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Title :   CRYSTAL STRUCTURE OF SUBUNIT B MUTANT H156A OF THE A1AO ATP SYNTHASE

Authors :   V. S. Tadwal, M. S. S. Manimekalai, J. Jeyakanthan, G. Gruber

Date :   18 Aug 11 (Deposition) - 05 Sep 12 (Release) - 05 Sep 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.75

Chains :   Asym./Biol. Unit : A,B

Keywords :   Hydrolase, Atp Synthesis, Hydrogen Ion Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   V. S. Tadwal, M. S. S. Manimekalai, G. Gruber
Structure Of Subunit A Mutants H156A, N157A And N157T Of Th A1Ao Atp Synthase
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - V-TYPE ATP SYNTHASE BETA CHAIN
	Chains	:	A, B
	EC Number	:	3.6.3.14
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET9D-HIS6
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	AHAB, ATPB, MM_0779
	Mutation	:	YES
	Organism Scientific	:	METHANOSARCINA MAZEI
	Organism Taxid	:	192952
	Strain	:	GO1
	Synonym	:	V-ATPASE SUBUNIT B

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (6, 15)

No.	Name	Count	Type	Full Name
1	AES	1	Ligand/Ion	4-(2-AMINOETHYL)BENZENESULFONYL FLUORIDE
2	CL	2	Ligand/Ion	CHLORIDE ION
3	GOL	9	Ligand/Ion	GLYCEROL
4	P33	1	Ligand/Ion	3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
5	PG0	1	Ligand/Ion	2-(2-METHOXYETHOXY)ETHANOL
6	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL

Asymmetric Unit (15, 15)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ILE A:185 , THR A:186 , ASN A:187 , LEU A:212 , ALA A:213 , ASP A:214 , HOH A:483 , HOH A:798	BINDING SITE FOR RESIDUE GOL A 461
02	AC2	SOFTWARE	HIS A:333 , ARG A:334 , LYS A:335 , GLY A:336 , HOH A:489 , HOH A:569 , HOH A:570 , HOH A:727 , HOH A:893 , HOH A:934 , THR B:21 , GLU B:22 , PRO B:23 , ALA B:49 , AES B:1474	BINDING SITE FOR RESIDUE P33 A 5936
03	AC3	SOFTWARE	ASP A:125 , ARG A:142 , PRO A:170 , GLY A:171 , SER A:172 , GLY A:358 , HOH A:643 , HOH A:876	BINDING SITE FOR RESIDUE GOL A 462
04	AC4	SOFTWARE	MET A:34 , GLY A:35 , ASP A:36 , ARG A:40 , ASP A:109 , ALA A:113 , ALA A:114 , GOL A:465 , HOH A:1097	BINDING SITE FOR RESIDUE GOL A 463
05	AC5	SOFTWARE	LYS A:20 , THR A:21 , GLU A:22 , PRO A:23 , ALA A:49 , HOH A:981 , GLU B:204 , ARG B:205 , HOH B:648	BINDING SITE FOR RESIDUE GOL A 464
06	AC6	SOFTWARE	PRO A:14 , ARG A:40 , VAL A:56 , ALA A:113 , GOL A:463 , HOH A:1026 , ILE B:387 , VAL B:388 , HOH B:875	BINDING SITE FOR RESIDUE GOL A 465
07	AC7	SOFTWARE	TYR A:236 , HOH A:991 , HOH A:1036 , GLU B:237 , GOL B:463 , HOH B:898	BINDING SITE FOR RESIDUE GOL A 466
08	AC8	SOFTWARE	ASP A:316 , HOH A:486 , HOH A:601 , ARG B:334	BINDING SITE FOR RESIDUE CL A 467
09	AC9	SOFTWARE	GLY A:336 , ARG A:413 , HOH A:626 , HOH A:754 , HOH A:898 , HOH A:909 , P33 A:5936 , LYS B:20 , PRO B:23 , VAL B:24 , TYR B:26 , ASP B:46 , SER B:47 , SER B:48 , HOH B:814	BINDING SITE FOR RESIDUE AES B 1474
10	BC1	SOFTWARE	ASP B:125 , ARG B:142 , HIS B:241 , ALA B:293 , HOH B:489 , HOH B:570	BINDING SITE FOR RESIDUE GOL B 461
11	BC2	SOFTWARE	ARG A:349 , THR B:137 , ASN B:138 , SER B:346 , SER B:368 , ASP B:369 , HOH B:480 , HOH B:538 , HOH B:566 , HOH B:1056	BINDING SITE FOR RESIDUE GOL B 462
12	BC3	SOFTWARE	PHE A:149 , ILE A:321 , GLN A:325 , PHE B:149 , ILE B:321 , GLN B:325 , HOH B:779 , HOH B:780 , HOH B:932	BINDING SITE FOR RESIDUE PG4 B 6112
13	BC4	SOFTWARE	MET A:115 , ASN A:116 , TYR A:236 , LYS A:291 , HOH A:817 , HOH A:1097 , ASN B:116 , TYR B:236 , LYS B:291	BINDING SITE FOR RESIDUE PG0 B 6108
14	BC5	SOFTWARE	GLN A:106 , GLU A:237 , GOL A:466 , HOH A:979 , HOH A:980 , TYR B:236	BINDING SITE FOR RESIDUE GOL B 463
15	BC6	SOFTWARE	TYR B:277 , ASP B:316	BINDING SITE FOR RESIDUE CL B 464

