3SGH - JenaLib

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Title :   CRYSTAL STRUCTURE OF A SUSD-LIKE PROTEIN (BT_3752) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.70 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   14 Jun 11 (Deposition) - 06 Jul 11 (Release) - 24 Dec 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Alpha-Alpha Superhelix, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Susd-Like Protein (Bt_3752) From Bacteroides Thetaiotaomicron Vpi-5482 At 1. 7 A Resolution
To Be Published
PubMed: search

Molecule 1 - SUSD HOMOLOG
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	SPEEDET
	Expression System Strain	:	HK100
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	SEQUENCE DATABASE RESIDUES 24-521
	Gene	:	BT_3752
	Organism Scientific	:	BACTEROIDES THETAIOTAOMICRON
	Organism Taxid	:	818

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 50)

No.	Name	Count	Type	Full Name
1	CL	20	Ligand/Ion	CHLORIDE ION
2	MSE	30	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 15)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MSE	15	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 15)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MSE	15	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (20, 20)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:121 , HOH A:1045 , HOH A:1125	BINDING SITE FOR RESIDUE CL A 601
02	AC2	SOFTWARE	GLU A:225 , PRO A:226 , GLU A:227 , TYR A:228	BINDING SITE FOR RESIDUE CL A 603
03	AC3	SOFTWARE	ASN A:467 , ARG A:480 , ASN A:507 , HOH A:1564	BINDING SITE FOR RESIDUE CL A 606
04	AC4	SOFTWARE	ARG A:483 , HOH A:1402 , ALA B:76 , ASN B:77 , TRP B:78 , PRO B:317	BINDING SITE FOR RESIDUE CL A 608
05	AC5	SOFTWARE	ASN A:77 , TRP A:78 , PRO A:317 , HOH A:814 , ARG B:483 , HOH B:1672	BINDING SITE FOR RESIDUE CL A 609
06	AC6	SOFTWARE	GLN A:190 , THR A:410 , HOH A:1236 , HOH A:1709	BINDING SITE FOR RESIDUE CL A 614
07	AC7	SOFTWARE	GLN A:55 , ASN A:56 , TRP A:268 , SER B:484 , ASN B:488 , HOH B:1169 , HOH B:1360	BINDING SITE FOR RESIDUE CL A 615
08	AC8	SOFTWARE	GLY A:153	BINDING SITE FOR RESIDUE CL A 618
09	AC9	SOFTWARE	LYS A:332	BINDING SITE FOR RESIDUE CL A 619
10	BC1	SOFTWARE	GLY B:121	BINDING SITE FOR RESIDUE CL B 600
11	BC2	SOFTWARE	GLU B:225 , GLU B:227 , TYR B:228	BINDING SITE FOR RESIDUE CL B 602
12	BC3	SOFTWARE	LYS B:151 , LYS B:332	BINDING SITE FOR RESIDUE CL B 604
13	BC4	SOFTWARE	ASN B:467 , ARG B:480 , ASN B:507 , HOH B:1890	BINDING SITE FOR RESIDUE CL B 605
14	BC5	SOFTWARE	ASN A:488 , GLN B:55 , ASN B:56 , TRP B:268 , HOH B:1244	BINDING SITE FOR RESIDUE CL B 607
15	BC6	SOFTWARE	ARG B:289 , HOH B:1674	BINDING SITE FOR RESIDUE CL B 610
16	BC7	SOFTWARE	THR B:410 , HOH B:1117 , HOH B:1267	BINDING SITE FOR RESIDUE CL B 611
17	BC8	SOFTWARE	ALA B:90 , ARG B:480 , ASN B:507 , HOH B:1890	BINDING SITE FOR RESIDUE CL B 612
18	BC9	SOFTWARE	ARG B:308 , HOH B:1077 , HOH B:1117 , HOH B:1634	BINDING SITE FOR RESIDUE CL B 613
19	CC1	SOFTWARE	GLN B:190 , ASN B:471 , THR B:472	BINDING SITE FOR RESIDUE CL B 616
20	CC2	SOFTWARE	GLU B:313 , ILE B:314	BINDING SITE FOR RESIDUE CL B 617

(no "SS Bond" information available for 3SGH)

