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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PROTEASE + PDZ1 DOMAIN OF DEGQ FROM ESCHERICHIA COLI
 
Authors :  J. Sawa, H. Malet, T. Krojer, F. Canellas, M. Ehrmann, T. Clausen
Date :  11 Jul 11  (Deposition) - 27 Jul 11  (Release) - 11 Jan 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Z
Biol. Unit 1:  A,B,C,M,N,O,Z  (1x)
Biol. Unit 2:  D,E,F,P,Q,R  (1x)
Biol. Unit 3:  G,H,I,S,T,U  (1x)
Biol. Unit 4:  J,K,L,V,W,X  (1x)
Biol. Unit 5:  A (1x),B (1x),C (1x),D (1x),E (1x),F (1x),G (1x),H (1x),I (1x),J (1x),K (1x),L (1x),M (1x),N (1x),O (1x),P (1x),Q (1x),R (1x),S (1x),T (1x),U (1x),V (1x),W (1x),X (1x),Z (1x)
Keywords :  Serine Protease, Pdz Domain, Protease, Chaperone, Degp, Degq, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Sawa, H. Malet, T. Krojer, F. Canellas, M. Ehrmann, T. Clausen
Molecular Adaptation Of The Degq Protease To Exert Protein Quality Control In The Bacterial Cell Envelope.
J. Biol. Chem. V. 286 30680 2011
PubMed-ID: 21685389  |  Reference-DOI: 10.1074/JBC.M111.243832

(-) Compounds

Molecule 1 - PROTEASE DEGQ
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    EC Number: 3.4.21.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 28-364
    Gene: DEGQ, HHOA, B3234, JW3203
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12
 
Molecule 2 - PEPTIDE (UNK)
    Chains: M, N, O, P, Q, R, S, T, U, V, W, X, Z
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  12345678910111213141516171819202122232425
Asymmetric Unit : ABCDEFGHIJKLMNOPQRSTUVWXZ
Biological Unit 1 (1x): ABC         MNO         Z
Biological Unit 2 (1x):    DEF         PQR       
Biological Unit 3 (1x):       GHI         STU    
Biological Unit 4 (1x):          JKL         VWX 
Biological Unit 5 (1x): A (1x)B (1x)C (1x)D (1x)E (1x)F (1x)G (1x)H (1x)I (1x)J (1x)K (1x)L (1x)M (1x)N (1x)O (1x)P (1x)Q (1x)R (1x)S (1x)T (1x)U (1x)V (1x)W (1x)X (1x)Z (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 67)

Asymmetric Unit (1, 67)
No.NameCountTypeFull Name
1UNK67Mod. Amino Acid
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1UNK-1Mod. Amino Acid
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1UNK-1Mod. Amino Acid
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1UNK-1Mod. Amino Acid
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1UNK-1Mod. Amino Acid
Biological Unit 5 (0, 0)
No.NameCountTypeFull Name
1UNK-1Mod. Amino Acid

(-) Sites  (0, 0)

(no "Site" information available for 3STJ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3STJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3STJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3STJ)

(-) PROSITE Motifs  (1, 24)

Asymmetric Unit (1, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PDZPS50106 PDZ domain profile.DEGQ_ECOLI258-349
 
 
 
 
 
 
 
 
 
 
 
355-447
 
 
 
 
 
 
 
 
 
 
 		  24A:231-322
B:231-322
C:231-322
D:231-322
E:231-322
F:231-322
G:231-322
H:231-322
I:231-322
J:231-322
K:231-322
L:231-322
A:328-334
B:328-334
C:328-334
D:328-334
E:328-334
F:328-334
G:328-334
H:328-334
I:328-334
J:328-334
K:328-334
L:328-334
Biological Unit 1 (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PDZPS50106 PDZ domain profile.DEGQ_ECOLI258-349
 
 
 
 
 
 
 
 
 
 
 
355-447
 
 
 
 
 
 
 
 
 
