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(-) Description

Title :  PHOB(E)-SIGMA70(4)-(RNAP-BETHA-FLAP-TIP-HELIX)-DNA TRANSCRIPTION ACTIVATION SUB-COMPLEX
 
Authors :  A. G. Blanco, A. Canals, J. Bernues, M. Sola, M. Coll
Date :  29 Jul 11  (Deposition) - 21 Sep 11  (Release) - 29 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  4.33
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,q,1,2,3,4,5,6,7,8,9
Biol. Unit 1:  A,B,C,D,q  (1x)
Biol. Unit 2:  E,F,G,H,o  (1x)
Biol. Unit 3:  I,J,K,L  (1x)
Biol. Unit 4:  M,N,O,P  (1x)
Biol. Unit 5:  R,S,T,U  (1x)
Biol. Unit 6:  V,W,X,Y  (1x)
Biol. Unit 7:  Z,1,2,3  (1x)
Biol. Unit 8:  4,5,6,7  (1x)
Biol. Unit 9:  a,b,8,9  (1x)
Biol. Unit 10:  c,d,e,f  (1x)
Biol. Unit 11:  g,h,i,j  (1x)
Biol. Unit 12:  k,l,m,n  (1x)
Keywords :  Winged-Helix Motif, Transcription Activation, Dna-Binding, Transcription-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. G. Blanco, A. Canals, J. Bernues, M. Sola, M. Coll
The Structure Of A Transcription Activation Sub-Complex Reveals How Sigma-70 Is Recruited To Phob Promoters
Embo J. 2011
PubMed-ID: 21829166  |  Reference-DOI: 10.1038/EMBOJ.2011.271

(-) Compounds

Molecule 1 - PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN PHOB
    Chains: A, B, E, F, I, J, M, N, R, S, V, W, Z, 1, 4, 5, 8, 9, c, d, g, h, k, l
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PHOB, B0399, JW0389
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12
 
Molecule 2 - PHO BOX DNA (STRAND 1)
    Chains: C, G, K, O, T, X, 2, 6, a, e, i, m
    Engineered: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Other Details: SYNTHESIZED DNA
    Synthetic: YES
 
Molecule 3 - PHO BOX DNA (STRAND 2)
    Chains: D, H, L, P, U, Y, 3, 7, b, f, j, n
    Engineered: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Other Details: SYNTHESIZED DNA
    Synthetic: YES
 
Molecule 4 - RNA POLYMERASE SIGMA FACTOR RPOD, DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA
    Chains: q, o
    EC Number: 2.7.7.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: RPOD, ALT, B3067, JW3039, EKO11_4334, RPOB
    Organism Scientific: ESCHERICHIA COLI, ESCHERICHIA COLI
    Organism Taxid: 83333, 83333
    Strain: K12
    Synonym: SIGMA-70, RNAP SUBUNIT BETA, RNA POLYMERASE SUBUNIT BETA, TRANSCRIPTASE SUBUNIT BETA

 Structural Features

(-) Chains, Units

  1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950
Asymmetric Unit : ABCDEFGHIJKLMNOPRSTUVWXYZabcdefghijklmnoq123456789
Biological Unit 1 (1x): ABCD                                    q         
Biological Unit 2 (1x):     EFGH                               o          
Biological Unit 3 (1x):         IJKL                                      
Biological Unit 4 (1x):             MNOP                                  
Biological Unit 5 (1x):                 RSTU                              
Biological Unit 6 (1x):                     VWXY                          
Biological Unit 7 (1x):                         Z                123      
Biological Unit 8 (1x):                                             4567  
Biological Unit 9 (1x):                          ab                     89
Biological Unit 10 (1x):                            cdef                   
Biological Unit 11 (1x):                                ghij               
Biological Unit 12 (1x):                                    klmn           

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3T72)

(-) Sites  (0, 0)

(no "Site" information available for 3T72)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3T72)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3T72)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3T72)

(-) PROSITE Motifs  (2, 26)

