3SHG - JenaLib

Title :   VBHT FIC PROTEIN FROM BARTONELLA SCHOENBUCHENSIS IN COMPLEX WITH VBHA ANTITOXIN

Authors :   A. Goepfert, T. Schirmer

Date :   16 Jun 11 (Deposition) - 25 Jan 12 (Release) - 15 Feb 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.50

Chains :   Asym./Biol. Unit : A,B

Keywords :   Ampylation, Adenylylation, Toxin-Antitoxin Complex, Fic Fold, Amp Transfer, Transferase-Protein Binding Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Engel, A. Goepfert, F. V. Stanger, A. Harms, A. Schmidt, T. Schirmer C. Dehio
Adenylylation Control By Intra- Or Intermolecular Active-Site Obstruction In Fic Proteins.
Nature V. 482 107 2012
PubMed-ID: 22266942 | Reference-DOI: 10.1038/NATURE10729

Compounds

Molecule 1 - VBHT
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PRSFDUET1
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	B11C_100026
	Organism Scientific	:	BARTONELLA SCHOENBUCHENSIS R1
	Organism Taxid	:	687861

Molecule 2 - VBHA
	Chains	:	B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PRSFDUET1
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	B11C_100027
	Organism Scientific	:	BARTONELLA SCHOENBUCHENSIS R1
	Organism Taxid	:	687861

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	VAL A:1 , LYS A:85 , HIS A:136 , GLU A:140 , GLY A:141 , ASN A:142 , GLY A:143 , ARG A:144 , HOH A:615 , HOH A:622 , GLU B:24	BINDING SITE FOR RESIDUE TLA A 400
2	AC2	SOFTWARE	LYS A:3 , TYR A:4 , GLU A:5 , ASP A:82 , ILE A:83 , VAL A:84 , LYS A:89 , HOH A:501 , HOH A:611 , HOH A:639	BINDING SITE FOR RESIDUE TLA A 401

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Asymmetric/Biological Unit (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FIDO	PS51459	Fido domain profile.	VBHT_BARSR	55-200	1	A:55-198

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:198
 aligned with VBHT_BARSR | E6Z0R3 from UniProtKB/Swiss-Prot  Length:478

    Alignment length:198
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190        
           VBHT_BARSR     1 MRKYEGSNDPYTDPETGVMYNLLGIKDQARLERVESAFAYIRSFELGRTSISGKFDLDHMKKIHKKLFGDVYEWAGKTRLVDIVKDNSKFAHYTQIESYAPQITQQLAREQHLRGLDANEFSQRAGYYMGELNALHPFREGNGRTLREFIWQLAREAGYHIDWDRVERQEMTRASIESYYGNSDLMSALIRRNLTEFT 198
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhh.................hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh..............ee..ee..hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.eee.....hhhhhhhhhhhhhh..hhhhhhhhhhheee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------FIDO  PDB: A:55-198 UniProt: 55-200                                                                                                              PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3shg A   1 VRKYEGSNDPYTDPETGVMYNLLGIKDQARLERVESAFAYIRSFELGRTSISGKFDLDHMKKIHKKLFGDVYEWAGKTRLVDIVKDNSKFAHYTQIESYAPQITQQLAREQHLRGLDANEFSQRAGYYMGELNALHPFREGNGRTLREFIWQLAREAGYHIDWDRVERQEMTRASIESYYGNSDLMSALIRRNLTEFT 198
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190

Chain B from PDB  Type:PROTEIN  Length:61
 aligned with VBHA_BARSR | E6Z0R4 from UniProtKB/Swiss-Prot  Length:62

    Alignment length:61
                                    10        20        30        40        50        60 
           VBHA_BARSR     1 MLSEEEIEYRRRDARNALASQRLEGLEPDPQVVAQMERVVVGELETSDVIKDLMERIKREE  61
               SCOP domains ------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh...hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------- Transcript
                 3shg B   1 VLSEEEIEYRRRDARNALASQRLEGLEPDPQVVAQMERVVVGELETSDVIKDLMERIKREE  61
                                    10        20        30        40        50        60

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (11, 14)

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Description