 
 		  6A:231-322
B:231-322
C:231-322
-
-
-
-
-
-
-
-
-
A:328-334
B:328-334
C:328-334
-
-
-
-
-
-
-
-
-
Biological Unit 2 (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PDZPS50106 PDZ domain profile.DEGQ_ECOLI258-349
 
 
 
 
 
 
 
 
 
 
 
355-447
 
 
 
 
 
 
 
 
 
 
 		  6-
-
-
D:231-322
E:231-322
F:231-322
-
-
-
-
-
-
-
-
-
D:328-334
E:328-334
F:328-334
-
-
-
-
-
-
Biological Unit 3 (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PDZPS50106 PDZ domain profile.DEGQ_ECOLI258-349
 
 
 
 
 
 
 
 
 
 
 
355-447
 
 
 
 
 
 
 
 
 
 
 		  6-
-
-
-
-
-
G:231-322
H:231-322
I:231-322
-
-
-
-
-
-
-
-
-
G:328-334
H:328-334
I:328-334
-
-
-
Biological Unit 4 (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PDZPS50106 PDZ domain profile.DEGQ_ECOLI258-349
 
 
 
 
 
 
 
 
 
 
 
355-447
 
 
 
 
 
 
 
 
 
 
 		  6-
-
-
-
-
-
-
-
-
J:231-322
K:231-322
L:231-322
-
-
-
-
-
-
-
-
-
J:328-334
K:328-334
L:328-334
Biological Unit 5 (1, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PDZPS50106 PDZ domain profile.DEGQ_ECOLI258-349
 
 
 
 
 
 
 
 
 
 
 
355-447
 
 
 
 
 
 
 
 
 
 
 		  24A:231-322
B:231-322
C:231-322
D:231-322
E:231-322
F:231-322
G:231-322
H:231-322
I:231-322
J:231-322
K:231-322
L:231-322
A:328-334
B:328-334
C:328-334
D:328-334
E:328-334
F:328-334
G:328-334
H:328-334
I:328-334
J:328-334
K:328-334
L:328-334

(-) Exons   (0, 0)

(no "Exon" information available for 3STJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:300
 aligned with DEGQ_ECOLI | P39099 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:324
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357    
           DEGQ_ECOLI    38 PLPSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 361
               SCOP domains d3stja1 A:11-236 automat                        ed matches                                                                                                                                                                        d3stja2 A:237-334 automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhh..eeeeeeee.------------------------..eeeeeeeeeee....eeeehhhhhh.eeeeeee.....eeeeeeeeee....eeeeee............hhhhh....eeeeeehhhhh..eeeeeeeeeeee..........eeee...........eee.....eeeeeeeee.........eeeeehhhhhhhhhhhhhhh....ee..eeeee.hhhhhhhh.......eeeeee...hhhhhhh.....ee.ee..ee..hhhhhhhhhhh.....eeeeeeee..eeeeeeee.ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDZ  PDB: A:231-322 UniProt: 258-349                                                        -----PDZ     PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3stj A  11 PLPSLAPMLEKVLPAVVSVRVEGT------------------------QPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 334
                                    20        30   |     -         -        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
                                                  34                       59                                                                                                                                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:300
 aligned with DEGQ_ECOLI | P39099 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:324
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357    
           DEGQ_ECOLI    38 PLPSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 361
               SCOP domains d3stjb1 B:11-236 automat                        ed matches                                                                                                                                                                        d3stjb2 B:237-334 automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhh..eeeeeeee.------------------------..eeeeeeeeeee....eeeehhhhhh.eeeeeee.....eeeeeeeeee....eeeeee............hhhhh....eeeeeehhhhh..eeeeeeeeeeee..........eeee...........eee.....eeeeeeee..........eeeeehhhhhhhhhhhhhhh....ee..eeeee.hhhhhhhh.......eeeeee...hhhhhhh.....eeeee..ee..hhhhhhhhhhhh....eeeeeeee..eeeeeeee.ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDZ  PDB: B:231-322 UniProt: 258-349                                                        -----PDZ     PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3stj B  11 PLPSLAPMLEKVLPAVVSVRVEGT------------------------QPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 334
                                    20        30   |     -         -        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
                                                  34                       59                                                                                                                                                                                                                                                                                   