Asymmetric Unit (2, 26)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPR_PHOBPS51755 OmpR/PhoB-type DNA-binding domain profile.PHOB_ECOLI129-227
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  241:129-227
4:129-227
5:129-227
8:129-227
9:129-227
A:129-227
B:129-227
E:129-227
F:129-227
I:129-227
J:129-227
M:129-227
N:129-227
R:129-227
S:129-227
V:129-227
W:129-227
Z:129-227
c:129-227
d:129-227
g:129-227
h:129-227
k:129-227
l:129-227
2SIGMA70_2PS00716 Sigma-70 factors family signature 2.RPOD_ECOLI572-598
 		  2o:572-598
q:572-598
Biological Unit 1 (2, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPR_PHOBPS51755 OmpR/PhoB-type DNA-binding domain profile.PHOB_ECOLI129-227
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  2-
-
-
-
-
A:129-227
B:129-227
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
2SIGMA70_2PS00716 Sigma-70 factors family signature 2.RPOD_ECOLI572-598
 		  1-
q:572-598
Biological Unit 2 (2, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPR_PHOBPS51755 OmpR/PhoB-type DNA-binding domain profile.PHOB_ECOLI129-227
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  2-
-
-
-
-
-
-
E:129-227
F:129-227
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
2SIGMA70_2PS00716 Sigma-70 factors family signature 2.RPOD_ECOLI572-598
 		  1o:572-598
-
Biological Unit 3 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPR_PHOBPS51755 OmpR/PhoB-type DNA-binding domain profile.PHOB_ECOLI129-227
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  2-
-
-
-
-
-
-
-
-
I:129-227
J:129-227
-
-
-
-
-
-
-
-
-
-
-
-
-
2SIGMA70_2PS00716 Sigma-70 factors family signature 2.RPOD_ECOLI572-598
 		  0-
-
Biological Unit 4 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPR_PHOBPS51755 OmpR/PhoB-type DNA-binding domain profile.PHOB_ECOLI129-227
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  2-
-
-
-
-
-
-
-
-
-
-
M:129-227
N:129-227
-
-
-
-
-
-
-
-
-
-
-
2SIGMA70_2PS00716 Sigma-70 factors family signature 2.RPOD_ECOLI572-598
 		  0-
-
Biological Unit 5 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPR_PHOBPS51755 OmpR/PhoB-type DNA-binding domain profile.PHOB_ECOLI129-227
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  2-
-
-
-
-
-
-
-
-
-
-
-
-
R:129-227
S:129-227
-
-
-
-
-
-
-
-
-
2SIGMA70_2PS00716 Sigma-70 factors family signature 2.RPOD_ECOLI572-598
 		  0-
-
Biological Unit 6 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPR_PHOBPS51755 OmpR/PhoB-type DNA-binding domain profile.PHOB_ECOLI129-227
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  2-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
V:129-227
W:129-227
-
-
-
-
-
-
-
2SIGMA70_2PS00716 Sigma-70 factors family signature 2.RPOD_ECOLI572-598
 		  0-
-
Biological Unit 7 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPR_PHOBPS51755 OmpR/PhoB-type DNA-binding domain profile.PHOB_ECOLI129-227
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  21:129-227
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
Z:129-227
-
-
-
-
-
-
2SIGMA70_2PS00716 Sigma-70 factors family signature 2.RPOD_ECOLI572-598
 		  0-
-
Biological Unit 8 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPR_PHOBPS51755 OmpR/PhoB-type DNA-binding domain profile.PHOB_ECOLI129-227
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  2-
4:129-227
5:129-227
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
2SIGMA70_2PS00716 Sigma-70 factors family signature 2.RPOD_ECOLI572-598
 		  0-
-
Biological Unit 9 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPR_PHOBPS51755 OmpR/PhoB-type DNA-binding domain profile.PHOB_ECOLI129-227
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  2-
-
-
8:129-227
9:129-227
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
2SIGMA70_2PS00716 Sigma-70 factors family signature 2.RPOD_ECOLI572-598
 		  0-
-
Biological Unit 10 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPR_PHOBPS51755 OmpR/PhoB-type DNA-binding domain profile.PHOB_ECOLI129-227
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  2-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
c:129-227
d:129-227
-
-
-
-
2SIGMA70_2PS00716 Sigma-70 factors family signature 2.RPOD_ECOLI572-598
 		  0-
-
Biological Unit 11 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPR_PHOBPS51755 OmpR/PhoB-type DNA-binding domain profile.PHOB_ECOLI129-227
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  2-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
g:129-227
h:129-227
-
-
2SIGMA70_2PS00716 Sigma-70 factors family signature 2.RPOD_ECOLI572-598
 		  0-
-
Biological Unit 12 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPR_PHOBPS51755 OmpR/PhoB-type DNA-binding domain profile.PHOB_ECOLI129-227
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  2-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
k:129-227
l:129-227
2SIGMA70_2PS00716 Sigma-70 factors family signature 2.RPOD_ECOLI572-598
 		  0-
-

