3SNV - JenaLib

Title :   CRYSTAL STRUCTURE OF SYMFOIL-4T PERMUTATION #1: DE NOVO DESIGNED BETA-TREFOIL ARCHITECTURE WITH SYMMETRIC PRIMARY STRUCTURE

Authors :   M. Blaber, L. Longo, J. Lee

Date :   29 Jun 11 (Deposition) - 04 Jul 12 (Release) - 04 Jul 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Beta-Trefoil, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Longo, J. Lee, M. Blaber
Folding Pathway Redundancy In Symmetric Protein Architectur
To Be Published
PubMed: search

Compounds

Molecule 1 - SYMFOIL-4T/PERMUTATION #1 SYNTHETIC PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 10)

Asymmetric Unit (2, 10)

No.	Name	Count	Type	Full Name
1	SO4	8	Ligand/Ion	SULFATE ION
2	TRS	2	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Biological Unit 1 (2, 5)

No.	Name	Count	Type	Full Name
1	SO4	4	Ligand/Ion	SULFATE ION
2	TRS	1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Biological Unit 2 (2, 5)

No.	Name	Count	Type	Full Name
1	SO4	4	Ligand/Ion	SULFATE ION
2	TRS	1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Sites (10, 10)

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	THR A:30 , VAL A:31 , THR A:72 , VAL A:73 , THR A:116 , VAL A:117 , GLU A:137 , HOH A:354 , HOH A:359	BINDING SITE FOR RESIDUE TRS A 301
02	AC2	SOFTWARE	ARG A:66 , THR A:76	BINDING SITE FOR RESIDUE SO4 A 302
03	AC3	SOFTWARE	ARG A:24 , THR A:34 , HOH A:362	BINDING SITE FOR RESIDUE SO4 A 305
04	AC4	SOFTWARE	ARG A:110 , THR A:123 , ASP A:124 , HOH A:370	BINDING SITE FOR RESIDUE SO4 A 306
05	AC5	SOFTWARE	ARG A:123A , HOH A:355 , HOH A:370 , HOH B:367	BINDING SITE FOR RESIDUE SO4 A 308
06	AC6	SOFTWARE	THR B:30 , VAL B:31 , THR B:72 , VAL B:73 , THR B:116 , VAL B:117 , GLU B:137 , HOH B:346 , HOH B:365	BINDING SITE FOR RESIDUE TRS B 300
07	AC7	SOFTWARE	ARG B:66 , THR B:76 , HOH B:340	BINDING SITE FOR RESIDUE SO4 B 303
08	AC8	SOFTWARE	ARG B:110 , THR B:123	BINDING SITE FOR RESIDUE SO4 B 304
09	AC9	SOFTWARE	ARG B:123A , HOH B:368	BINDING SITE FOR RESIDUE SO4 B 307
10	BC1	SOFTWARE	ARG B:24 , THR B:34	BINDING SITE FOR RESIDUE SO4 B 309

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:125
                                                                                                                                                              
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.....eeee........eeeeeeee..eeeeee....eeeee.....eeee........eeeeee....eeeeee.....eeee.....eeee.........eeeee.....eeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                3snv A   20 GQYLRINPDGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTE  218
                                    29        39        49        59        69       |78        88        98    || 111      123A       133      |213     
                                                                                   76A                        103|         119||              140|       
                                                                                                               107          123|               211       
                                                                                                                            123A

Chain B from PDB  Type:PROTEIN  Length:124
                                                                                                                                                             
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.....eeee.........eeeee.....eeeee....eeeee.....eeee....hhh.eeeeee.....eeeee.....eeee.....eeee........eeeeee.....eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                3snv B   20 GQYLRINPDGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQFQISPEGNGEVLLKST  217
                                    29        39        49        59        69       |78        88        98    || 111      123A       133      |213    
                                                                                   76A                        103|         119||              140|      
                                                                                                               107          123|               211      
                                                                                                                            123A

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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	Ligands, Modified Residues, Ions
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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	Sites
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		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
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		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3snv)

Biological Units
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		Biological Unit 2	[ Jena3D ]

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