Chain C from PDB  Type:PROTEIN  Length:300
 aligned with DEGQ_ECOLI | P39099 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:324
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357    
           DEGQ_ECOLI    38 PLPSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 361
               SCOP domains d3stjc1 C:11-236 automat                        ed matches                                                                                                                                                                        d3stjc2 C:237-334 automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhh..eeeeeeee.------------------------..eeeeeeeeeee....eeeehhhhhh.eeeeeee.....eeeeeeeeee....eeeeee............hhhhh....eeeeeehhhhh..eeeeeeeeeeee..........eeee...........eee.....eeeeeeee..........eeeeehhhhhhhhhhhhhhh....ee..eeeee.hhhhhhhh.......eeeeee...hhhhhh......ee.ee..ee..hhhhhhhhhhhh....eeeeeeee..eeeeeeee.ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDZ  PDB: C:231-322 UniProt: 258-349                                                        -----PDZ     PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3stj C  11 PLPSLAPMLEKVLPAVVSVRVEGT------------------------QPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 334
                                    20        30   |     -         -        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
                                                  34                       59                                                                                                                                                                                                                                                                                   


Chain D from PDB  Type:PROTEIN  Length:300
 aligned with DEGQ_ECOLI | P39099 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:324
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357    
           DEGQ_ECOLI    38 PLPSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 361
               SCOP domains d3stjd1 D:11-236 automat                        ed matches                                                                                                                                                                        d3stjd2 D:237-334 automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhh..eeeeeeee.------------------------..eeeeeeeeeee....eeeehhhhhh.eeeeeee.....eeeeeeeeee....eeeeee............hhhhh....eeeeeehhhhh..eeeeeeeeeeee..........eeee...........eee.....eeeeeeee..........eeeeehhhhhhhhhhhhhhh....ee..eeeee.hhhhhhhh.......eeeeee...hhhhhh......ee.ee..ee..hhhhhhhhhhhh....eeeeeeee..eeeeeeee.ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDZ  PDB: D:231-322 UniProt: 258-349                                                        -----PDZ     PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3stj D  11 PLPSLAPMLEKVLPAVVSVRVEGT------------------------QPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 334
                                    20        30   |     -         -        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
                                                  34                       59                                                                                                                                                                                                                                                                                   


Chain E from PDB  Type:PROTEIN  Length:300
 aligned with DEGQ_ECOLI | P39099 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:324
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357    
           DEGQ_ECOLI    38 PLPSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 361
               SCOP domains d3stje1 E:11-236 automat                        ed matches                                                                                                                                                                        d3stje2 E:237-334 automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhh..eeeeeeee.------------------------..eeeeeeeeeee....eeeehhhhhh.eeeeeee.....eeeeeeeeee....eeeeee............hhhhh....eeeeeehhhhh..eeeeeeeeeeee..........eeee...........eee.....eeeeeeee..........eeeeehhhhhhhhhhhhhhh....ee..eeeee.hhhhhhhh.......eeeeee...hhhhhhh.....ee.ee..ee..hhhhhhhhhhhh....eeeeeeee..eeeeeeee.ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDZ  PDB: E:231-322 UniProt: 258-349                                                        -----PDZ     PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3stj E  11 PLPSLAPMLEKVLPAVVSVRVEGT------------------------QPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 334
                                    20        30   |     -         -        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
                                                  34                       59                                                                                                                                                                                                                                                                                   