(-) Exons   (0, 0)

(no "Exon" information available for 3T72)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain 1 from PDB  Type:PROTEIN  Length:102
 aligned with PHOB_ECOLI | P0AFJ5 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:102
                                   137       147       157       167       177       187       197       207       217       227  
           PHOB_ECOLI   128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPR_PHOB  PDB: 1:129-227 UniProt: 129-227                                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3t72 1 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
                                   137       147       157       167       177       187       197       207       217       227  


Chain 2 from PDB  Type:DNA  Length:26
                                                          
                 3t72 2   1 TGGCTGTCATAAAGTTGTCACAAAAG  26
                                    10        20      


Chain 3 from PDB  Type:DNA  Length:26
                                                          
                 3t72 3   1 CACTTTTGTGACAACTTTATGACAGC  26
                                    10        20      


Chain 4 from PDB  Type:PROTEIN  Length:102
 aligned with PHOB_ECOLI | P0AFJ5 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:102
                                   137       147       157       167       177       187       197       207       217       227  
           PHOB_ECOLI   128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPR_PHOB  PDB: 4:129-227 UniProt: 129-227                                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3t72 4 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
                                   137       147       157       167       177       187       197       207       217       227  


Chain 5 from PDB  Type:PROTEIN  Length:102
 aligned with PHOB_ECOLI | P0AFJ5 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:102
                                   137       147       157       167       177       187       197       207       217       227  
           PHOB_ECOLI   128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPR_PHOB  PDB: 5:129-227 UniProt: 129-227                                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3t72 5 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
                                   137       147       157       167       177       187       197       207       217       227  


Chain 6 from PDB  Type:DNA  Length:26
                                                          
                 3t72 6   1 TGGCTGTCATAAAGTTGTCACAAAAG  26
                                    10        20      


Chain 7 from PDB  Type:DNA  Length:26
                                                          
                 3t72 7   1 CACTTTTGTGACAACTTTATGACAGC  26
                                    10        20      


Chain 8 from PDB  Type:PROTEIN  Length:102
 aligned with PHOB_ECOLI | P0AFJ5 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:102
                                   137       147       157       167       177       187       197       207       217       227  
           PHOB_ECOLI   128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPR_PHOB  PDB: 8:129-227 UniProt: 129-227                                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3t72 8 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
                                   137       147       157       167       177       187       197       207       217       227  


Chain 9 from PDB  Type:PROTEIN  Length:102
 aligned with PHOB_ECOLI | P0AFJ5 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:102
                                   137       147       157       167       177       187       197       207       217       227  
           PHOB_ECOLI   128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPR_PHOB  PDB: 9:129-227 UniProt: 129-227                                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3t72 9 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
                                   137       147       157       167       177       187       197       207       217       227  


Chain A from PDB  Type:PROTEIN  Length:102
 aligned with PHOB_ECOLI | P0AFJ5 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:102
                                   137       147       157       167       177       187       197       207       217       227  
           PHOB_ECOLI   128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPR_PHOB  PDB: A:129-227 UniProt: 129-227                                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3t72 A 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
                                   137       147       157       167       177       187       197       207       217       227  


Chain B from PDB  Type:PROTEIN  Length:102
 aligned with PHOB_ECOLI | P0AFJ5 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:102
                                   137       147       157       167       177       187       197       207       217       227  
           PHOB_ECOLI   128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPR_PHOB  PDB: B:129-227 UniProt: 129-227                                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3t72 B 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
                                   137       147       157       167       177       187       197       207       217       227  


