3TIO - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURES OF YRDA FROM ESCHERICHIA COLI, A HOMOLOGOUS PROTEIN OF GAMMA-CLASS CARBONIC ANHYDRASE, SHOW POSSIBLE ALLOSTERIC CONFORMATIONS

Authors :   H. M. Park, J. W. Choi, J. E. Lee, C. H. Jung, B. Y. Kim, J. S. Kim

Date :   21 Aug 11 (Deposition) - 01 Aug 12 (Release) - 29 Aug 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.41

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C  (1x)
Biol. Unit 2: D,E,F  (1x)

Keywords :   Carbonic Anhydrase (Ca) Catalyzes, Zinc Ion Binding, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. M. Park, J. H. Park, J. W. Choi, J. E. Lee, B. Y. Kim, C. H. Jung, J. S. Kim
Structures Of The Gamma-Class Carbonic Anhydrase Homologue Yrda Suggest A Possible Allosteric Switch
Acta Crystallogr. , Sect. D V. 68 920 2012
PubMed-ID: 22868757 | Reference-DOI: 10.1107/S0907444912017210

Molecule 1 - PROTEIN YRDA
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	YRDA, B3279, JW5710
	Mutation	:	YES
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	83333
	Strain	:	K12

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A	B	C
Biological Unit 2 (1x)	:				D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 10)

No.	Name	Count	Type	Full Name
1	PO4	4	Ligand/Ion	PHOSPHATE ION
2	ZN	6	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	PO4	2	Ligand/Ion	PHOSPHATE ION
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	PO4	2	Ligand/Ion	PHOSPHATE ION
2	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:67 , HIS A:70 , HIS A:96 , HIS C:91	BINDING SITE FOR RESIDUE ZN A 1
02	AC2	SOFTWARE	LYS A:92 , HOH A:431 , HOH A:459 , HOH A:479 , LYS B:92 , PO4 C:1 , LYS C:92	BINDING SITE FOR RESIDUE PO4 A 185
03	AC3	SOFTWARE	HIS A:91 , HIS B:67 , VAL B:68 , HIS B:70 , HIS B:96	BINDING SITE FOR RESIDUE ZN B 185
04	AC4	SOFTWARE	HIS B:91 , HIS C:67 , HIS C:70 , HIS C:96	BINDING SITE FOR RESIDUE ZN C 185
05	AC5	SOFTWARE	LEU A:42 , GLY A:63 , PO4 A:185 , HOH A:447 , LEU B:42 , GLY B:63 , LYS B:92 , HOH B:319 , LEU C:42 , GLY C:63 , LYS C:92 , HOH C:493	BINDING SITE FOR RESIDUE PO4 C 1
06	AC6	SOFTWARE	HIS D:67 , HIS D:96 , HOH F:1 , HIS F:91	BINDING SITE FOR RESIDUE ZN D 185
07	AC7	SOFTWARE	LYS D:92 , HOH D:306 , HOH D:384 , HOH D:395 , LYS E:92 , LYS F:92 , PO4 F:186	BINDING SITE FOR RESIDUE PO4 D 186
08	AC8	SOFTWARE	HIS D:91 , HOH D:753 , HIS E:67 , HIS E:96	BINDING SITE FOR RESIDUE ZN E 185
09	AC9	SOFTWARE	HIS E:91 , HIS F:67 , VAL F:68 , HIS F:70 , HIS F:96	BINDING SITE FOR RESIDUE ZN F 185
10	BC1	SOFTWARE	LEU D:42 , PO4 D:186 , HOH D:438 , LEU E:42 , GLY E:63 , LYS E:92 , LEU F:42 , GLY F:63 , LYS F:92 , HOH F:194 , HOH F:349 , HOH F:1057	BINDING SITE FOR RESIDUE PO4 F 186

(no "SS Bond" information available for 3TIO)

Asymmetric Unit

No.	Residues
1	Ser A:145	-	Pro A:146
2	Ser B:145	-	Pro B:146
3	Ser C:145	-	Pro C:146
4	Ser D:145	-	Pro D:146
5	Ser E:145	-	Pro E:146
6	Ser F:145	-	Pro F:146

(no "SAP(SNP)/Variant" information available for 3TIO)

(no "PROSITE Motif" information available for 3TIO)