Asymmetric Unit

No.	Residues
1	Tyr A:107	-	Pro A:108
2	Trp A:268	-	Pro A:269
3	Tyr A:441	-	Pro A:442
4	Tyr A:456	-	Pro A:457
5	Tyr B:107	-	Pro B:108
6	Trp B:268	-	Pro B:269
7	Tyr B:441	-	Pro B:442
8	Tyr B:456	-	Pro B:457

(no "SAP(SNP)/Variant" information available for 3SGH)

(no "PROSITE Motif" information available for 3SGH)

(no "Exon" information available for 3SGH)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:484
 aligned with Q8A1B4_BACTN | Q8A1B4 from UniProtKB/TrEMBL  Length:521

    Alignment length:484
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517    
         Q8A1B4_BACTN    38 PASNLLSTMFNVYACPQQNACQEINCMWASFSGQVTATANWSFGKNIFAYYNASEGHNDSSWGRLYGYIYPSFFLVENSTEKKGVIYAMAQLTRVYGMQLLASLQGPIPYTQMKAGETEAPYDNEQTVWHAMFDDLDNAITILKSAATFGVNQDLAVVDQFYKGDCSKWLKFANTLKLRMAIRISGVEPEYAQTKAQEAVLGGVMESVGDSSYDTTNGGINENGYAIVSGWPEVRANACLVSYMNGYNDPRRPAYFTPQTQTAAGGYVGVRSGSAEIPEPTVYANYSKLFIATDKTLPQPVMYAAEAAFLRAEGALKGWNMGGDAKTFYEKGVRLSFEEFGVSGADDYLADATSIPGNYVDNLIAGHTGNNYTNQSSITIKWEDGADDAKKLERVLTQKWIACYPDPMNGWADFRRTGYPRIFPATESMNADCNTGRGQRRLRFTRSEYNNNKANVEAAVSMLSNGKDSNGTDLWWAMKENGTY 521
               SCOP domains d3sgha_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.eee.........hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh.......hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...hhhhheee........hhhhhhhhh..eeehhhhhhhhhhh...hhhhhh................................hhhhhh....eeeehhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh...hhhhhhh................hhhhh...............hhhhhhhhhhhhhhhhh....hhhhhhhhhhh..........................hhhhhhhhhhhhhhhhhhh..................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sgh A  38 PASNLLSTmFNVYACPQQNACQEINCmWASFSGQVTATANWSFGKNIFAYYNASEGHNDSSWGRLYGYIYPSFFLVENSTEKKGVIYAmAQLTRVYGmQLLASLQGPIPYTQmKAGETEAPYDNEQTVWHAmFDDLDNAITILKSAATFGVNQDLAVVDQFYKGDCSKWLKFANTLKLRmAIRISGVEPEYAQTKAQEAVLGGVmESVGDSSYDTTNGGINENGYAIVSGWPEVRANACLVSYmNGYNDPRRPAYFTPQTQTAAGGYVGVRSGSAEIPEPTVYANYSKLFIATDKTLPQPVmYAAEAAFLRAEGALKGWNmGGDAKTFYEKGVRLSFEEFGVSGADDYLADATSIPGNYVDNLIAGHTGNNYTNQSSITIKWEDGADDAKKLERVLTQKWIACYPDPmNGWADFRRTGYPRIFPATESmNADCNTGRGQRRLRFTRSEYNNNKANVEAAVSmLSNGKDSNGTDLWWAmKENGTY 521
                                    47        57      | 67        77        87        97       107       117       127       137       147  |    157       167 |     177       187       197       207       217       227       237    |  247       257       267       277   |   287       297       307       317       327       337 |     347       357|      367       377       387       397       407       417       427       437       447       457       467       477       487       497 |     507       517    
                                   46-MSE            64-MSE                                                       126-MSE  135-MSE        150-MSE            169-MSE                                         217-MSE                  242-MSE                                281-MSE                                                   339-MSE            358-MSE                                                                                445-MSE              466-MSE                          499-MSE         515-MSE

Chain B from PDB  Type:PROTEIN  Length:484
 aligned with Q8A1B4_BACTN | Q8A1B4 from UniProtKB/TrEMBL  Length:521

