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(-) Description

Title :  PRE-CLEAVAGE STRUCTURE OF THE AUTOTRANSPORTER ESPP - N1023A MUTANT
 
Authors :  T. B. Barnard, N. Noinaj, N. C. Easley, A. J. Kuszak, S. K. Buchanan
Date :  24 Jun 11  (Deposition) - 16 Nov 11  (Release) - 18 Jan 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.48
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta Barrel, Membrane Protein, Asparagine Cyclization, Autocleavage, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. J. Barnard, J. Gumbart, J. H. Peterson, N. Noinaj, N. C. Easley, N. Dautin, A. J. Kuszak, E. Tajkhorshid, H. D. Bernstein, S. K. Buchana
Molecular Basis For The Activation Of A Catalytic Asparagin Residue In A Self-Cleaving Bacterial Autotransporter.
J. Mol. Biol. V. 415 128 2012
PubMed-ID: 22094314  |  Reference-DOI: 10.1016/J.JMB.2011.10.049

(-) Compounds

Molecule 1 - SERINE PROTEASE ESPP
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPTRC99A
    Expression System StrainT7 EXPRESS
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentAUTOTRANSPORTER PROTEIN ESPP TRANSLOCATOR (UNP RESIDUES 999-1300)
    GeneECO57PM78, ESPP, L7020
    MutationYES
    Organism ScientificESCHERICHIA COLI
    Organism Taxid83334

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 9)

Asymmetric/Biological Unit (1, 9)
No.NameCountTypeFull Name
1C8E9Ligand/Ion(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:1170 , THR A:1206 , TYR A:1229 , SER A:1256 , MET A:1258 , PHE A:1283BINDING SITE FOR RESIDUE C8E A 1301
2AC2SOFTWAREASP A:1068 , THR A:1080 , PHE A:1082 , LEU A:1107 , TYR A:1108 , ALA A:1109 , ILE A:1122BINDING SITE FOR RESIDUE C8E A 1302
3AC3SOFTWAREALA A:1165 , ILE A:1167BINDING SITE FOR RESIDUE C8E A 1303
4AC4SOFTWAREILE A:1045 , ASN A:1059 , THR A:1061 , TRP A:1149BINDING SITE FOR RESIDUE C8E A 1304
5AC5SOFTWAREPHE A:1113 , SER A:1115 , ILE A:1119 , PHE A:1214 , ALA A:1223BINDING SITE FOR RESIDUE C8E A 1305
6AC6SOFTWAREPHE A:1231 , LEU A:1233BINDING SITE FOR RESIDUE C8E A 1306
7AC7SOFTWAREILE A:1268 , ARG A:1269 , ASP A:1270 , ASN A:1271 , VAL A:1272BINDING SITE FOR RESIDUE C8E A 1307

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3SLJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3SLJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3SLJ)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1AUTOTRANSPORTERPS51208 Autotransporter beta-domain profile.ESPP_ECO571034-1300  1A:1034-1300

(-) Exons   (0, 0)

(no "Exon" information available for 3SLJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:305
 aligned with ESPP_ECO57 | Q7BSW5 from UniProtKB/Swiss-Prot  Length:1300

    Alignment length:305
                                  1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175      1185      1195      1205      1215      1225      1235      1245      1255      1265      1275      1285      1295     
          ESPP_ECO57    996 NTVANKEATRNAAALFSVDYKAFLNEVNNLNKRMGDLRDINGEAGAWARIMSGTGSASGGFSDNYTHVQVGVDKKHELDGLDLFTGFTVTHTDSSASADVFSGKTKSVGAGLYASAMFDSGAYIDLIGKYVHHDNEYTATFAGLGTRDYSTHSWYAGAEAGYRYHVTEDAWIEPQAELVYGSVSGKQFAWKDQGMHLSMKDKDYNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLLANGETVLRDASGEKRIKGEKDSRMLMSVGLNAEIRDNVRFGLEFEKSAFGKYNVDNAVNANFRYSF 1300
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh........eeeeeeeeeeeeee...eeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeee...eeeeeeeeeeeeeeeeee...eeeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeeeeee.ee....eeeeeeeeeeee.....eeeeee..eeeeeee.....eeeeeeeeeeeeeee..eeeeeeeeeeeeee.....eeeeee..eeeeee....eeeeeeeeeeeee...eeeeeeeeeee...eeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------AUTOTRANSPORTER  PDB: A:1034-1300 UniProt: 1034-1300                                                                                                                                                                                                                        PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3slj A  996 HHHANKEATRNAAALFSVDYKAFLNEVANLNKRMGDLRDINGEAGAWARIMSGTGSASGGFSDNYTHVQVGVDKKHELDGLDLFTGFTVTHTDSSASADVFSGKTKSVGAGLYASAMFDSGAYIDLIGKYVHHDNEYTATFAGLGTRDYSTHSWYAGAEAGYRYHVTEDAWIEPQAELVYGSVSGKQFAWKDQGMHLSMKDKDYNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLLANGETVLRDASGEKRIKGEKDSRMLMSVGLNAEIRDNVRFGLEFEKSAFGKYNVDNAVNANFRYSF 1300
                                  1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175      1185      1195      1205      1215      1225      1235      1245      1255      1265      1275      1285      1295     

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3SLJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3SLJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3SLJ)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (ESPP_ECO57 | Q7BSW5)
molecular function
    GO:0004175    endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019867    outer membrane    The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ESPP_ECO57 | Q7BSW52qom 3slo 3slt 3sze

(-) Related Entries Specified in the PDB File

3slo PRE-CLEAVAGE STRUCTURE OF THE AUTOTRANSPORTER ESPP - N1023D MUTANT
3slt PRE-CLEAVAGE STRUCTURE OF THE AUTOTRANSPORTER ESPP - N1023S MUTANT