3S9Y - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF P. FALCIPARUM OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE COMPLEXED WITH 5-FLUORO-6-AMINO-UMP IN SPACE GROUP P21, PRODUCED FROM 5-FLUORO-6-AZIDO-UMP

Authors :   Y. Liu, L. P. Kotra, E. F. Pai

Date :   02 Jun 11 (Deposition) - 18 Apr 12 (Release) - 18 Apr 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   P. Falciparum, Orotidine 5'-Monophosphate Decarboxylase, 5-Fluoro-6- Amino-Ump, 5-Fluoro-6-Azido-Ump, Decarboxylase, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. M. Bello, D. Konforte, E. Poduch, C. Furlonger, L. Wei, Y. Liu, M. Lewis, E. F. Pai, C. J. Paige, L. P. Kotra
Structure-Activity Relationships Of Orotidine-5'-Monophosphate Decarboxylase Inhibitors As Anticancer Agents.
J. Med. Chem. V. 52 1648 2009
PubMed-ID: 19260677 | Reference-DOI: 10.1021/JM801224T

Molecule 1 - OROTIDINE 5'-PHOSPHATE DECARBOXYLASE
	Chains	:	A, B, C, D
	EC Number	:	4.1.1.23
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A-LIC
	Expression System Strain	:	BL21-RIL(DE23)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	GI\|9310996, PF10_0225
	Organism Scientific	:	PLASMODIUM FALCIPARUM
	Organism Taxid	:	36329
	Strain	:	3D7

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 9)

No.	Name	Count	Type	Full Name
1	FNU	4	Ligand/Ion	6-AMINO-5-FLUOROURIDINE 5'-(DIHYDROGEN PHOSPHATE)
2	P6G	2	Ligand/Ion	HEXAETHYLENE GLYCOL
3	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
4	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL
5	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 1 (5, 6)

No.	Name	Count	Type	Full Name
1	FNU	2	Ligand/Ion	6-AMINO-5-FLUOROURIDINE 5'-(DIHYDROGEN PHOSPHATE)
2	P6G	1	Ligand/Ion	HEXAETHYLENE GLYCOL
3	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
4	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL
5	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 3)

No.	Name	Count	Type	Full Name
1	FNU	2	Ligand/Ion	6-AMINO-5-FLUOROURIDINE 5'-(DIHYDROGEN PHOSPHATE)
2	P6G	1	Ligand/Ion	HEXAETHYLENE GLYCOL
3	PEG	-1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
4	PGE	-1	Ligand/Ion	TRIETHYLENE GLYCOL
5	SO4	-1	Ligand/Ion	SULFATE ION

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:23 , LYS A:102 , ASN A:104 , ASP A:136 , LYS A:138 , LEU A:191 , THR A:194 , THR A:195 , VAL A:240 , PRO A:264 , GLN A:269 , GLY A:293 , ARG A:294 , HOH A:329 , HOH A:330 , HOH A:334 , HOH A:338 , HOH A:339 , HOH A:378 , ASP B:141 , ILE B:142 , THR B:145	BINDING SITE FOR RESIDUE FNU A 324
2	AC2	SOFTWARE	ASP A:141 , ILE A:142 , THR A:145 , ASP B:23 , LYS B:102 , ASN B:104 , ASP B:136 , LYS B:138 , LEU B:191 , THR B:194 , THR B:195 , VAL B:240 , PRO B:264 , GLN B:269 , GLY B:293 , ARG B:294 , HOH B:326 , HOH B:341 , HOH B:349 , HOH B:353 , HOH B:355 , HOH B:385	BINDING SITE FOR RESIDUE FNU B 324
3	AC3	SOFTWARE	LYS B:147 , ARG B:150 , ASP B:179 , GLU B:180 , GLU B:181 , HOH B:415 , HOH B:678 , HOH B:972	BINDING SITE FOR RESIDUE SO4 B 2000
4	AC4	SOFTWARE	ASN B:299 , TYR B:301 , ASN C:299 , TYR C:301 , ALA C:305 , MET C:308	BINDING SITE FOR RESIDUE PGE B 3000
5	AC5	SOFTWARE	ILE A:142 , GLY A:143 , ASN A:171 , HOH A:404 , THR B:195 , ASN B:196 , PRO B:197 , GLN B:269 , HOH B:467 , HOH B:468 , HOH B:605	BINDING SITE FOR RESIDUE PEG B 3001
6	AC6	SOFTWARE	TYR B:251 , TYR B:255 , HOH B:466 , HOH B:559 , HOH B:1094 , LYS C:174 , MET C:224 , TYR C:227 , HOH C:620 , HOH D:870	BINDING SITE FOR RESIDUE P6G B 3003
7	AC7	SOFTWARE	ASP C:23 , LYS C:102 , ASN C:104 , ASP C:136 , LYS C:138 , LEU C:191 , THR C:194 , THR C:195 , VAL C:240 , PRO C:264 , GLN C:269 , GLY C:293 , ARG C:294 , HOH C:325 , HOH C:327 , HOH C:335 , HOH C:346 , HOH C:352 , HOH C:353 , ASP D:141 , ILE D:142 , THR D:145	BINDING SITE FOR RESIDUE FNU C 324
8	AC8	SOFTWARE	ASN A:205 , LYS B:174 , MET B:224 , TYR B:227 , ASP C:209 , TYR C:251 , TYR C:255 , HOH C:386 , HOH C:416 , HOH C:657 , HOH C:714 , HOH C:767 , HOH C:1078	BINDING SITE FOR RESIDUE P6G C 3002
9	AC9	SOFTWARE	ASP C:141 , ILE C:142 , THR C:145 , ASP D:23 , LYS D:102 , ASN D:104 , ASP D:136 , LYS D:138 , LEU D:191 , THR D:194 , THR D:195 , VAL D:240 , PRO D:264 , GLN D:269 , GLY D:293 , ARG D:294 , HOH D:325 , HOH D:328 , HOH D:330 , HOH D:334 , HOH D:335 , HOH D:346	BINDING SITE FOR RESIDUE FNU D 324