    Alignment length:484
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517    
         Q8A1B4_BACTN    38 PASNLLSTMFNVYACPQQNACQEINCMWASFSGQVTATANWSFGKNIFAYYNASEGHNDSSWGRLYGYIYPSFFLVENSTEKKGVIYAMAQLTRVYGMQLLASLQGPIPYTQMKAGETEAPYDNEQTVWHAMFDDLDNAITILKSAATFGVNQDLAVVDQFYKGDCSKWLKFANTLKLRMAIRISGVEPEYAQTKAQEAVLGGVMESVGDSSYDTTNGGINENGYAIVSGWPEVRANACLVSYMNGYNDPRRPAYFTPQTQTAAGGYVGVRSGSAEIPEPTVYANYSKLFIATDKTLPQPVMYAAEAAFLRAEGALKGWNMGGDAKTFYEKGVRLSFEEFGVSGADDYLADATSIPGNYVDNLIAGHTGNNYTNQSSITIKWEDGADDAKKLERVLTQKWIACYPDPMNGWADFRRTGYPRIFPATESMNADCNTGRGQRRLRFTRSEYNNNKANVEAAVSMLSNGKDSNGTDLWWAMKENGTY 521
               SCOP domains d3sghb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) SusD-like-3sghB01 B:38-516                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ----- Pfam domains (1)
           Pfam domains (2) SusD-like-3sghB02 B:38-516                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ----- Pfam domains (2)
         Sec.struct. author hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.eee.........hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...hhhhheee........hhhhhhhhh..eeehhhhhhhhhhh...hhhhhh................................hhhhhh....eeeehhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh...hhhhhhh................hhhhh...............hhhhhhhhhhhhhhhhh....hhhhhhhhhhh..........................hhhhhhhhhhhhhhhhhhh..................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sgh B  38 PASNLLSTmFNVYACPQQNACQEINCmWASFSGQVTATANWSFGKNIFAYYNASEGHNDSSWGRLYGYIYPSFFLVENSTEKKGVIYAmAQLTRVYGmQLLASLQGPIPYTQmKAGETEAPYDNEQTVWHAmFDDLDNAITILKSAATFGVNQDLAVVDQFYKGDCSKWLKFANTLKLRmAIRISGVEPEYAQTKAQEAVLGGVmESVGDSSYDTTNGGINENGYAIVSGWPEVRANACLVSYmNGYNDPRRPAYFTPQTQTAAGGYVGVRSGSAEIPEPTVYANYSKLFIATDKTLPQPVmYAAEAAFLRAEGALKGWNmGGDAKTFYEKGVRLSFEEFGVSGADDYLADATSIPGNYVDNLIAGHTGNNYTNQSSITIKWEDGADDAKKLERVLTQKWIACYPDPmNGWADFRRTGYPRIFPATESmNADCNTGRGQRRLRFTRSEYNNNKANVEAAVSmLSNGKDSNGTDLWWAmKENGTY 521
                                    47        57      | 67        77        87        97       107       117       127       137       147  |    157       167 |     177       187       197       207       217       227       237    |  247       257       267       277   |   287       297       307       317       327       337 |     347       357|      367       377       387       397       407       417       427       437       447       457       467       477       487       497 |     507       517    
                                   46-MSE            64-MSE                                                       126-MSE  135-MSE        150-MSE            169-MSE                                         217-MSE                  242-MSE                                281-MSE                                                   339-MSE            358-MSE                                                                                445-MSE              466-MSE                          499-MSE         515-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: alpha-alpha superhelix (690)

Superfamily: TPR-like (83)

Family: automated matches (13)

Protein domain: automated matches (13)

Bacteroides thetaiotaomicron [TaxId: 818] (3)

1a	d3sgha_	A:
1b	d3sghb_	B:

(no "CATH Domain" information available for 3SGH)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: TPR (230)

Family: SusD-like (2)

Bacteroides thetaiotaomicron (1)

1a	SusD-like-3sghB01	B:38-516
1b	SusD-like-3sghB02	B:38-516

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 3SGH)

Asymmetric Unit
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	Cis Peptide Bonds
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		Trp B:268 - Pro B:269	[ RasMol ]
		Tyr A:107 - Pro A:108	[ RasMol ]
		Tyr A:441 - Pro A:442	[ RasMol ]
		Tyr A:456 - Pro A:457	[ RasMol ]
		Tyr B:107 - Pro B:108	[ RasMol ]
		Tyr B:441 - Pro B:442	[ RasMol ]
		Tyr B:456 - Pro B:457	[ RasMol ]

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