Chain A from PDB Type:PROTEIN Length:619
aligned with SQHC_ALIAD | P33247 from UniProtKB/Swiss-Prot Length:631
Alignment length:619
19 29 39 49 59 69 79 89 99 109 119 129 139 149 159 169 179 189 199 209 219 229 239 249 259 269 279 289 299 309 319 329 339 349 359 369 379 389 399 409 419 429 439 449 459 469 479 489 499 509 519 529 539 549 559 569 579 589 599 609 619
SQHC_ALIAD 10 AYARTLDRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPELYETDVPPRRRGAKGGGGWIFDALDRALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIALKILDMTQHPAFIKGWEGLELYGVELDYGGWMFQASISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVDDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFCDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYKQAI 628
SCOP domains d3sqca1 A:10-36,A:308-628 d3sqca2 A:37-307 Squalene-hopene cyclase d3sqca1 A:10-36,A:308-628 Squalene-hopene cyclase SCOP domains
CATH domains 3sqcA01 A:10-35,A:308-628 3sqcA02 A:36-307 [code=1.50.10.20, no name defined] 3sqcA01 A:10-35,A:308-628 [code=1.50.10.20, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .hhhhhhhhhhhhhhh...............hhhhhhhhhhhh.....hhhhhhhhhhhhhh................hhhhhhhhhhhhhh......hhhhhhhhhhhhh.hhhh..hhhhhhhhh.....hhh.....hhhhh........hhh..hhhhhhhhhhhhhhhh.......hhh..hhh.................hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh..........hhhhhhhhhhhhh......hhhhhhhhhhhh.eee.....eee.....hhhhhhhhhhhhhhh......hhhhhhhhhhhhh......hhhh.....................hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.................hhhh..............hhhhhhhhhhhhhh......hhhhhhhhhhhhh.............hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..........hhhh............hhhhhhhhhhhhh......hhhhhhhhhhhhh.............eeee...eee....hhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TERPENE_SYNTHAS------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3sqc A 10 AYARTLDRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPELYETDVPPRRRGAKGGGGWIFDALDRALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIALKILDMTQHPAFIKGWEGLELYGVELDYGGWMFQASISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFCDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYKQAI 628
19 29 39 49 59 69 79 89 99 109 119 129 139 149 159 169 179 189 199 209 219 229 239 249 259 269 279 289 299 309 319 329 339 349 359 369 379 389 399 409 419 429 439 449 459 469 479 489 499 509 519 529 539 549 559 569 579 589 599 609 619
Chain B from PDB Type:PROTEIN Length:619
aligned with SQHC_ALIAD | P33247 from UniProtKB/Swiss-Prot Length:631
Alignment length:619
19 29 39 49 59 69 79 89 99 109 119 129 139 149 159 169 179 189 199 209 219 229 239 249 259 269 279 289 299 309 319 329 339 349 359 369 379 389 399 409 419 429 439 449 459 469 479 489 499 509 519 529 539 549 559 569 579 589 599 609 619
SQHC_ALIAD 10 AYARTLDRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPELYETDVPPRRRGAKGGGGWIFDALDRALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIALKILDMTQHPAFIKGWEGLELYGVELDYGGWMFQASISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVDDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFCDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYKQAI 628
SCOP domains d3sqcb1 B:10-36,B:308-628 d3sqcb2 B:37-307 Squalene-hopene cyclase d3sqcb1 B:10-36,B:308-628 Squalene-hopene cyclase SCOP domains
CATH domains 3sqcB01 B:10-35,B:308-628 3sqcB02 B:36-307 [code=1.50.10.20, no name defined] 3sqcB01 B:10-35,B:308-628 [code=1.50.10.20, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhhhhhhhhhhhhh...............hhhhhhhhhhhh.....hhhhhhhhhhhhhh................hhhhhhhhhhhhhh......hhhhhhhhhhhhh.hhhh..hhhhhhhhh.....hhh.....hhhhh........hhh..hhhhhhhhhhhhhhhh.......hhh..hhh.................hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh..........hhhhhhhhhhhhh......hhhhhhhhhhhh.eee.....eee.....hhhhhhhhhhhhhhh......hhhhhhhhhhhhh......hhhh.....................hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.................hhhh..............hhhhhhhhhhhhhh......hhhhhhhhhhhhh.............hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..........hhhh............hhhhhhhhhhhhh......hhhhhhhhhhhhh.............eeee...eee....hhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TERPENE_SYNTHAS------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3sqc B 10 AYARTLDRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPELYETDVPPRRRGAKGGGGWIFDALDRALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIALKILDMTQHPAFIKGWEGLELYGVELDYGGWMFQASISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFCDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYKQAI 628
