3SQM - JenaLib

Title :   CRYSTAL STRUCTURE OF GLYCOSIDE HYDROLASE FROM SYNECHOCOCCUS COMPLEXED WITH N-ACETYL-D-GLUCOSAMINE

Authors :   Y. Kim, G. Chhor, J. Bearden, A. Joachimiak, Midwest Center For Stru Genomics (Mcsg)

Date :   05 Jul 11 (Deposition) - 20 Jul 11 (Release) - 20 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Tim-Barrel, Alpha-Beta-Alpha Sandwich, Hydrolase, Cytosol (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Kim, G. Chhor, J. Bearden, A. Joachimiak
Crystal Structure Of Glycoside Hydrolase From Synechococcus Complexed With N-Acetyl-D-Glucosamine
To Be Published
PubMed: search

Compounds

Molecule 1 - GLYCOSYL HYDROLASE FAMILY 3
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21 MAGIC
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Gene	:	SYNPCC7002_A0075
	Organism Scientific	:	SYNECHOCOCCUS SP.
	Organism Taxid	:	32049
	Strain	:	PCC 7002

Structural Features

Chains, Units

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (6, 58)

Asymmetric Unit (6, 58)

No.	Name	Count	Type	Full Name
1	ACY	8	Ligand/Ion	ACETIC ACID
2	GOL	6	Ligand/Ion	GLYCEROL
3	MSE	38	Mod. Amino Acid	SELENOMETHIONINE
4	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
5	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
6	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 1 (5, 27)

No.	Name	Count	Type	Full Name
1	ACY	4	Ligand/Ion	ACETIC ACID
2	GOL	2	Ligand/Ion	GLYCEROL
3	MSE	18	Mod. Amino Acid	SELENOMETHIONINE
4	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
5	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
6	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 2 (5, 31)

No.	Name	Count	Type	Full Name
1	ACY	4	Ligand/Ion	ACETIC ACID
2	GOL	4	Ligand/Ion	GLYCEROL
3	MSE	20	Mod. Amino Acid	SELENOMETHIONINE
4	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
5	PEG	-1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
6	SO4	1	Ligand/Ion	SULFATE ION

Sites (19, 19)

Asymmetric Unit (19, 19)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ILE A:59 , ASP A:88 , ARG A:162 , LYS A:192 , HIS A:193 , HIS A:205 , MSE A:238 , ASP A:277 , HOH A:570	BINDING SITE FOR RESIDUE NAG A 540
02	AC2	SOFTWARE	SER A:330	BINDING SITE FOR RESIDUE ACY A 542
03	AC3	SOFTWARE	ARG A:25 , TRP A:40 , PRO A:308	BINDING SITE FOR RESIDUE ACY A 543
04	AC4	SOFTWARE	PHE A:531 , ILE B:59 , ASP B:88 , VAL B:158 , ARG B:162 , LYS B:192 , HIS B:193 , HIS B:197 , HIS B:205 , ASP B:277 , ALA B:278 , LEU B:306 , HOH B:561 , HOH B:610	BINDING SITE FOR RESIDUE NAG B 540
05	AC5	SOFTWARE	ARG B:35 , PRO B:38 , GLN B:39 , ALA B:42 , ASP B:43	BINDING SITE FOR RESIDUE GOL B 541
06	AC6	SOFTWARE	GLU B:111 , ARG B:114 , GLU B:166 , GLN B:170 , LYS B:378	BINDING SITE FOR RESIDUE PEG B 542
07	AC7	SOFTWARE	LYS B:227 , ALA B:228 , GLN B:231	BINDING SITE FOR RESIDUE ACY B 543
08	AC8	SOFTWARE	LEU B:279 , THR B:285 , ALA B:288 , ALA B:289 , PRO B:290 , VAL B:293 , PRO B:309	BINDING SITE FOR RESIDUE GOL B 544
09	AC9	SOFTWARE	ILE C:59 , ASP C:88 , VAL C:158 , ARG C:162 , LYS C:192 , HIS C:193 , HIS C:205 , MSE C:238 , ASP C:277 , ALA C:278 , PHE D:531	BINDING SITE FOR RESIDUE NAG C 540
10	BC1	SOFTWARE	PRO C:38 , GLN C:39 , GOL C:546	BINDING SITE FOR RESIDUE GOL C 541
11	BC2	SOFTWARE	VAL C:400 , ASP C:401 , SER C:402 , SER C:406 , PHE C:449 , LEU C:450 , ARG C:451 , GLN C:505 , HOH C:581	BINDING SITE FOR RESIDUE GOL C 542
12	BC3	SOFTWARE	GLU C:10 , GLU C:337	BINDING SITE FOR RESIDUE GOL C 543
13	BC4	SOFTWARE	GLU C:166 , LYS C:378 , TYR C:485	BINDING SITE FOR RESIDUE ACY C 544
14	BC5	SOFTWARE	ASP C:199 , SER C:212 , HIS C:213	BINDING SITE FOR RESIDUE SO4 C 545
15	BC6	SOFTWARE	ARG C:25 , TRP C:40 , MSE C:307 , PRO C:308 , PRO C:309 , GOL C:541	BINDING SITE FOR RESIDUE GOL C 546
16	BC7	SOFTWARE	PHE C:531 , ILE D:59 , ASP D:88 , LEU D:144 , ARG D:162 , LYS D:192 , HIS D:193 , HIS D:205 , MSE D:238 , ASP D:277 , HOH D:573	BINDING SITE FOR RESIDUE NAG D 540
17	BC8	SOFTWARE	VAL D:24 , ARG D:25 , TRP D:40 , PRO D:308 , HOH D:568	BINDING SITE FOR RESIDUE ACY D 541
18	BC9	SOFTWARE	MSE D:107 , GLU D:111 , GLU D:166 , TYR D:485	BINDING SITE FOR RESIDUE ACY D 542
19	CC1	SOFTWARE	ILE C:428 , SER D:402 , GLU D:430 , HOH D:552	BINDING SITE FOR RESIDUE ACY D 543