Chain C from PDB  Type:DNA  Length:26
                                                          
                 3t72 C   1 TGGCTGTCATAAAGTTGTCACAAAAG  26
                                    10        20      


Chain D from PDB  Type:DNA  Length:26
                                                          
                 3t72 D   1 CACTTTTGTGACAACTTTATGACAGC  26
                                    10        20      


Chain E from PDB  Type:PROTEIN  Length:102
 aligned with PHOB_ECOLI | P0AFJ5 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:102
                                   137       147       157       167       177       187       197       207       217       227  
           PHOB_ECOLI   128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPR_PHOB  PDB: E:129-227 UniProt: 129-227                                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3t72 E 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
                                   137       147       157       167       177       187       197       207       217       227  


Chain F from PDB  Type:PROTEIN  Length:102
 aligned with PHOB_ECOLI | P0AFJ5 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:102
                                   137       147       157       167       177       187       197       207       217       227  
           PHOB_ECOLI   128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPR_PHOB  PDB: F:129-227 UniProt: 129-227                                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3t72 F 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
                                   137       147       157       167       177       187       197       207       217       227  


Chain G from PDB  Type:DNA  Length:26
                                                          
                 3t72 G   1 TGGCTGTCATAAAGTTGTCACAAAAG  26
                                    10        20      


Chain H from PDB  Type:DNA  Length:26
                                                          
                 3t72 H   1 CACTTTTGTGACAACTTTATGACAGC  26
                                    10        20      


Chain I from PDB  Type:PROTEIN  Length:102
 aligned with PHOB_ECOLI | P0AFJ5 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:102
                                   137       147       157       167       177       187       197       207       217       227  
           PHOB_ECOLI   128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPR_PHOB  PDB: I:129-227 UniProt: 129-227                                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3t72 I 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
                                   137       147       157       167       177       187       197       207       217       227  


Chain J from PDB  Type:PROTEIN  Length:102
 aligned with PHOB_ECOLI | P0AFJ5 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:102
                                   137       147       157       167       177       187       197       207       217       227  
           PHOB_ECOLI   128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPR_PHOB  PDB: J:129-227 UniProt: 129-227                                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3t72 J 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
                                   137       147       157       167       177       187       197       207       217       227  


Chain K from PDB  Type:DNA  Length:26
                                                          
                 3t72 K   1 TGGCTGTCATAAAGTTGTCACAAAAG  26
                                    10        20      


Chain L from PDB  Type:DNA  Length:26
                                                          
                 3t72 L   1 CACTTTTGTGACAACTTTATGACAGC  26
                                    10        20      


Chain M from PDB  Type:PROTEIN  Length:102
 aligned with PHOB_ECOLI | P0AFJ5 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:102
                                   137       147       157       167       177       187       197       207       217       227  
           PHOB_ECOLI   128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPR_PHOB  PDB: M:129-227 UniProt: 129-227                                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3t72 M 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
                                   137       147       157       167       177       187       197       207       217       227  


Chain N from PDB  Type:PROTEIN  Length:102
 aligned with PHOB_ECOLI | P0AFJ5 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:102
                                   137       147       157       167       177       187       197       207       217       227  
           PHOB_ECOLI   128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPR_PHOB  PDB: N:129-227 UniProt: 129-227                                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3t72 N 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
                                   137       147       157       167       177       187       197       207       217       227  


Chain O from PDB  Type:DNA  Length:26
                                                          
                 3t72 O   1 TGGCTGTCATAAAGTTGTCACAAAAG  26
                                    10        20      


Chain P from PDB  Type:DNA  Length:26
                                                          
                 3t72 P   1 CACTTTTGTGACAACTTTATGACAGC  26
                                    10        20      


Chain R from PDB  Type:PROTEIN  Length:102
 aligned with PHOB_ECOLI | P0AFJ5 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:102
                                   137       147       157       167       177       187       197       207       217       227  
           PHOB_ECOLI   128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPR_PHOB  PDB: R:129-227 UniProt: 129-227                                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3t72 R 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
                                   137       147       157       167       177       187       197       207       217       227  


Chain S from PDB  Type:PROTEIN  Length:102
 aligned with PHOB_ECOLI | P0AFJ5 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:102
                                   137       147       157       167       177       187       197       207       217       227  
           PHOB_ECOLI   128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPR_PHOB  PDB: S:129-227 UniProt: 129-227                                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3t72 S 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
                                   137       147       157       167       177       187       197       207       217       227  


