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(-) Description

Title :  CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS SASG E-G52 MODULE
 
Authors :  D. T. Gruszka, J. A. Wojdyla, J. P. Turkenburg, J. R. Potts
Date :  21 Aug 11  (Deposition) - 18 Apr 12  (Release) - 09 May 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Single-Layer Beta Sheet, Biofilm Formation, Surface, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. T. Gruszka, J. A. Wojdyla, R. J. Bingham, J. P. Turkenburg, I. W. Manfield, A. Steward, A. P. Leech, J. A. Geoghegan, T. J. Foster, J. Clarke, J. R. Potts
Staphylococcal Biofilm-Forming Protein Has A Contiguous Rod-Like Structure.
Proc. Natl. Acad. Sci. Usa V. 109 E1011 2012
PubMed-ID: 22493247  |  Reference-DOI: 10.1073/PNAS.1119456109

(-) Compounds

Molecule 1 - SURFACE PROTEIN G
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSKB2
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 498-629
    Gene: SAOUHSC_02798, SASG
    Organism Scientific: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS
    Organism Taxid: 93061
    Strain: NCTC 8325

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3TIP)

(-) Sites  (0, 0)

(no "Site" information available for 3TIP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3TIP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3TIP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3TIP)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1G5PS51109 G5 domain profile.SASG_STAA8419-501
547-629
675-757
803-885
931-1013
1059-1141
1187-1269
1315-1397
1443-1525		  1-
A:547-629
-
-
-
-
-
-
-

(-) Exons   (0, 0)

(no "Exon" information available for 3TIP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:132
 aligned with SASG_STAA8 | Q2G2B2 from UniProtKB/Swiss-Prot  Length:1627

    Alignment length:132
                                   507       517       527       537       547       557       567       577       587       597       607       617       627  
           SASG_STAA8   498 GPETIAPGHRDEFDPKLPTGEKEEVPGKPGIKNPETGDVVRPPVDSVTKYGPVKGDSIVEKEEIPFEKERKFNPDLAPGTEKVTREGQKGEKTITTPTLKNPLTGEIISKGESKEEITKDPINELTEYGPET 629
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eee...eeeee........eeee....eee......eee....eeeee..ee...eeeeeee...eeeee........eeeee....eeeeeee.eee......eeee...eeeeee....eeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE G5  ---------------------------------------------G5  PDB: A:547-629 UniProt: 547-629                                                 PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3tip A 498 GPHMIAPGHRDEFDPKLPTGEKEEVPGKPGIKNPETGDVVRPPVDSVTKYGPVKGDSIVEKEEIPFEKERKFNPDLAPGTEKVTREGQKGEKTITTPTLKNPLTGEIISKGESKEEITKDPINELTEYGPET 629
                                   507       517       527       537       547       557       567       577       587       597       607       617       627
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3TIP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3TIP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3TIP)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (SASG_STAA8 | Q2G2B2)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005618    cell wall    The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SASG_STAA8 | Q2G2B2: 3tiq 4wve 5dbl

(-) Related Entries Specified in the PDB File

3tiq