SS Bonds (0, 0)

Cis Peptide Bonds (16, 16)

Asymmetric Unit

No.	Residues
1	Ala A:145	-	Pro A:146
2	Lys A:192	-	His A:193
3	Phe A:194	-	Pro A:195
4	Phe A:354	-	Pro A:355
5	Ala B:145	-	Pro B:146
6	Lys B:192	-	His B:193
7	Phe B:194	-	Pro B:195
8	Phe B:354	-	Pro B:355
9	Ala C:145	-	Pro C:146
10	Lys C:192	-	His C:193
11	Phe C:194	-	Pro C:195
12	Phe C:354	-	Pro C:355
13	Ala D:145	-	Pro D:146
14	Lys D:192	-	His D:193
15	Phe D:194	-	Pro D:195
16	Phe D:354	-	Pro D:355

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:514
 aligned with B1XLD2_SYNP2 | B1XLD2 from UniProtKB/TrEMBL  Length:532

    Alignment length:528
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524        
         B1XLD2_SYNP2     5 PLPPVESLSLRQAIAQMIVVRGAGYLFDYERPYPQWEADQTTLQRWIEAGIGGVILLGGSAAEVAQKTKQLQSWAEIPLLIAADIEEGVGQRFRGATEFPPPMAFGEIWRTDPHQAIALAETMGATTAQEALSLGINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIRGAQQYAVLTTAKHFPGHGDTATDSHLALPTISHDDTRLNTVELPPFKAAIQGGVDAVMNAHLMIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVMGGITQFAAPDTVVVQAIAAGADILLMPPDVDGAIIAIETAIKTGQLSESRIYESVERIWQAKQKILTATPSTFPQGISGDRPETRKTVAMVLERATKHQKSLVKISSFPDNFARNLIVVDSVLKSPFLRPNCPAIAIPQRHGYAAEIVELKTLPRLQLEAIPTLIQCFLRGNPFTEKLADPIDVLQKIAAQIPLQGVIFYGSPYFLEALQTTLPEIPWWFSYGQMAIAQAEICTSLWEEAPQAAPSAAEFI 532
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhheeeeee...hhhhh.......hhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh.....eeee....hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee...............hhhhh...hhhhhhhhhhhhhhhhh....eeeeeee...................hhhhhhhhhhhhhhhhhhhh..eeee............hhhhhhhhhh...........eee.....hhhhhh..hhhhhhhhhhhhh...ee...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..--..........hhhhhhhhhhhhhhhh...--...........eeeeeee............hhhhhhhhhh.eeeeeee..hhhhh......eeeeeee..........hhhhhhhhhhhhh.eeeeeeee...hhhhhhhhh....eeee...hhhhhhhhhhhh.----------.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3sqm A   5 PLPPVESLSLRQAIAQmIVVRGAGYLFDYERPYPQWEADQTTLQRWIEAGIGGVILLGGSAAEVAQKTKQLQSWAEIPLLIAADIEEGVGQRFRGATEFPPPmAFGEIWRTDPHQAIALAETmGATTAQEALSLGINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIRGAQQYAVLTTAKHFPGHGDTATDSHLALPTISHDDTRLNTVELPPFKAAIQGGVDAVmNAHLmIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVmGGITQFAAPDTVVVQAIAAGADILLmPPDVDGAIIAIETAIKTGQLSESRIYESVERIWQAKQKILTA--STFPQGISGDRPETRKTVAmVLERATKHQ--LVKISSFPDNFARNLIVVDSVLKSPFLRPNCPAIAIPQRHGYAAEIVELKTLPRLQLEAIPTLIQCFLRGNPFTEKLADPIDVLQKIAAQIPLQGVIFYGSPYFLEALQTTLPEIPWWFSYGQmAIAQAEICTSLW----------AEFI 532
                                    14      | 24        34        44        54        64        74        84        94       104  |    114       124  |    134       144       154       164       174       184       194       204       214       224       234   |   244       254       264       274      |284       294       304  |    314       324       334       344    |  354       364      |374     | 384       394       404       414       424       434       444       454       464       474       484       494       504 |     514   |     -    |   
                                           21-MSE                                                                               107-MSE             127-MSE                                                                                                        238-MSE|                                   281-MSE                   307-MSE                                   349  |                371-MSE  380  |                                                                                                                        506-MSE     518        529   
                                                                                                                                                                                                                                                                        243-MSE                                                                                                      352                            383

