3TG7 - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF ADENOVIRUS SEROTYPE 5 HEXON AT 1.6A RESOLUTION

Authors :   Y. Zhu, A. W. Roszak, N. W. Isaacs, J. H. Mcvey, S. A. Nicklin, A. H. Baker

Date :   17 Aug 11 (Deposition) - 02 Nov 11 (Release) - 02 Nov 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.57

Chains :   Asym. Unit : A
Biol. Unit 1: A  (3x)

Keywords :   Adenovirus Structural Protein, With New Finding Featuring Possible Binding To Human Coagulation Factor X, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Zhu, A. W. Roszak, N. W. Isaacs, J. H. Mcvey, S. A. Nicklin, A. H. Baker
Crystal Structure Of Adenovirus Serotype 5 Hexon At 1. 6A Resolution
To Be Published
PubMed: search

Molecule 1 - HEXON PROTEIN
	Chains	:	A
	Organism Common	:	HADV-5
	Organism Scientific	:	HUMAN ADENOVIRUS 5
	Organism Taxid	:	28285
	Synonym	:	LATE PROTEIN 2

		1
Asymmetric Unit	:	A
Biological Unit 1 (3x)	:	A

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 3TG7)

(no "Site" information available for 3TG7)

Asymmetric Unit

No.	Residues
1	A:413	-	A:413

Asymmetric Unit

No.	Residues
1	Gln A:200	-	Pro A:201
2	Trp A:730	-	Pro A:731
3	Phe A:845	-	Pro A:846
4	Thr A:942	-	Pro A:943

(no "SAP(SNP)/Variant" information available for 3TG7)

(no "PROSITE Motif" information available for 3TG7)

(no "Exon" information available for 3TG7)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:889
 aligned with CAPSH_ADE05 | P04133 from UniProtKB/Swiss-Prot  Length:952

    Alignment length:940
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817       827       837       847       857       867       877       887       897       907       917       927       937       947
          CAPSH_ADE05     8 PQWSYMHISGQDASEYLSPGLVQFARATETYFSLNNKFRNPTVAPTHDVTTDRSQRLTLRFIPVDREDTAYSYKARFTLAVGDNRVLDMASTYFDIRGVLDRGPTFKPYSGTAYNALAPKGAPNPCEWDEAATALEINLEEEDDDNEDEVDEQAEQQKTHVFGQAPYSGINITKEGIQIGVEGQTPKYADKTFQPEPQIGESQWYETEINHAAGRVLKKTTPMKPCYGSYAKPTNENGGQGILVKQQNGKLESQVEMQFFSTTEATAGNGDNLTPKVVLYSEDVDIETPDTHISYMPTIKEGNSRELMGQQSMPNRPNYIAFRDNFIGLMYYNSTGNMGVLAGQASQLNAVVDLQDRNTELSYQLLLDSIGDRTRYFSMWNQAVDSYDPDVRIIENHGTEDELPNYCFPLGGVINTETLTKVKPKTGQENGWEKDATEFSDKNEIRVGNNFAMEINLNANLWRNFLYSNIALYLPDKLKYSPSNVKISDNPNTYDYMNKRVVAPGLVDCYINLGARWSLDYMDNVNPFNHHRNAGLRYRSMLLGNGRYVPFHIQVPQKFFAIKNLLLLPGSYTYEWNFRKDVNMVLQSSLGNDLRVDGASIKFDSICLYATFFPMAHNTASTLEAMLRNDTNDQSFNDYLSAANMLYPIPANATNVPISIPSRNWAAFRGWAFTRLKTKETPSLGSGYDPYYTYSGSIPYLDGTFYLNHTFKKVAITFDSSVSWPGNDRLLTPNEFEIKRSVDGEGYNVAQCNMTKDWFLVQMLANYNIGYQGFYIPESYKDRMYSFFRNFQPMSRQVVDDTKYKDYQQVGILHQHNNSGFVGYLAPTMREGQAYPANFPYPLIGKTAVDSITQKKFLCDRTLWRIPFSSNFMSMGALTDLGQNLLYANSAHALDMTFEVDPMDEPTLLYVLFEVFDVVRVHRPHRGVIETVYLRTPFSA 947
               SCOP domains d3tg7a1 A:7-636 Adenovirus hexon                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      d3tg7a2 A:637-946 Adenovirus hexon                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh.....hhhhhhhhhhhhhhhhhh....hhhhh...................eeee...eeee...eeeeeeeeee.....ee....eeeeeeeee........................eee..----------------------------.eee....ee...ee..eeeee.---..ee.......................eeeeee............ee.............------.....eeeee....--------....eeeeee...ee...eeeee........hhhhhhheeee.....eee.hhhh......hhhhh.eeee..............hhhhhhhhhhhhhh.....hhhhh......hhhhhhee..........ee.........eee..ee.------..ee........eee.......ee.hhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhh..hhhhhh.......ee.hhhhhh........hhhhhhhhhhhh...eeeeeeeee.........ee..eeeeeeeeee.hhhhheee...........eeeeeeeeeeee....hhhhhhhhhhhhhhhhhheeee....eeeeeeee.....eeeeeeeee......eeeeeeee.hhh................hhhhhh...hhh.eeeeeeee...eee...........ee...hhhhhhhh......hhhhhhhhhhhhhh.........hhhhh...hhhhheeeeeeeee...................................................eeeeeeeee....eeee............hhhhhhhhhhh.eeeeeeeee......eeeeeeee.eeeeeee.......eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tg7 A   7 PQWSYMHISGQDASEYLSPGLVQFARATETYFSLNNKFRNPTVAPTHDVTTDRSQRLTLRFIPVDREDTAYSYKARFTLAVGDNRVLDMASTYFDIRGVLDRGPTFKPYSGTAYNALAPKGAPNPCEWDE----------------------------THVFGQAPYSGINITKEGIQIGV---TPKYADKTFQPEPQIGESQWYETEINHAAGRVLKKTTPMKPCYGSYAKPTNENGGQGILV------LESQVEMQFFSTTE--------LTPKVVLYSEDVDIETPDTHISYMPTIKEGNSRELMGQQSMPNRPNYIAFRDNFIGLMYYNSTGNMGVLAGQASQLNAVVDLQDRNTELSYQLLLDSIGDRTRYFSMWNQAVDSYDPDVRIIENHGTEDELPNYCFPLGGVINTETLTKVKP------GWEKDATEFSDKNEIRVGNNFAMEINLNANLWRNFLYSNIALYLPDKLKYSPSNVKISDNPNTYDYMNKRVVAPGLVDCYINLGARWSLDYMDNVNPFNHHRNAGLRYRSMLLGNGRYVPFHIQVPQKFFAIKNLLLLPGSYTYEWNFRKDVNMVLQSSLGNDLRVDGASIKFDSICLYATFFPMAHNTASTLEAMLRNDTNDQSFNDYLSAANMLYPIPANATNVPISIPSRNWAAFRGWAFTRLKTKETPSLGSGYDPYYTYSGSIPYLDGTFYLNHTFKKVAITFDSSVSWPGNDRLLTPNEFEIKRSVDGEGYNVAQCNMTKDWFLVQMLANYNIGYQGFYIPESYKDRMYSFFRNFQPMSRQVVDDTKYKDYQQVGILHQHNNSGFVGYLAPTMREGQAYPANFPYPLIGKTAVDSITQKKFLCDRTLWRIPFSSNFMSMGALTDLGQNLLYANSAHALDMTFEVDPMDEPTLLYVLFEVFDVVRVHRPHRGVIETVYLRTPFSA 946
                                    16        26        36        46        56        66        76        86        96       106       116       126       136         -         -       166       176       186|   |  196       206       216       226       236       246   |     -|      266   |     -  |    286       296       306       316       326       336       346       356       366       376       386       396       406       416       426   |     -|      446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806       816       826       836       846       856       866       876       886       896       906       916       926       936       946
                                                                                                                                                           136                          165                   187 191                                                        250    257          270      279                                                                                                                                                    430    437

