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(-) Description

Title :  1.7 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF PUTATIVE PHOSPHATASE FROM CLOSTRIDIUM DIFFICILE
 
Authors :  G. Minasov, L. Shuvalova, I. Dubrovska, J. Winsor, L. Papazisi, W. F. An Center For Structural Genomics Of Infectious Diseases (Csgi
Date :  08 Jun 11  (Deposition) - 29 Jun 11  (Release) - 29 Jun 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Haloacid Dehalogenase-Like Hydrolase, Hydrolase, Center For Structural Genomics Of Infectious Diseases, Csgid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Minasov, L. Shuvalova, I. Dubrovska, J. Winsor, L. Papazisi, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
1. 7 Angstrom Resolution Crystal Structure Of Putative Phosphatase From Clostridium Difficile.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE PHOSPHATASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: CD3605
    Organism Scientific: CLOSTRIDIUM DIFFICILE
    Organism Taxid: 272563
    Strain: 630

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL
3NA1Ligand/IonSODIUM ION
4PGE1Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:13 , ASP A:168 , HOH A:340 , HOH A:341 , HOH A:343BINDING SITE FOR RESIDUE NA A 217
2AC2SOFTWAREASN A:145 , LYS A:178 , HOH A:260BINDING SITE FOR RESIDUE CL A 218
3AC3SOFTWARETYR A:99 , LYS A:100 , ASP A:126 , ARG A:127 , PHE A:129 , LYS A:130 , HOH A:232 , HOH A:282BINDING SITE FOR RESIDUE PGE A 219
4AC4SOFTWAREASP A:18 , LYS A:20 , TYR A:88 , TYR A:188 , GLY A:189 , TYR A:190BINDING SITE FOR RESIDUE GOL A 220
5AC5SOFTWAREASN A:4 , ASN A:101 , THR A:113 , ALA A:133 , GLY A:134BINDING SITE FOR RESIDUE GOL A 221

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3SD7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3SD7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3SD7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3SD7)

(-) Exons   (0, 0)

(no "Exon" information available for 3SD7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:215
 aligned with Q181K6_PEPD6 | Q181K6 from UniProtKB/TrEMBL  Length:216

    Alignment length:215
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211     
         Q181K6_PEPD6     2 KKNYEIVLFDLDGTLTDPKEGITKSIQYSLNSFGIKEDLENLDQFIGPPLHDTFKEYYKFEDKKAKEAVEKYREYFADKGIFENKIYENMKEILEMLYKNGKILLVATSKPTVFAETILRYFDIDRYFKYIAGSNLDGTRVNKNEVIQYVLDLCNVKDKDKVIMVGDRKYDIIGAKKIGIDSIGVLYGYGSFEEISESEPTYIVENVESIKDILL 216
               SCOP domains d3sd7a_ A: automated matches                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee......eehhhhhhhhhhhhhhhh....hhhhhhhhh..hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.ee..hhhhhhhhhhhh..eeeeeeeeehhhhhhhhhhh.hhhhh.eeeee.......hhhhhhhhhhhhh...hhh.eeeee.hhhhhhhhhhhh.eeeee.....hhhhhhhhh..eee....hhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sd7 A   2 KKNYEIVLFDLDGTLTDPKEGITKSIQYSLNSFGIKEDLENLDQFIGPPLHDTFKEYYKFEDKKAKEAVEKYREYFADKGIFENKIYENMKEILEMLYKNGKILLVATSKPTVFAETILRYFDIDRYFKYIAGSNLDGTRVNKNEVIQYVLDLCNVKDKDKVIMVGDRKYDIIGAKKIGIDSIGVLYGYGSFEEISESEPTYIVENVESIKDILL 216
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3SD7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3SD7)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q181K6_PEPD6 | Q181K6)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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