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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE GLYCOSIDE HYDROLASE (BDI_3141) FROM PARABACTEROIDES DISTASONIS ATCC 8503 AT 1.70 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  04 Aug 11  (Deposition) - 24 Aug 11  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  5-Bladed Beta-Propeller, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Glycoside Hydrolase (Bdi_3141) From Parabacteroides Distasonis Atcc 8503 At 1. 7 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL GLYCOSIDE HYDROLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: SEQUENCE DATABASE RESIDUES 32-386
    Gene: BDI_3141
    Organism Scientific: PARABACTEROIDES DISTASONIS
    Organism Taxid: 435591
    Strain: ATCC 8503 / DSM 20701 / NCTC 11152

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 22)

Asymmetric/Biological Unit (5, 22)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2EDO13Ligand/Ion1,2-ETHANEDIOL
3MG1Ligand/IonMAGNESIUM ION
4MSE4Mod. Amino AcidSELENOMETHIONINE
5UNL2Ligand/IonUNKNOWN LIGAND

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:71 , ASN A:385 , PHE A:386 , HOH A:622 , HOH A:623 , HOH A:624BINDING SITE FOR RESIDUE MG A 389
02AC2SOFTWAREPRO A:67 , TYR A:133 , ARG A:361 , HOH A:698 , HOH A:721BINDING SITE FOR RESIDUE ACT A 390
03AC3SOFTWAREPRO A:333 , GLN A:336 , HOH A:720BINDING SITE FOR RESIDUE ACT A 391
04AC4SOFTWARELEU A:260 , LYS A:261 , ARG A:266 , SER A:267 , HOH A:432BINDING SITE FOR RESIDUE EDO A 392
05AC5SOFTWAREASP A:286 , ASP A:319 , VAL A:320BINDING SITE FOR RESIDUE EDO A 393
06AC6SOFTWAREALA A:85 , THR A:86 , ILE A:153 , GLN A:220 , PRO A:280 , LEU A:357 , HOH A:407 , HOH A:426 , HOH A:494 , HOH A:658BINDING SITE FOR RESIDUE EDO A 394
07AC7SOFTWARELYS A:129 , TYR A:359 , TYR A:360 , ARG A:361 , ASN A:362 , HOH A:428 , HOH A:723BINDING SITE FOR RESIDUE EDO A 395
08AC8SOFTWAREARG A:174 , LEU A:175 , PRO A:191 , ALA A:192 , PHE A:193 , PHE A:201 , GLU A:204 , THR A:206 , HOH A:679BINDING SITE FOR RESIDUE EDO A 396
09AC9SOFTWAREASN A:142 , PRO A:191 , GLU A:194 , LYS A:202 , ASP A:203BINDING SITE FOR RESIDUE EDO A 397
10BC1SOFTWARELYS A:91 , THR A:117 , HOH A:546BINDING SITE FOR RESIDUE EDO A 398
11BC2SOFTWAREPHE A:132 , TYR A:133 , TRP A:186 , LYS A:188 , HOH A:638 , HOH A:648BINDING SITE FOR RESIDUE EDO A 399
12BC3SOFTWAREGLY A:268 , ASP A:303 , LYS A:325 , ASP A:331 , HOH A:613BINDING SITE FOR RESIDUE EDO A 400
13BC4SOFTWAREGLU A:149 , TRP A:168 , PRO A:173 , LYS A:207BINDING SITE FOR RESIDUE EDO A 401
14BC5SOFTWAREVAL A:225 , ASN A:226 , PRO A:323 , EDO A:403BINDING SITE FOR RESIDUE EDO A 402
15BC6SOFTWARELYS A:301 , EDO A:402BINDING SITE FOR RESIDUE EDO A 403
16BC7SOFTWAREVAL A:225 , ASN A:226 , VAL A:320BINDING SITE FOR RESIDUE EDO A 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3TAW)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asn A:54 -Pro A:55
2Cys A:144 -Pro A:145

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3TAW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3TAW)

(-) Exons   (0, 0)

(no "Exon" information available for 3TAW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:349
 aligned with A6LGN3_PARD8 | A6LGN3 from UniProtKB/TrEMBL  Length:386

    Alignment length:349
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377         
         A6LGN3_PARD8    38 SETAWCLDGFERPTGVNPVIKPLPTKFYCPMREDSVAWEESDTFNPAATIYDGKIVVMYRAEDNSAQGIGSRTSRLGYATSTDGIHFERDTKPAFYPAKDNQAENECPGGTEDPRIAMTEDGTYVLLYTQWNRKVPRLAVATSKDLKHWTKFGPAFEKAYNGKFKDEATKSASLVTTLKGDKQVIAKVNGKYFMYWGEKNVYAATSDNLIDWDPLLDENGELLKLFSPRSGYFDSQLTECGPPAILTKDGIVLLYNGKNEPGEKGDTAYPANSYCAGQALFDVNNPTKLIGRLDKPFLQPTDDFEKSGQYPAGTVFVEGLVYYRNKWYLYYGCADSFVAVAVSDKQLNF 386
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........................eeee....eeee....eeeeeeeeee..eeeeeeeee...........eee..eee......ee............hhhhhh..eeeeeeeee.....eeeeeeee....eeeeeeee......eeeee...hhhhhh........eeeeeeee..eeee......eeeee.....eeeee......ee......................eeee...eeee..eeeeeeeee..hhhhh........eeeeeeee.......eeee.........hhhhhh.......eeeeeeeee..eeeeeeee...eeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3taw A  38 SETAWCLDGFERPTGVNPVIKPLPTKFYCPmREDSVAWEESDTFNPAATIYDGKIVVmYRAEDNSAQGIGSRTSRLGYATSTDGIHFERDTKPAFYPAKDNQAENECPGGTEDPRIAmTEDGTYVLLYTQWNRKVPRLAVATSKDLKHWTKFGPAFEKAYNGKFKDEATKSASLVTTLKGDKQVIAKVNGKYFmYWGEKNVYAATSDNLIDWDPLLDENGELLKLFSPRSGYFDSQLTECGPPAILTKDGIVLLYNGKNEPGEKGDTAYPANSYCAGQALFDVNNPTKLIGRLDKPFLQPTDDFEKSGQYPAGTVFVEGLVYYRNKWYLYYGCADSFVAVAVSDKQLNF 386
                                    47        57        67|       77        87       |97       107       117       127       137       147       157       167       177       187       197       207       217       227   |   237       247       257       267       277       287       297       307       317       327       337       347       357       367       377         
                                                         68-MSE                     95-MSE                                                     155-MSE                                                                     231-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3TAW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3TAW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3TAW)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3TAW)

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