Chain T from PDB  Type:DNA  Length:26
                                                          
                 3t72 T   1 TGGCTGTCATAAAGTTGTCACAAAAG  26
                                    10        20      


Chain U from PDB  Type:DNA  Length:26
                                                          
                 3t72 U   1 CACTTTTGTGACAACTTTATGACAGC  26
                                    10        20      


Chain V from PDB  Type:PROTEIN  Length:102
 aligned with PHOB_ECOLI | P0AFJ5 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:102
                                   137       147       157       167       177       187       197       207       217       227  
           PHOB_ECOLI   128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPR_PHOB  PDB: V:129-227 UniProt: 129-227                                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3t72 V 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
                                   137       147       157       167       177       187       197       207       217       227  


Chain W from PDB  Type:PROTEIN  Length:102
 aligned with PHOB_ECOLI | P0AFJ5 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:102
                                   137       147       157       167       177       187       197       207       217       227  
           PHOB_ECOLI   128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPR_PHOB  PDB: W:129-227 UniProt: 129-227                                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3t72 W 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
                                   137       147       157       167       177       187       197       207       217       227  


Chain X from PDB  Type:DNA  Length:26
                                                          
                 3t72 X   1 TGGCTGTCATAAAGTTGTCACAAAAG  26
                                    10        20      


Chain Y from PDB  Type:DNA  Length:26
                                                          
                 3t72 Y   1 CACTTTTGTGACAACTTTATGACAGC  26
                                    10        20      


Chain Z from PDB  Type:PROTEIN  Length:102
 aligned with PHOB_ECOLI | P0AFJ5 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:102
                                   137       147       157       167       177       187       197       207       217       227  
           PHOB_ECOLI   128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPR_PHOB  PDB: Z:129-227 UniProt: 129-227                                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3t72 Z 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
                                   137       147       157       167       177       187       197       207       217       227  


Chain a from PDB  Type:DNA  Length:26
                                                          
                 3t72 a   1 TGGCTGTCATAAAGTTGTCACAAAAG  26
                                    10        20      


Chain b from PDB  Type:DNA  Length:26
                                                          
                 3t72 b   1 CACTTTTGTGACAACTTTATGACAGC  26
                                    10        20      


Chain c from PDB  Type:PROTEIN  Length:102
 aligned with PHOB_ECOLI | P0AFJ5 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:102
                                   137       147       157       167       177       187       197       207       217       227  
           PHOB_ECOLI   128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPR_PHOB  PDB: c:129-227 UniProt: 129-227                                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3t72 c 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
                                   137       147       157       167       177       187       197       207       217       227  


Chain d from PDB  Type:PROTEIN  Length:102
 aligned with PHOB_ECOLI | P0AFJ5 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:102
                                   137       147       157       167       177       187       197       207       217       227  
           PHOB_ECOLI   128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPR_PHOB  PDB: d:129-227 UniProt: 129-227                                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3t72 d 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
                                   137       147       157       167       177       187       197       207       217       227  


Chain e from PDB  Type:DNA  Length:26
                                                          
                 3t72 e   1 TGGCTGTCATAAAGTTGTCACAAAAG  26
                                    10        20      


Chain f from PDB  Type:DNA  Length:26
                                                          
                 3t72 f   1 CACTTTTGTGACAACTTTATGACAGC  26
                                    10        20      


Chain g from PDB  Type:PROTEIN  Length:102
 aligned with PHOB_ECOLI | P0AFJ5 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:102
                                   137       147       157       167       177       187       197       207       217       227  
           PHOB_ECOLI   128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPR_PHOB  PDB: g:129-227 UniProt: 129-227                                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3t72 g 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
                                   137       147       157       167       177       187       197       207       217       227  


Chain h from PDB  Type:PROTEIN  Length:102
 aligned with PHOB_ECOLI | P0AFJ5 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:102
                                   137       147       157       167       177       187       197       207       217       227  
           PHOB_ECOLI   128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPR_PHOB  PDB: h:129-227 UniProt: 129-227                                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3t72 h 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
                                   137       147       157       167       177       187       197       207       217       227  