(no "SS Bond" information available for 3S9Y)

(no "Cis Peptide Bond" information available for 3S9Y)

(no "SAP(SNP)/Variant" information available for 3S9Y)

(no "PROSITE Motif" information available for 3S9Y)

(no "Exon" information available for 3S9Y)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:331
 aligned with Q8IJH3_PLAF7 | Q8IJH3 from UniProtKB/TrEMBL  Length:323

    Alignment length:331
                                    1                                                                                                                                                                                                                                                                                                                                  
                                    |2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322 
         Q8IJH3_PLAF7     - --------MGFKVKLEKRRNAINTCLCIGLDPDEKDIENFMKNEKENNYNNIKKNLKEKYINNVSIKKDILLKAPDNIIREEKSEEFFYFFNHFCFYIINETNKYALTFKMNFAFYIPYGSVGIDVLKNVFDYLYELNIPTILDMKINDIGNTVKNYRKFIFEYLKSDSCTVNIYMGTNMLKDICYDEEKNKYYSAFVLVKTTNPDSAIFQKNLSLDNKQAYVIMAQEALNMSSYLNLEQNNEFIGFVVGANSYDEMNYIRTYFPNCYILSPGIGAQNGDLHKTLTNGYHKSYEKILINIGRAITKNPYPQKAAQMYYDQINAILKQNMES 323
               SCOP domains d3s9ya_ A: automated matches                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.eeeee.hhh...hhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhh.....eeee....hhhhhhhh.ee....ee.eeeeeee.....hhhhhh..ee..eehhhhhhhhhhhhhhhh.hhhhh..eeeee...hhhhhhhhhhhh....eee........hhhhhhhhhh..hhh.eeeeehhhhhh..hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s9y A  -7 SGLVPRGSMGFKVKLEKRRNAINTCLCIGLDPDEKDIENFMKNEKENNYNNIKKNLKEKYINNVSIKKDILLKAPDNIIREEKSEEFFYFFNHFCFYIINETNKYALTFKMNFAFYIPYGSVGIDVLKNVFDYLYELNIPTILDMKINDIGNTVKNYRKFIFEYLKSDSCTVNIYMGTNMLKDICYDEEKNKYYSAFVLVKTTNPDSAIFQKNLSLDNKQAYVIMAQEALNMSSYLNLEQNNEFIGFVVGANSYDEMNYIRTYFPNCYILSPGIGAQNGDLHKTLTNGYHKSYEKILINIGRAITKNPYPQKAAQMYYDQINAILKQNMES 323
                                     2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322

Chain B from PDB  Type:PROTEIN  Length:323
 aligned with Q8IJH3_PLAF7 | Q8IJH3 from UniProtKB/TrEMBL  Length:323