Chain B from PDB  Type:PROTEIN  Length:516
 aligned with B1XLD2_SYNP2 | B1XLD2 from UniProtKB/TrEMBL  Length:532

    Alignment length:527
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       
         B1XLD2_SYNP2     6 LPPVESLSLRQAIAQMIVVRGAGYLFDYERPYPQWEADQTTLQRWIEAGIGGVILLGGSAAEVAQKTKQLQSWAEIPLLIAADIEEGVGQRFRGATEFPPPMAFGEIWRTDPHQAIALAETMGATTAQEALSLGINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIRGAQQYAVLTTAKHFPGHGDTATDSHLALPTISHDDTRLNTVELPPFKAAIQGGVDAVMNAHLMIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVMGGITQFAAPDTVVVQAIAAGADILLMPPDVDGAIIAIETAIKTGQLSESRIYESVERIWQAKQKILTATPSTFPQGISGDRPETRKTVAMVLERATKHQKSLVKISSFPDNFARNLIVVDSVLKSPFLRPNCPAIAIPQRHGYAAEIVELKTLPRLQLEAIPTLIQCFLRGNPFTEKLADPIDVLQKIAAQIPLQGVIFYGSPYFLEALQTTLPEIPWWFSYGQMAIAQAEICTSLWEEAPQAAPSAAEFI 532
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhheeeeee...hhhhh.......hhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh.....eeee....hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee...............hhhhh...hhhhhhhhhhhhhhhhh....eeeeeee...................hhhhhhhh.hhhhhhhhhh...eeee............hhhhhhhhhh...........eeee....hhhhhh..hhhhhhhhhhhhh...ee...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh---...........hhhhhhhhhhhhhhhhee..............eeeeeee............hhhhhhhhhh.eeeeeee..hhhhh......eeeeeee...........hhhhhhhhhhhh.eeeeeeee...hhhhhhhhh....eeee...hhhhhhhhhhhhhh--------..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sqm B   6 LPPVESLSLRQAIAQmIVVRGAGYLFDYERPYPQWEADQTTLQRWIEAGIGGVILLGGSAAEVAQKTKQLQSWAEIPLLIAADIEEGVGQRFRGATEFPPPmAFGEIWRTDPHQAIALAETmGATTAQEALSLGINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIRGAQQYAVLTTAKHFPGHGDTATDSHLALPTISHDDTRLNTVELPPFKAAIQGGVDAVmNAHLmIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVmGGITQFAAPDTVVVQAIAAGADILLmPPDVDGAIIAIETAIKTGQLSESRIYESVERIWQAKQKIL---PSTFPQGISGDRPETRKTVAmVLERATKHQKSLVKISSFPDNFARNLIVVDSVLKSPFLRPNCPAIAIPQRHGYAAEIVELKTLPRLQLEAIPTLIQCFLRGNPFTEKLADPIDVLQKIAAQIPLQGVIFYGSPYFLEALQTTLPEIPWWFSYGQmAIAQAEICTSLWE--------AAEFI 532
                                    15     |  25        35        45        55        65        75        85        95       105 |     115       125 |     135       145       155       165       175       185       195       205       215       225       235  |    245       255       265       275     | 285       295       305 |     315       325       335       345 |   | 355       365     | 375       385       395       405       415       425       435       445       455       465       475       485       495       505|      515   |     -  |    
                                          21-MSE                                                                               107-MSE             127-MSE                                                                                                        238-MSE|                                   281-MSE                   307-MSE                                 347 351                 371-MSE                                                                                                                                506-MSE      519      528    
                                                                                                                                                                                                                                                                       243-MSE