Chain F from PDB  Type:PROTEIN  Length:300
 aligned with DEGQ_ECOLI | P39099 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:324
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357    
           DEGQ_ECOLI    38 PLPSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 361
               SCOP domains d3stjf1 F:11-236 automat                        ed matches                                                                                                                                                                        d3stjf2 F:237-334 automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhh..eeeeeeee.------------------------..eeeeeeeeeee....eeeehhhhhh.eeeeeee.....eeeeeeeeee....eeeeee............hhhhh....eeeeeehhhhh..eeeeeeeeeeee..........eeee...........eee.....eeeeeeee..........eeeeehhhhhhhhhhhhhhh....ee..eeeee.hhhhhhhh.......eeeeee...hhhhhhh.....ee.ee..ee..hhhhhhhhhhhh....eeeeeeee..eeeeeeee.ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDZ  PDB: F:231-322 UniProt: 258-349                                                        -----PDZ     PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3stj F  11 PLPSLAPMLEKVLPAVVSVRVEGT------------------------QPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 334
                                    20        30   |     -         -        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
                                                  34                       59                                                                                                                                                                                                                                                                                   


Chain G from PDB  Type:PROTEIN  Length:300
 aligned with DEGQ_ECOLI | P39099 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:324
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357    
           DEGQ_ECOLI    38 PLPSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 361
               SCOP domains d3stjg1 G:11-236 automat                        ed matches                                                                                                                                                                        d3stjg2 G:237-334 automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhh..eeeeeeee.------------------------..eeeeeeeeeee....eeeehhhhhh.eeeeeee.....eeeeeeeeee....eeeeee............hhhhh....eeeeeehhhhh..eeeeeeeeeeee..........eeee...........eee.....eeeeeeee..........eeeeehhhhhhhhhhhhhhh....ee..eeeee.hhhhhhhh.......eeeeee...hhhhhh......ee.ee..ee..hhhhhhhhhhhh....eeeeeeee..eeeeeeee.ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDZ  PDB: G:231-322 UniProt: 258-349                                                        -----PDZ     PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3stj G  11 PLPSLAPMLEKVLPAVVSVRVEGT------------------------QPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 334
                                    20        30   |     -         -        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
                                                  34                       59                                                                                                                                                                                                                                                                                   


Chain H from PDB  Type:PROTEIN  Length:300
 aligned with DEGQ_ECOLI | P39099 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:324
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357    
           DEGQ_ECOLI    38 PLPSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 361
               SCOP domains d3stjh1 H:11-236 automat                        ed matches                                                                                                                                                                        d3stjh2 H:237-334 automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhh..eeeeeeee.------------------------..eeeeeeeeeee....eeeehhhhhh.eeeeeee.....eeeeeeeeee....eeeeee............hhhhh....eeeeeehhhhh..eeeeeeeeeeee..........eeee...........eee.....eeeeeeee..........eeeeehhhhhhhhhhhhhhh....ee..eeeee.hhhhhhhh.......eeeeee...hhhhhhh.....ee.ee..ee..hhhhhhhhhhhh....eeeeeeee..eeeeeeee.ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDZ  PDB: H:231-322 UniProt: 258-349                                                        -----PDZ     PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3stj H  11 PLPSLAPMLEKVLPAVVSVRVEGT------------------------QPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 334
                                    20        30   |     -         -        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
                                                  34                       59                                                                                                                                                                                                                                                                                   


Chain I from PDB  Type:PROTEIN  Length:300
 aligned with DEGQ_ECOLI | P39099 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:324
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357    
           DEGQ_ECOLI    38 PLPSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 361
               SCOP domains d3stji1 I:11-236 automat                        ed matches                                                                                                                                                                        d3stji2 I:237-334 automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhh..eeeeeeee.------------------------..eeeeeeeeeee....eeeehhhhhh.eeeeeee.....eeeeeeeeee....eeeeee............hhhhh....eeeeeehhhhh..eeeeeeeeeeee..........eeee...........eee.....eeeeeeee..........eeeeehhhhhhhhhhhhhhh....ee..eeeee.hhhhhhhh.......eeeeee...hhhhhhh.....ee.ee..ee..hhhhhhhhhhhh....eeeeeeee..eeeeeeee.ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDZ  PDB: I:231-322 UniProt: 258-349                                                        -----PDZ     PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3stj I  11 PLPSLAPMLEKVLPAVVSVRVEGT------------------------QPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 334
                                    20        30   |     -         -        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
                                                  34                       59                                                                                                                                                                                                                                                                                   