(no "Exon" information available for 3TIO)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:176
 aligned with YRDA_ECOLI | P0A9W9 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:176
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172      
           YRDA_ECOLI     3 DVLRPYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYLDQ 178
               SCOP domains d3tioa_ A: automated matches                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.......ee....ee....eeeeeeee....ee....eeeeeeeeeee....ee....eee.............eee....ee....eee..ee...eee....ee....ee...eee....ee....ee...eeee....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tio A   3 DVLHPYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYLDQ 178
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Chain B from PDB  Type:PROTEIN  Length:170
 aligned with YRDA_ECOLI | P0A9W9 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:176
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172      
           YRDA_ECOLI     3 DVLRPYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYLDQ 178
               SCOP domains d3tiob_ B: automated matches                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.......ee....ee....eeeeeeee....ee....eeeeeeeeeee....ee....eee.....------..eee....ee....eee..ee...eee....ee....ee...eee....ee....ee...eeee....eeeee.hhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tio B   3 DVLHPYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKS------NPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYLDQ 178
                                    12        22        32        42        52        62        72      | 82        92       102       112       122       132       142       152       162       172      
                                                                                                72     79

Chain C from PDB  Type:PROTEIN  Length:176
 aligned with YRDA_ECOLI | P0A9W9 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:176
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172      
           YRDA_ECOLI     3 DVLRPYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYLDQ 178
               SCOP domains d3tioc_ C: automated matches                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.......ee....ee....eeeeeeee....ee....eeeeeeeeeee....ee....eee.............eee....ee....eee..ee...eee....ee....ee...eee....ee....ee...eeee....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tio C   3 DVLHPYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYLDQ 178
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Chain D from PDB  Type:PROTEIN  Length:174
 aligned with YRDA_ECOLI | P0A9W9 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:174
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172    
           YRDA_ECOLI     3 DVLRPYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYL 176
               SCOP domains d3tiod_ D: automated matches                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..ee.......ee....ee....eeeeeeee....ee....eeeeeeeeeee....ee....eee.............eee....ee....eee..ee...eee....ee....ee...eee....ee....ee...eeee....eeeee.hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3tio D   3 DVLHPYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYL 176
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Chain E from PDB  Type:PROTEIN  Length:176
 aligned with YRDA_ECOLI | P0A9W9 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:176
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172      
           YRDA_ECOLI     3 DVLRPYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYLDQ 178
               SCOP domains d3tioe_ E: automated matches                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.......ee....ee....eeeeeeee....ee....eeeeeeeeeee....ee....eee.............eee....ee....eee..ee...eee....ee....ee...eee....ee....ee...eeee....eeeee.hhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tio E   3 DVLHPYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYLDQ 178
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Chain F from PDB  Type:PROTEIN  Length:177
 aligned with YRDA_ECOLI | P0A9W9 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:177
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       
           YRDA_ECOLI     3 DVLRPYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYLDQG 179
               SCOP domains d3tiof_ F: automated matches                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.......ee....ee....eeeeeeee....ee....eeeeeeeeeee....ee....eee.............eee....ee....eee..ee...eee....ee....ee...eee....ee....ee...eeee....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tio F   3 DVLHPYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYLDQG 179
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Single-stranded left-handed beta-helix (154)

Superfamily: Trimeric LpxA-like enzymes (147)

Family: automated matches (55)

Protein domain: automated matches (55)

Escherichia coli K-12 [TaxId: 83333] (2)

1a	d3tioa_	A:
1b	d3tiob_	B:
1c	d3tioc_	C:
1d	d3tiod_	D:
1e	d3tioe_	E:
1f	d3tiof_	F:

(no "CATH Domain" information available for 3TIO)

(no "Pfam Domain" information available for 3TIO)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (YRDA_ECOLI | P0A9W9)

molecular function
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		PO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		ZN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Ser A:145 - Pro A:146	[ RasMol ]
		Ser B:145 - Pro B:146	[ RasMol ]
		Ser C:145 - Pro C:146	[ RasMol ]
		Ser D:145 - Pro D:146	[ RasMol ]
		Ser E:145 - Pro E:146	[ RasMol ]
		Ser F:145 - Pro F:146	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	3tio
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	YRDA_ECOLI \| P0A9W9
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	YRDA_ECOLI \| P0A9W9
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	YRDA_ECOLI \| P0A9W9	:	3tis

(no "Related Entries Specified in the PDB File" available for 3TIO)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 10)

Sites (10, 10)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 6)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (2, 2)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File