Chain C from PDB  Type:PROTEIN  Length:519
 aligned with B1XLD2_SYNP2 | B1XLD2 from UniProtKB/TrEMBL  Length:532

    Alignment length:532
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530  
         B1XLD2_SYNP2     1 MVMAPLPPVESLSLRQAIAQMIVVRGAGYLFDYERPYPQWEADQTTLQRWIEAGIGGVILLGGSAAEVAQKTKQLQSWAEIPLLIAADIEEGVGQRFRGATEFPPPMAFGEIWRTDPHQAIALAETMGATTAQEALSLGINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIRGAQQYAVLTTAKHFPGHGDTATDSHLALPTISHDDTRLNTVELPPFKAAIQGGVDAVMNAHLMIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVMGGITQFAAPDTVVVQAIAAGADILLMPPDVDGAIIAIETAIKTGQLSESRIYESVERIWQAKQKILTATPSTFPQGISGDRPETRKTVAMVLERATKHQKSLVKISSFPDNFARNLIVVDSVLKSPFLRPNCPAIAIPQRHGYAAEIVELKTLPRLQLEAIPTLIQCFLRGNPFTEKLADPIDVLQKIAAQIPLQGVIFYGSPYFLEALQTTLPEIPWWFSYGQMAIAQAEICTSLWEEAPQAAPSAAEFI 532
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhheeeeee...hhhhh.......hhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh.....eeee....hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee...............hhhhh...hhhhhhhhhhhhhhhhh....eeeeeee...................hhhhhhhh.hhhhhhhhhh...eeee............hhhhhhhhhh...........eeee....hhhhhh..hhhhhhhhhhhhh...ee...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh-............hhhhhhhhhhhhhhhhee..--..........eeeeeee.hhhhh......hhhhhhhhhh.eeeeeee..hhhhh......eeeeeee...........hhhhhhhhhhhh.eeeeeeee...hhhhhhhhh....eeee...hhhhhhhhhhhh.----------.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sqm C   1 mVmAPLPPVESLSLRQAIAQmIVVRGAGYLFDYERPYPQWEADQTTLQRWIEAGIGGVILLGGSAAEVAQKTKQLQSWAEIPLLIAADIEEGVGQRFRGATEFPPPmAFGEIWRTDPHQAIALAETmGATTAQEALSLGINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIRGAQQYAVLTTAKHFPGHGDTATDSHLALPTISHDDTRLNTVELPPFKAAIQGGVDAVmNAHLmIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVmGGITQFAAPDTVVVQAIAAGADILLmPPDVDGAIIAIETAIKTGQLSESRIYESVERIWQAKQKILT-TPSTFPQGISGDRPETRKTVAmVLERATKHQK--VKISSFPDNFARNLIVVDSVLKSPFLRPNCPAIAIPQRHGYAAEIVELKTLPRLQLEAIPTLIQCFLRGNPFTEKLADPIDVLQKIAAQIPLQGVIFYGSPYFLEALQTTLPEIPWWFSYGQmAIAQAEICTSLW----------AEFI 532
                            | |     10        20|       30        40        50        60        70        80        90       100      |110       120      |130       140       150       160       170       180       190       200       210       220       230       240  |    250       260       270       280|      290       300      |310       320       330       340       350       360       370|      380|  |   390       400       410       420       430       440       450       460       470       480       490       500     | 510       | -       530  
                            | |                21-MSE                                                                               107-MSE             127-MSE                                                                                                        238-MSE|                                   281-MSE                   307-MSE                                  348 |                  371-MSE   381  |                                                                                                                       506-MSE     518        529   
                            1-MSE                                                                                                                                                                                                                                           243-MSE                                                                                                    350                               384                                                                                                                                                    
                              3-MSE

Chain D from PDB  Type:PROTEIN  Length:519
 aligned with B1XLD2_SYNP2 | B1XLD2 from UniProtKB/TrEMBL  Length:532