Chain J from PDB  Type:PROTEIN  Length:300
 aligned with DEGQ_ECOLI | P39099 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:324
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357    
           DEGQ_ECOLI    38 PLPSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 361
               SCOP domains d3stjj1 J:11-236 automat                        ed matches                                                                                                                                                                        d3stjj2 J:237-334 automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhh..eeeeeeee.------------------------..eeeeeeeeeee....eeeehhhhhh.eeeeeee.....eeeeeeeeee....eeeeee............hhhhh....eeeeeehhhhh..eeeeeeeeeeee..........eeee...........eee.....eeeeeeee..........eeeeehhhhhhhhhhhhhhh....ee..eeeee.hhhhhhhh.......eeeeee...hhhhhhh.....ee.ee..ee..hhhhhhhhhhhh....eeeeeeee..eeeeeeee.ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDZ  PDB: J:231-322 UniProt: 258-349                                                        -----PDZ     PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3stj J  11 PLPSLAPMLEKVLPAVVSVRVEGT------------------------QPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 334
                                    20        30   |     -         -        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
                                                  34                       59                                                                                                                                                                                                                                                                                   


Chain K from PDB  Type:PROTEIN  Length:300
 aligned with DEGQ_ECOLI | P39099 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:324
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357    
           DEGQ_ECOLI    38 PLPSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 361
               SCOP domains d3stjk1 K:11-236 automat                        ed matches                                                                                                                                                                        d3stjk2 K:237-334 automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhh..eeeeeeee.------------------------..eeeeeeeeeee....eeeehhhhhh.eeeeeee.....eeeeeeeeee....eeeeee............hhhhh....eeeeeehhhhh..eeeeeeeeeeee..........eeee...........eee.....eeeeeeee..........eeeeehhhhhhhhhhhhhhh....ee..eeeee.hhhhhhhh.......eeeeee...hhhhhhh.....eeeee..ee..hhhhhhhhhhh.....eeeeeeee..eeeeeeee.ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDZ  PDB: K:231-322 UniProt: 258-349                                                        -----PDZ     PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3stj K  11 PLPSLAPMLEKVLPAVVSVRVEGT------------------------QPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 334
                                    20        30   |     -         -        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
                                                  34                       59                                                                                                                                                                                                                                                                                   


Chain L from PDB  Type:PROTEIN  Length:300
 aligned with DEGQ_ECOLI | P39099 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:324
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357    
           DEGQ_ECOLI    38 PLPSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 361
               SCOP domains d3stjl1 L:11-236 automat                        ed matches                                                                                                                                                                        d3stjl2 L:237-334 automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhh..eeeeeeee.------------------------..eeeeeeeeeee....eeeeehhhhh.eeeeeee.....eeeeeeeeee....eeeeee............hhhhh....eeeeeehhhhh..eeeeeeeeeeee..........eeee...........eee.....eeeeeeee..........eeeeehhhhhhhhhhhhhhh....ee..eeeee.hhhhhhhh.......eeeeee...hhhhhhh.....ee.ee..ee..hhhhhhhhhhhh....eeeeeeee..eeeeeeee.ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDZ  PDB: L:231-322 UniProt: 258-349                                                        -----PDZ     PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3stj L  11 PLPSLAPMLEKVLPAVVSVRVEGT------------------------QPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 334
                                    20        30   |     -         -        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
                                                  34                       59                                                                                                                                                                                                                                                                                   


Chain M from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..ee. Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 3stj M 401 xxxxx 405
                            |||||
                          401-UNK
                           402-UNK
                            403-UNK
                             404-UNK
                              405-UNK


Chain N from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..ee. Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 3stj N 401 xxxxx 405
                            |||||
                            |||||
                          401-UNK
                           402-UNK
                            403-UNK
                             404-UNK
                              405-UNK


