3T9P - JenaLib

Title :   CRYSTAL STRUCTURE OF A PUTATIVE MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME FAMILY PROTEIN FROM ROSEOVARIUS

Authors :   R. Agarwal, S. Chamala, B. Evans, R. Foti, A. Gizzi, B. Hillerich, A. Kar J. Lafleur, R. Seidel, G. Villigas, W. Zencheck, S. C. Almo, S. Swamina York Structural Genomics Research Consortium (Nysgrc)

Date :   03 Aug 11 (Deposition) - 17 Aug 11 (Release) - 17 Aug 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.97

Chains :   Asym./Biol. Unit : A,B

Keywords :   Structural Genomics, Psi-Biology, New York Structural Genomics Research Consortium, Nysgrc, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Agarwal, S. C. Almo, S. Swaminathan
Crystal Structure Of A Putative Mandelate Racemase/Muconate Lactonizing Enzyme Family Protein From Roseovarius
To Be Published
PubMed: search

Compounds

Molecule 1 - MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME FAMILY PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET
	Expression System Strain	:	BL21(DE3)RIPL
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	RTM1035_01290
	Organism Scientific	:	ROSEOVARIUS SP. TM1035
	Organism Taxid	:	391613
	Strain	:	TM1035

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 7)

Sites (7, 7)

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:323	BINDING SITE FOR RESIDUE SO4 A 389
2	AC2	SOFTWARE	ARG A:67 , GLN A:384 , HOH A:560	BINDING SITE FOR RESIDUE SO4 A 390
3	AC3	SOFTWARE	HIS B:178 , ASP B:179 , PRO B:182 , HOH B:596	BINDING SITE FOR RESIDUE SO4 B 389
4	AC4	SOFTWARE	PRO B:133 , ARG B:323	BINDING SITE FOR RESIDUE SO4 B 390
5	AC5	SOFTWARE	LYS A:94 , GLU B:257 , TYR B:283 , HIS B:307	BINDING SITE FOR RESIDUE FMT B 391
6	AC6	SOFTWARE	GLU A:257 , TYR A:283 , HIS A:307 , ALA A:309 , LYS B:94	BINDING SITE FOR RESIDUE FMT A 391
7	AC7	SOFTWARE	ARG A:24 , ASP A:77 , HOH A:620 , HOH A:629 , ASP B:83 , THR B:84 , LEU B:87 , HOH B:425 , HOH B:444 , HOH B:523	BINDING SITE FOR RESIDUE GOL B 392

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:368
 aligned with A6E1Q0_9RHOB | A6E1Q0 from UniProtKB/TrEMBL  Length:366

    Alignment length:368
                              1                                                                                                                                                                                                                                                                                                                                                                             
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358        
         A6E1Q0_9RHOB     - --MRIARLETFCNEFVGFVRVTTDSGAQGWGQVSTYNADITCTIFHRQIAPHALGTDALDFADTLDLIYERELKYPGSYLRRAMTGLDTALWDMRGKLEGKPVATLLGGSPGPVRAYASSMRRDITPEDEAERFCRLRDDKGFTAFKWRVGAEAGRDHDEWPGRTEAVVPTVSRALGDGIEKLVDGNSCYSPARAIEVGKLLQDNGIGHFEEPCPYWEYDQTAAVRAALLLDVAGGEQDCEYSSWQLMLDRGAVDIVQPDVMYMGGMHRTLQVCQMAARAGLPVTPHAANLSLVTMCTMHLLRAIPNAGKYLEFSIEGPEYYPWQEGLFLGDPYRIEGGQAIVTDAPGWGVEISPTWLDSATYQVSER 366
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee....eeeeeee....eeeee....hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh....eeeeeeee......hhhhhhhhhhhhhhhhh..eeeee.............hhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eee......hhhhhhhhhhhh..eeee.....hhhhhhhhhhh....ee..hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhh........eeee......hhhhh.............eeee..........hhhhhhh.eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3t9p A  21 QSMRIARLETFCNEFVGFVRVTTDSGAQGWGQVSTYNADITCTIFHRQIAPHALGTDALDFADTLDLIYERELKYPGSYLRRAMTGLDTALWDMRGKLEGKPVATLLGGSPGPVRAYASSMRRDITPEDEAERFCRLRDDKGFTAFKWRVGAEAGRDHDEWPGRTEAVVPTVSRALGDGIEKLVDGNSCYSPARAIEVGKLLQDNGIGHFEEPCPYWEYDQTAAVRAALLLDVAGGEQDCEYSSWQLMLDRGAVDIVQPDVMYMGGMHRTLQVCQMAARAGLPVTPHAANLSLVTMCTMHLLRAIPNAGKYLEFSIEGPEYYPWQEGLFLGDPYRIEGGQAIVTDAPGWGVEISPTWLDSATYQVSER 388
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380

Chain B from PDB  Type:PROTEIN  Length:365
 aligned with A6E1Q0_9RHOB | A6E1Q0 from UniProtKB/TrEMBL  Length:366

    Alignment length:365
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360     
         A6E1Q0_9RHOB     1 MRIARLETFCNEFVGFVRVTTDSGAQGWGQVSTYNADITCTIFHRQIAPHALGTDALDFADTLDLIYERELKYPGSYLRRAMTGLDTALWDMRGKLEGKPVATLLGGSPGPVRAYASSMRRDITPEDEAERFCRLRDDKGFTAFKWRVGAEAGRDHDEWPGRTEAVVPTVSRALGDGIEKLVDGNSCYSPARAIEVGKLLQDNGIGHFEEPCPYWEYDQTAAVRAALLLDVAGGEQDCEYSSWQLMLDRGAVDIVQPDVMYMGGMHRTLQVCQMAARAGLPVTPHAANLSLVTMCTMHLLRAIPNAGKYLEFSIEGPEYYPWQEGLFLGDPYRIEGGQAIVTDAPGWGVEISPTWLDSATYQVSE 365
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee....eeeeeee....eeeee....hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh....eeeeeeee......hhhhhhhhhhhhhhhhh..eeeee.............hhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eee......hhhhhhhhhhhh..eeee.....hhhhhhhhhhh....ee..hhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhh........eeee......hhhhh.............eeee..........hhhhhhhheeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3t9p B  23 MRIARLETFCNEFVGFVRVTTDSGAQGWGQVSTYNADITCTIFHRQIAPHALGTDALDFADTLDLIYERELKYPGSYLRRAMTGLDTALWDMRGKLEGKPVATLLGGSPGPVRAYASSMRRDITPEDEAERFCRLRDDKGFTAFKWRVGAEAGRDHDEWPGRTEAVVPTVSRALGDGIEKLVDGNSCYSPARAIEVGKLLQDNGIGHFEEPCPYWEYDQTAAVRAALLLDVAGGEQDCEYSSWQLMLDRGAVDIVQPDVMYMGGMHRTLQVCQMAARAGLPVTPHAANLSLVTMCTMHLLRAIPNAGKYLEFSIEGPEYYPWQEGLFLGDPYRIEGGQAIVTDAPGWGVEISPTWLDSATYQVSE 387
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (3, 3)

Asymmetric/Biological Unit(show GO term definitions)

Chain A,B (A6E1Q0_9RHOB | A6E1Q0)

molecular function
	GO:0003824	catalytic activity
	GO:0046872	metal ion binding
biological process
	GO:0008152	metabolic process

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Description