    Alignment length:529
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523         
         B1XLD2_SYNP2     4 APLPPVESLSLRQAIAQMIVVRGAGYLFDYERPYPQWEADQTTLQRWIEAGIGGVILLGGSAAEVAQKTKQLQSWAEIPLLIAADIEEGVGQRFRGATEFPPPMAFGEIWRTDPHQAIALAETMGATTAQEALSLGINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIRGAQQYAVLTTAKHFPGHGDTATDSHLALPTISHDDTRLNTVELPPFKAAIQGGVDAVMNAHLMIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVMGGITQFAAPDTVVVQAIAAGADILLMPPDVDGAIIAIETAIKTGQLSESRIYESVERIWQAKQKILTATPSTFPQGISGDRPETRKTVAMVLERATKHQKSLVKISSFPDNFARNLIVVDSVLKSPFLRPNCPAIAIPQRHGYAAEIVELKTLPRLQLEAIPTLIQCFLRGNPFTEKLADPIDVLQKIAAQIPLQGVIFYGSPYFLEALQTTLPEIPWWFSYGQMAIAQAEICTSLWEEAPQAAPSAAEFI 532
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh.eeeeee...hhhhh.......hhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhh....eeee....hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee...............hhhhh...hhhhhhhhhhhhhhhhh....eeeeeee...................hhhhhhhhhhhhhhhhhhhh..eeee................hhhhhhh..........eeee....hhhhhh..hhhhhhhhhhhh....ee...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..--..........hhhhhhhhhhhhhhh.................eeeeeee............hhhhhhhhhh.eeeeeee.............eeeeeee...........hhhhhhhhhhhh.eeeeeeee...hhhhhhhhh....eeee...hhhhhhhhhhh...--------..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sqm D   4 APLPPVESLSLRQAIAQmIVVRGAGYLFDYERPYPQWEADQTTLQRWIEAGIGGVILLGGSAAEVAQKTKQLQSWAEIPLLIAADIEEGVGQRFRGATEFPPPmAFGEIWRTDPHQAIALAETmGATTAQEALSLGINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIRGAQQYAVLTTAKHFPGHGDTATDSHLALPTISHDDTRLNTVELPPFKAAIQGGVDAVmNAHLmIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVmGGITQFAAPDTVVVQAIAAGADILLmPPDVDGAIIAIETAIKTGQLSESRIYESVERIWQAKQKILTA--STFPQGISGDRPETRKTVAmVLERATKHQKSLVKISSFPDNFARNLIVVDSVLKSPFLRPNCPAIAIPQRHGYAAEIVELKTLPRLQLEAIPTLIQCFLRGNPFTEKLADPIDVLQKIAAQIPLQGVIFYGSPYFLEALQTTLPEIPWWFSYGQmAIAQAEICTSLWE--------AAEFI 532
                                    13       |23        33        43        53        63        73        83        93       103   |   113       123   |   133       143       153       163       173       183       193       203       213       223       233    |  243       253       263       273       283       293       303   |   313       323       333       343     | 353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503  |    513     |   -    |    
                                            21-MSE                                                                               107-MSE             127-MSE                                                                                                        238-MSE|                                   281-MSE                   307-MSE                                   349  |                371-MSE                                                                                                                                506-MSE      519      528    
                                                                                                                                                                                                                                                                         243-MSE                                                                                                      352

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (5, 5)

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		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
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		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
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	Cis Peptide Bonds
		Ala A:145 - Pro A:146	[ RasMol ]
		Ala B:145 - Pro B:146	[ RasMol ]
		Ala C:145 - Pro C:146	[ RasMol ]
		Ala D:145 - Pro D:146	[ RasMol ]
		Lys A:192 - His A:193	[ RasMol ]
		Lys B:192 - His B:193	[ RasMol ]
		Lys C:192 - His C:193	[ RasMol ]
		Lys D:192 - His D:193	[ RasMol ]
		Phe A:194 - Pro A:195	[ RasMol ]
		Phe A:354 - Pro A:355	[ RasMol ]
		Phe B:194 - Pro B:195	[ RasMol ]
		Phe B:354 - Pro B:355	[ RasMol ]
		Phe C:194 - Pro C:195	[ RasMol ]
		Phe C:354 - Pro C:355	[ RasMol ]
		Phe D:194 - Pro D:195	[ RasMol ]
		Phe D:354 - Pro D:355	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Still Images

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

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Description