(no "SS Bond" information available for 3TGW)

(no "Cis Peptide Bond" information available for 3TGW)

(no "SAP(SNP)/Variant" information available for 3TGW)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ATPASE_ALPHA_BETA	PS00152	ATP synthase alpha and beta subunits signature.	VATB_METMA	339-348	2	A:339-348 B:339-348

(no "Exon" information available for 3TGW)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:445
 aligned with VATB_METMA | Q60187 from UniProtKB/Swiss-Prot  Length:460

    Alignment length:448
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450        
           VATB_METMA    11 IAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDKFVRQGRNENRTIEDTLEIGWQILTHLPENQLGRIDNKYIQKYHPAHRK 458
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.........eeeee.....eeeeeeeee...eeeeee......---.....eeee..eeeehhhhh.eeee...............eeee.....................hhhhhh...........eee....hhhhhhhhhhhhh........eeeeeeeeeehhhhhhhhhhhhhhhhhhh.eeeeeee...hhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeehhhhhhhhhhhhhhhh..........hhhhhhhhhhhh..ee......eeeeeeeee...........hhhhhh..eeee.hhhhhhh...........ee.hhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP-------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tgw A  11 IAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGG---DCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPANEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDKFVRQGRNENRTIEDTLEIGWQILTHLPENQLGRIDNKYIQKYHPAHRK 458
                                    20        30        40        50        60 |   |  70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450        
                                                                              62  66

Chain B from PDB  Type:PROTEIN  Length:441
 aligned with VATB_METMA | Q60187 from UniProtKB/Swiss-Prot  Length:460

    Alignment length:451
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459 
           VATB_METMA    10 QIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDKFVRQGRNENRTIEDTLEIGWQILTHLPENQLGRIDNKYIQKYHPAHRKAK 460
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee.........eeeee.....eeeeeeeee...eeeeee......------..eeee..eeeehhhhh..eee...............eeee.....................hhhhhh...........eeee...hhhhhhhhhhhhh.......eeeeeeeeeeehhhhhhhhhhhhhhhhhhh.eeeeeee...hhhhhhhhhhhhhhhhhhhhhhhheeeeeeeehhhhhhhhhh.....----........hhhhhhhhhhh..ee......eeeeeeeeee...........hhhhh..eeee.hhhhhhh...........ee.hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tgw B  10 QIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGG------VIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPANEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAA----PGRRGYPGYMYTDLATLYERAGIVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDKFVRQGRNENRTIEDTLEIGWQILTHLPENQLGRIDNKYIQKYHPAHRKAK 460
                                    19        29        39        49        59  |     69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259  |    269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459 
                                                                               62     69                                                                                                                                                                                              262  267

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3TGW)

(no "CATH Domain" information available for 3TGW)

(no "Pfam Domain" information available for 3TGW)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (VATB_METMA | Q60187)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0016820	hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane.
	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
biological process
	GO:0006754	ATP biosynthetic process	The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0015991	ATP hydrolysis coupled proton transport	The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis.
	GO:0046034	ATP metabolic process	The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0015986	ATP synthesis coupled proton transport	The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
	GO:0006811	ion transport	The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0042777	plasma membrane ATP synthesis coupled proton transport	The transport of protons across the plasma membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
	GO:0015992	proton transport	The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain	A protein complex that forms part of a proton-transporting two-sector ATPase complex and catalyzes ATP hydrolysis or synthesis. The catalytic domain (F1, V1, or A1) comprises a hexameric catalytic core and a central stalk, and is peripherally associated with the membrane when the two-sector ATPase is assembled.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3tgw)

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	3tgw
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	VATB_METMA \| Q60187
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	3.6.3.14
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	VATB_METMA \| Q60187	:	2c61 2rkw 3b2q 3dsr 3eiu 3ssa 3tiv

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 15)

Sites (15, 15)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

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