A structure lying external to one or more cells, which provides structural support for cells or tissues.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HTRA1_HUMAN | Q927432joa 2ytw 3num 3nwu 3nzi 3tjn 3tjo

(-) Related Entries Specified in the PDB File

3tjn 3tjo