Chain i from PDB  Type:DNA  Length:26
                                                          
                 3t72 i   1 TGGCTGTCATAAAGTTGTCACAAAAG  26
                                    10        20      


Chain j from PDB  Type:DNA  Length:26
                                                          
                 3t72 j   1 CACTTTTGTGACAACTTTATGACAGC  26
                                    10        20      


Chain k from PDB  Type:PROTEIN  Length:102
 aligned with PHOB_ECOLI | P0AFJ5 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:102
                                   137       147       157       167       177       187       197       207       217       227  
           PHOB_ECOLI   128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPR_PHOB  PDB: k:129-227 UniProt: 129-227                                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3t72 k 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
                                   137       147       157       167       177       187       197       207       217       227  


Chain l from PDB  Type:PROTEIN  Length:102
 aligned with PHOB_ECOLI | P0AFJ5 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:102
                                   137       147       157       167       177       187       197       207       217       227  
           PHOB_ECOLI   128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPR_PHOB  PDB: l:129-227 UniProt: 129-227                                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3t72 l 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229
                                   137       147       157       167       177       187       197       207       217       227  


Chain m from PDB  Type:DNA  Length:26
                                                          
                 3t72 m   1 TGGCTGTCATAAAGTTGTCACAAAAG  26
                                    10        20      


Chain n from PDB  Type:DNA  Length:26
                                                          
                 3t72 n   1 CACTTTTGTGACAACTTTATGACAGC  26
                                    10        20      


Chain o from PDB  Type:PROTEIN  Length:93
 aligned with RPOB_ECOLI | P0A8V2 from UniProtKB/Swiss-Prot  Length:1342

    Alignment length:258
                                   662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902        
           RPOB_ECOLI   653 MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKA 910
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............-------..-----------------------------------...........------------.....--------......--....---------------------------------....--------------.....-------------------------.....----------...............---------........----------............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3t72 o 532 MDSATTESLRAAT-------HD-----------------------------------VLAGLTAREAK------------VLRMR--------FGIDMN--TDYT---------------------------------LEEV--------------GKQFD-------------------------VTRER----------IRQIEAKALRKLRHP---------SRSEVLRS----------TPEEKLLRAIFGEKA 910
                                   541  |      -||       -         -         -       549       | -         -|   |    -   |    |- |  |    -         -         -       574 |       -      |580|        -         -      |585|        - |     595     |   -     | 606  |      -   |   902        
                                      544     545|                                 547       557          558 562      563  568  |  |                               573  |            577 581                       582 586        587           601       602    609        896              
                                               546                                                                             569  |                                  576                                                                                                                    
                                                                                                                                  572                                                                                                                                                         


Chain o from PDB  Type:PROTEIN  Length:93
 aligned with RPOD_ECOLI | P00579 from UniProtKB/Swiss-Prot  Length:613

    Alignment length:93
                                                                                                                     613 
                                                                                                       609        610  | 
                                   541       551       561       571       581       591       601       | -       611 | 
           RPOD_ECOLI   532 LDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRS----------FLDD-   -
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................................................................................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------SIGMA70_2  PDB: o:572-598  -------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 3t72 o 532 MDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSTPEEKLLRAIFGEKA 910
                                   541       551       561       571       581       591       601       897       907   
                                                                                                       609|              
                                                                                                        896              


Chain q from PDB  Type:PROTEIN  Length:93
 aligned with RPOB_ECOLI | P0A8V2 from UniProtKB/Swiss-Prot  Length:1342

    Alignment length:258
                                   662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902        
           RPOB_ECOLI   653 MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKA 910
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............-------..-----------------------------------...........------------.....--------......--....---------------------------------....--------------.....-------------------------.....----------...............---------........----------............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3t72 q 532 MDSATTESLRAAT-------HD-----------------------------------VLAGLTAREAK------------VLRMR--------FGIDMN--TDYT---------------------------------LEEV--------------GKQFD-------------------------VTRER----------IRQIEAKALRKLRHP---------SRSEVLRS----------TPEEKLLRAIFGEKA 910
                                   541  |      -||       -         -         -       549       | -         -|   |    -   |    |- |  |    -         -         -       574 |       -      |580|        -         -      |585|        - |     595     |   -     | 606  |      -   |   902        
                                      544     545|                                 547       557          558 562      563  568  |  |                               573  |            577 581                       582 586        587           601       602    609        896              
                                               546                                                                             569  |                                  576                                                                                                                    
                                                                                                                                  572                                                                                                                                                         


Chain q from PDB  Type:PROTEIN  Length:93
 aligned with RPOD_ECOLI | P00579 from UniProtKB/Swiss-Prot  Length:613

    Alignment length:93
                                                                                                                     613 
                                                                                                       609        610  | 
                                   541       551       561       571       581       591       601       | -       611 | 
           RPOD_ECOLI   532 LDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRS----------FLDD-   -
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................................................................................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------SIGMA70_2  PDB: q:572-598  -------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 3t72 q 532 MDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSTPEEKLLRAIFGEKA 910
                                   541       551       561       571       581       591       601       897       907   
                                                                                                       609|              
                                                                                                        896
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3T72)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3T72)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3T72)

(-) Gene Ontology  (25, 40)

Asymmetric Unit(hide GO term definitions)
Chain 1,4,5,8,9,A,B,E,F,I,J,M,N,R,S,V,W,Z,c,d,g,h,k,l   (PHOB_ECOLI | P0AFJ5)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0001108    bacterial-type RNA polymerase holo enzyme binding    Interacting selectively and non-covalently with the basal transcription machinery which is composed of a bacterial-type RNA polymerase core enzyme and a sigma factor, the minimal set of factors required for formation of the preinitiation complex (PIC) by a bacterial-type RNA polymerase.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0000156    phosphorelay response regulator activity    Responds to a phosphorelay sensor to initiate a change in cell state or activity. The activity of the response regulator is regulated by transfer of a phosphate from a histidine residue in the sensor, to an aspartate residue in the response regulator. Many but not all response regulators act as transcriptional regulators to elicit a response.
biological process
    GO:0006817    phosphate ion transport    The directed movement of phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
    GO:2000142    regulation of DNA-templated transcription, initiation    Any process that modulates the frequency, rate or extent of DNA-templated transcription initiation.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain o,q   (RPOB_ECOLI | P0A8V2)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003899    DNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0032549    ribonucleoside binding    Interacting selectively and non-covalently with a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0000428    DNA-directed RNA polymerase complex    A protein complex that possesses DNA-directed RNA polymerase activity.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain o,q   (RPOD_ECOLI | P00579)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0016987    sigma factor activity    A sigma factor is the promoter specificity subunit of eubacterial-type multisubunit RNA polymerases, those whose core subunit composition is often described as alpha(2)-beta-beta-prime. (This type of multisubunit RNA polymerase complex is known to be found in eubacteria and plant plastids). Although sigma does not bind DNA on its own, when combined with the core to form the holoenzyme, this binds specifically to promoter sequences, with the sigma factor making sequence specific contacts with the promoter elements. The sigma subunit is released from the elongating form of the polymerase and is thus free to act catalytically for multiple RNA polymerase core enzymes.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0006352    DNA-templated transcription, initiation    Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
    GO:0010468    regulation of gene expression    Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0009408    response to heat    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
    GO:0001123    transcription initiation from bacterial-type RNA polymerase promoter    Any process involved in the assembly of bacterial-type RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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  3t72
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PHOB_ECOLI | P0AFJ5: 1b00 1gxp 1gxq 1qqi 1zes 2iyn 2jb9 2jba 2z33
        RPOB_ECOLI | P0A8V2: 3iyd 3lti 3lu0 3tbi 4jk1 4jk2 4kmu 4kn4 4kn7 4mex 4mey 4s20 4xsx 4xsy 4xsz 4yg2 4yln 4ylo 4ylp 4zh2 4zh3 4zh4 5byh 5ezk 5ipl 5ipm 5ipn 5ms0 5nsr 5nss 5uac 5uag 5uah 5uaj 5ual 5uaq 5up6 5upc 5vsw 5w1s 5w1t
        RPOD_ECOLI | P00579: 1sig 1tlh 2p7v 3iyd 4jk1 4jk2 4jkr 4kmu 4kn4 4kn7 4ljz 4lk0 4lk1 4llg 4mex 4mey 4xsx 4xsy 4xsz 4yfk 4yfn 4yfx 4yg2 4yln 4ylo 4ylp 4zh2 4zh3 4zh4 5uac 5uag 5uah 5uaj 5ual 5uaq 5vsw 5w1s 5w1t

(-) Related Entries Specified in the PDB File

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