Chain O from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..ee. Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 3stj O 401 xxxxx 405
                            |||||
                            |||||
                          401-UNK
                           402-UNK
                            403-UNK
                             404-UNK
                              405-UNK


Chain P from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..ee. Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 3stj P 401 xxxxx 405
                            |||||
                            |||||
                          401-UNK
                           402-UNK
                            403-UNK
                             404-UNK
                              405-UNK


Chain Q from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..ee. Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 3stj Q 401 xxxxx 405
                            |||||
                            |||||
                          401-UNK
                           402-UNK
                            403-UNK
                             404-UNK
                              405-UNK


Chain R from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..ee. Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 3stj R 401 xxxxx 405
                            |||||
                            |||||
                          401-UNK
                           402-UNK
                            403-UNK
                             404-UNK
                              405-UNK


Chain S from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..ee. Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 3stj S 401 xxxxx 405
                            |||||
                            |||||
                          401-UNK
                           402-UNK
                            403-UNK
                             404-UNK
                              405-UNK


Chain T from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..ee. Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 3stj T 401 xxxxx 405
                            |||||
                            |||||
                          401-UNK
                           402-UNK
                            403-UNK
                             404-UNK
                              405-UNK


Chain U from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..ee. Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 3stj U 401 xxxxx 405
                            |||||
                            |||||
                          401-UNK
                           402-UNK
                            403-UNK
                             404-UNK
                              405-UNK


Chain V from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..ee. Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 3stj V 401 xxxxx 405
                            |||||
                            |||||
                          401-UNK
                           402-UNK
                            403-UNK
                             404-UNK
                              405-UNK


Chain W from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..ee. Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 3stj W 401 xxxxx 405
                            |||||
                            |||||
                          401-UNK
                           402-UNK
                            403-UNK
                             404-UNK
                              405-UNK


Chain X from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..ee. Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 3stj X 401 xxxxx 405
                            |||||
                            |||||
                          401-UNK
                           402-UNK
                            403-UNK
                             404-UNK
                              405-UNK


Chain Z from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ...ee.. Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 3stj Z   0 xxxxxxx   6
                            |||||||
                            |||||||
                            0-UNK||
                             1-UNK|
                              2-UNK
                               3-UNK
                                4-UNK
                                 5-UNK
                                  6-UNK
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 24)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Fold: PDZ domain-like (299)
(-)
Superfamily: PDZ domain-like (299)
(-)
Family: automated matches (94)
(-)
Protein domain: automated matches (94)
(-)
Escherichia coli K-12 [TaxId: 83333] (1)
1ad3stja2A:237-334
1bd3stjb2B:237-334
1cd3stjk2K:237-334
1dd3stjl2L:237-334
1ed3stjc2C:237-334
1fd3stjd2D:237-334
1gd3stje2E:237-334
1hd3stjf2F:237-334
1id3stjg2G:237-334
1jd3stjh2H:237-334
1kd3stji2I:237-334
1ld3stjj2J:237-334
(-)
Fold: Trypsin-like serine proteases (1752)
(-)
Superfamily: Trypsin-like serine proteases (1752)
(-)
Family: automated matches (71)
(-)
Protein domain: automated matches (71)
(-)
Escherichia coli K-12 [TaxId: 83333] (2)
2ad3stja1A:11-236
2bd3stjb1B:11-236
2cd3stjk1K:11-236
2dd3stjl1L:11-236
2ed3stjc1C:11-236
2fd3stjd1D:11-236
2gd3stje1E:11-236
2hd3stjf1F:11-236
2id3stjg1G:11-236
2jd3stjh1H:11-236
2kd3stji1I:11-236
2ld3stjj1J:11-236

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3STJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3STJ)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (DEGQ_ECOLI | P39099)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0051603    proteolysis involved in cellular protein catabolic process    The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
cellular component
    GO:0071575    integral component of external side of plasma membrane    The component of the plasma membrane consisting of the gene products that penetrate only the external side of the membrane.
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DEGQ_ECOLI | P39099: 3sti 4a8a 4a8b 4a8c 4a9g

(-) Related Entries Specified in the PDB File

3sti