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) (278)

Superfamily: Group II dsDNA viruses VP (10)

Family: Adenovirus hexon (4)

Protein domain: Adenovirus hexon (4)

Human adenovirus type 5 [TaxId: 28285] (3)

1a	d3tg7a1	A:7-636
1b	d3tg7a2	A:637-946

(no "CATH Domain" information available for 3TG7)

(no "Pfam Domain" information available for 3TG7)

Asymmetric Unit(hide GO term definitions)

Chain A (CAPSH_ADE05 | P04133)

molecular function
	GO:0005198	structural molecule activity	The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
	GO:0075521	microtubule-dependent intracellular transport of viral material towards nucleus	The directed movement of a virus, or part of a virus, towards the host cell nucleus using host microtubules.
	GO:0075606	transport of viral material towards nucleus	The directed movement of a virus, or part of a virus, towards the host cell nucleus. The process begins after viral entry, and ends when the viral material is at the nuclear membrane.
	GO:0046718	viral entry into host cell	The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
	GO:0039623	T=25 icosahedral viral capsid	The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=25 symmetry. The T=25 capsid is composed of 12 pentameric and 240 hexameric capsomeres.
	GO:0042025	host cell nucleus	A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0019028	viral capsid	The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
	GO:0019012	virion	The complete fully infectious extracellular virus particle.

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	Ligands, Modified Residues, Ions
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	Sites
(no "Sites" information available for 3tg7)

	Cis Peptide Bonds
		Gln A:200 - Pro A:201	[ RasMol ]
		Phe A:845 - Pro A:846	[ RasMol ]
		Thr A:942 - Pro A:943	[ RasMol ]
		Trp A:730 - Pro A:731	[ RasMol ]

Biological Unit
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	3tg7
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	CAPSH_ADE05 \| P04133	:	1p30 3iyn 4cwu 4v4u 5ldn

(no "Related Entries Specified in the PDB File" available for 3TG7)

Description

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Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (1, 1)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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