19 29 39 49 59 69 79 89 99 109 119 129 139 149 159 169 179 189 199 209 219 229 239 249 259 269 279 289 299 309 319 329 339 349 359 369 379 389 399 409 419 429 439 449 459 469 479 489 499 509 519 529 539 549 559 569 579 589 599 609 619
Chain C from PDB Type:PROTEIN Length:619
aligned with SQHC_ALIAD | P33247 from UniProtKB/Swiss-Prot Length:631
Alignment length:619
19 29 39 49 59 69 79 89 99 109 119 129 139 149 159 169 179 189 199 209 219 229 239 249 259 269 279 289 299 309 319 329 339 349 359 369 379 389 399 409 419 429 439 449 459 469 479 489 499 509 519 529 539 549 559 569 579 589 599 609 619
SQHC_ALIAD 10 AYARTLDRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPELYETDVPPRRRGAKGGGGWIFDALDRALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIALKILDMTQHPAFIKGWEGLELYGVELDYGGWMFQASISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVDDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFCDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYKQAI 628
SCOP domains d3sqcc1 C:10-36,C:308-628 d3sqcc2 C:37-307 Squalene-hopene cyclase d3sqcc1 C:10-36,C:308-628 Squalene-hopene cyclase SCOP domains
CATH domains 3sqcC01 C:10-35,C:308-628 3sqcC02 C:36-307 [code=1.50.10.20, no name defined] 3sqcC01 C:10-35,C:308-628 [code=1.50.10.20, no name defined] CATH domains
Pfam domains (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Prenyltrans_2-3sqcC10 C:245-419 ----------------------------------------------------------------------------------------------Prenyltrans-3sqcC01 C:514-565 --------------------------------------------------------------- Pfam domains (1)
Pfam domains (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Prenyltrans_2-3sqcC11 C:245-419 ----------------------------------------------------------------------------------------------Prenyltrans-3sqcC02 C:514-565 --------------------------------------------------------------- Pfam domains (2)
Pfam domains (3) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Prenyltrans_2-3sqcC12 C:245-419 ----------------------------------------------------------------------------------------------Prenyltrans-3sqcC03 C:514-565 --------------------------------------------------------------- Pfam domains (3)
Pfam domains (4) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Prenyltrans-3sqcC04 C:514-565 --------------------------------------------------------------- Pfam domains (4)
Pfam domains (5) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Prenyltrans-3sqcC05 C:514-565 --------------------------------------------------------------- Pfam domains (5)
Pfam domains (6) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Prenyltrans-3sqcC06 C:514-565 --------------------------------------------------------------- Pfam domains (6)
Pfam domains (7) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Prenyltrans-3sqcC07 C:514-565 --------------------------------------------------------------- Pfam domains (7)
Pfam domains (8) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Prenyltrans-3sqcC08 C:514-565 --------------------------------------------------------------- Pfam domains (8)
Pfam domains (9) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Prenyltrans-3sqcC09 C:514-565 --------------------------------------------------------------- Pfam domains (9)
Sec.struct. author .hhhhhhhhhhhhhhh...............hhhhhhhhhhhh.....hhhhhhhhhhhhhh................hhhhhhhhhhhhhh......hhhhhhhhhhhhh.hhhh..hhhhhhhhh.....hhh.....hhhhh........hhh..hhhhhhhhhhhhhhhh.......hhh..hhh.................hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh..........hhhhhhhhhhhhh......hhhhhhhhhhhh.eee.....eee.....hhhhhhhhhhhhhhh......hhhhhhhhhhhhh......hhhh.....................hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.................hhhh..............hhhhhhhhhhhhhh......hhhhhhhhhhhhh.............hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..........hhhh..hhh.......hhhhhhhhhhhhh......hhhhhhhhhhhhh.............eeee...eee....hhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TERPENE_SYNTHAS------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3sqc C 10 AYARTLDRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPELYETDVPPRRRGAKGGGGWIFDALDRALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIALKILDMTQHPAFIKGWEGLELYGVELDYGGWMFQASISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFCDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYKQAI 628
19 29 39 49 59 69 79 89 99 109 119 129 139 149 159 169 179 189 199 209 219 229 239 249 259 269 279 289 299 309 319 329 339 349 359 369 379 389 399 409 419 429 439 449 459 469 479 489 499 509 519 529 539 549 559 569 579 589 599 609 619
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |