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(-) Description

Title :  FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE/PHOSPHATASE FROM THERMOPROTEUS NEUTROPHILUS, FBP-BOUND FORM
 
Authors :  J. Du, R. Say, W. Lue, G. Fuchs, O. Einsle
Date :  22 Jul 11  (Deposition) - 26 Oct 11  (Release) - 09 Nov 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.36
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (8x)
Keywords :  (Beta/Alpha)8 Tim Barrel, Fbp, F6P, Dhap, Gap, Phosphorylation, Lyase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Du, R. F. Say, W. Lu, G. Fuchs, O. Einsle
Active-Site Remodelling In The Bifunctional Fructose-1, 6-Bisphosphate Aldolase/Phosphatase.
Nature V. 478 534 2011
PubMed-ID: 21983965  |  Reference-DOI: 10.1038/NATURE10458

(-) Compounds

Molecule 1 - FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE/PHOSPHATASE
    Chains: A
    EC Number: 4.1.2.13, 3.1.3.11
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET23B
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TNEU_0133
    Organism Scientific: THERMOPROTEUS NEUTROPHILUS
    Organism Taxid: 444157
    Strain: DSM 2338 / JCM 9278 / V24STA

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (8x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
1MG4Ligand/IonMAGNESIUM ION
2P6F1Ligand/Ion1,6-DI-O-PHOSPHONO-D-FRUCTOSE
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2P6F8Ligand/Ion1,6-DI-O-PHOSPHONO-D-FRUCTOSE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:52 , ASP A:53 , ASP A:132 , LYS A:133 , ASP A:234 , MG A:410 , P6F A:412 , HOH A:474BINDING SITE FOR RESIDUE MG A 408
2AC2SOFTWAREASP A:11 , HIS A:18 , ASP A:52 , GLN A:95 , P6F A:412 , HOH A:506BINDING SITE FOR RESIDUE MG A 409
3AC3SOFTWAREASP A:233 , ASP A:234 , MG A:408 , MG A:411 , P6F A:412 , HOH A:474 , HOH A:478 , HOH A:484BINDING SITE FOR RESIDUE MG A 410
4AC4SOFTWAREASP A:233 , MG A:410 , P6F A:412 , HOH A:482 , HOH A:483 , HOH A:510BINDING SITE FOR RESIDUE MG A 411
5AC5SOFTWAREASP A:11 , HIS A:18 , ASP A:52 , TYR A:91 , GLN A:95 , SER A:103 , GLY A:104 , ASN A:105 , ASP A:132 , LYS A:133 , ASP A:233 , ASP A:234 , GLN A:242 , SER A:243 , ALA A:247 , TRP A:264 , MET A:265 , ARG A:266 , GLY A:267 , ASP A:297 , TYR A:358 , MG A:408 , MG A:409 , MG A:410 , MG A:411 , HOH A:465 , HOH A:474 , HOH A:482 , HOH A:483 , HOH A:487 , HOH A:510 , HOH A:660BINDING SITE FOR RESIDUE P6F A 412

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3T2D)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Phe A:15 -Pro A:16
2Thr A:183 -Pro A:184
3Gly A:298 -Pro A:299
4Gly A:316 -Gly A:317
5Gln A:347 -Pro A:348

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3T2D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3T2D)

(-) Exons   (0, 0)

(no "Exon" information available for 3T2D)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:390
 aligned with FBPAP_PYRNV | B1YAL1 from UniProtKB/Swiss-Prot  Length:399

    Alignment length:390
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390
          FBPAP_PYRNV     1 MRVTVSIIKADVGGFPGHAHVHPKMLEYAAAKLKEAQKRGVIIDYFVYNVGDDISLLMTHTKGEDNKDIHGLAWETFKEVTDQIAKRFKLYGAGQDLLKDAFSGNIRGMGPQVAEMEFEERPSEPIIAFAADKTEPGAFNLPLYKMFADPFTTAGLVIDPSMHEGFIFEVLDVVEHKVYLLKTPEDAYSLLGLIGTTGRYIIRKVFRRADGAPAAANSVERLSLIAGRYVGKDDPVLLVRAQSGLPAVGEVLEAFAHPHLVHGWMRGSHAGPLMPARFISVDPERRIAIGPKMTRFDGPPKVGALGFQLHEGYLEGGVDLFDDPAFDYVRQTAAQIADYIRRMGPFQPHRLPPEEMEYTALPKILAKVKPYPADQYEKDRKKYIEAVVKG 390
               SCOP domains d3t2da_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeee...........hhhhhhhhhhhhhhhhhh....eeeeeee..eeeeeeee.....hhhhhhhhhhhhhhhhhhh...........................eeeeeeee....eeeeeeeee..hhhhhhhhhhhhhhh....hhhhhhhhhh..eeeeeee....eeeeeee..hhhhhhhhhh....eeeeeeee.....eeeee.....eee..eee.....eeeee......hhhhhhhh.....eeeehhhhheeee.ee....eee....eee....hhhhh..eeeeeeeeee..eeeeeee...hhhhhhhhhhhhhhhhhhhh.........hhhhh...hhhhhhhhh...hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3t2d A   1 MRVTVSIIKADVGGFPGHAHVHPKMLEYAAAKLKEAQKRGVIIDYFVYNVGDDISLLMTHTKGEDNKDIHGLAWETFKEVTDQIAKRFKLYGAGQDLLKDAFSGNIRGMGPQVAEMEFEERPSEPIIAFAADKTEPGAFNLPLYKMFADPFTTAGLVIDPSMHEGFIFEVLDVVEHKVYLLKTPEDAYSLLGLIGTTGRYIIRKVFRRADGAPAAANSVERLSLIAGRYVGKDDPVLLVRAQSGLPAVGEVLEAFAHPHLVHGWMRGSHAGPLMPARFISVDPERRIAIGPKMTRFDGPPKVGALGFQLHEGYLEGGVDLFDDPAFDYVRQTAAQIADYIRRMGPFQPHRLPPEEMEYTALPKILAKVKPYPADQYEKDRKKYIEAVVKG 390
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3T2D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3T2D)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A   (FBPAP_PYRNV | B1YAL1)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FBPAP_PYRNV | B1YAL1: 3t2b 3t2c 3t2e 3t2f 3t2g

(-) Related Entries Specified in the PDB File

3t2b FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE/PHOSPHATASE FROM THERMOPROTEUS NEUTROPHILUS, LIGAND FREE
3t2c FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE/PHOSPHATASE FROM THERMOPROTEUS NEUTROPHILUS, DHAP-BOUND FORM
3t2e FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE/PHOSPHATASE FROM THERMOPROTEUS NEUTROPHILUS, F6P-BOUND FORM
3t2f FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE/PHOSPHATASE FROM THERMOPROTEUS NEUTROPHILUS, SOAKED WITH EDTA AND DHAP
3t2g FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE/PHOSPHATASE FROM THERMOPROTEUS NEUTROPHILUS, Y229F VARIANT WITH DHAP