    Alignment length:323
                             1                                                                                                                                                                                                                                                                                                                                 
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319   
         Q8IJH3_PLAF7     - -MGFKVKLEKRRNAINTCLCIGLDPDEKDIENFMKNEKENNYNNIKKNLKEKYINNVSIKKDILLKAPDNIIREEKSEEFFYFFNHFCFYIINETNKYALTFKMNFAFYIPYGSVGIDVLKNVFDYLYELNIPTILDMKINDIGNTVKNYRKFIFEYLKSDSCTVNIYMGTNMLKDICYDEEKNKYYSAFVLVKTTNPDSAIFQKNLSLDNKQAYVIMAQEALNMSSYLNLEQNNEFIGFVVGANSYDEMNYIRTYFPNCYILSPGIGAQNGDLHKTLTNGYHKSYEKILINIGRAITKNPYPQKAAQMYYDQINAILKQNME 322
               SCOP domains d3s9yb_ B: automated matches                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.eeeee.hhh....hhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhh.....eeee.....hhhhhhh.ee....ee.eeeeeee.....hhhhhh..ee..eehhhhhhhhhhhhhhhh.hhhhh..eeeee...hhhhhhhhhhhh....eee........hhhhhhhhh...hhh.eeeeehhhhhh..hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s9y B   0 SMGFKVKLEKRRNAINTCLCIGLDPDEKDIENFMKNEKENNYNNIKKNLKEKYINNVSIKKDILLKAPDNIIREEKSEEFFYFFNHFCFYIINETNKYALTFKMNFAFYIPYGSVGIDVLKNVFDYLYELNIPTILDMKINDIGNTVKNYRKFIFEYLKSDSCTVNIYMGTNMLKDICYDEEKNKYYSAFVLVKTTNPDSAIFQKNLSLDNKQAYVIMAQEALNMSSYLNLEQNNEFIGFVVGANSYDEMNYIRTYFPNCYILSPGIGAQNGDLHKTLTNGYHKSYEKILINIGRAITKNPYPQKAAQMYYDQINAILKQNME 322
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319

Chain C from PDB  Type:PROTEIN  Length:321
 aligned with Q8IJH3_PLAF7 | Q8IJH3 from UniProtKB/TrEMBL  Length:323

    Alignment length:321
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 
         Q8IJH3_PLAF7     1 MGFKVKLEKRRNAINTCLCIGLDPDEKDIENFMKNEKENNYNNIKKNLKEKYINNVSIKKDILLKAPDNIIREEKSEEFFYFFNHFCFYIINETNKYALTFKMNFAFYIPYGSVGIDVLKNVFDYLYELNIPTILDMKINDIGNTVKNYRKFIFEYLKSDSCTVNIYMGTNMLKDICYDEEKNKYYSAFVLVKTTNPDSAIFQKNLSLDNKQAYVIMAQEALNMSSYLNLEQNNEFIGFVVGANSYDEMNYIRTYFPNCYILSPGIGAQNGDLHKTLTNGYHKSYEKILINIGRAITKNPYPQKAAQMYYDQINAILKQNM 321
               SCOP domains d3s9yc_ C: automated matches                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.eeeee.hhh...hhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhh.....eeee.....hhhhhhh.ee....ee.eeeeeee.....hhhhhh..ee..eehhhhhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhh....eee........hhhhhhhhhh..hhh.eeeeehhhhhh..hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s9y C   1 MGFKVKLEKRRNAINTCLCIGLDPDEKDIENFMKNEKENNYNNIKKNLKEKYINNVSIKKDILLKAPDNIIREEKSEEFFYFFNHFCFYIINETNKYALTFKMNFAFYIPYGSVGIDVLKNVFDYLYELNIPTILDMKINDIGNTVKNYRKFIFEYLKSDSCTVNIYMGTNMLKDICYDEEKNKYYSAFVLVKTTNPDSAIFQKNLSLDNKQAYVIMAQEALNMSSYLNLEQNNEFIGFVVGANSYDEMNYIRTYFPNCYILSPGIGAQNGDLHKTLTNGYHKSYEKILINIGRAITKNPYPQKAAQMYYDQINAILKQNM 321
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320

Chain D from PDB  Type:PROTEIN  Length:320
 aligned with Q8IJH3_PLAF7 | Q8IJH3 from UniProtKB/TrEMBL  Length:323

    Alignment length:320
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321
         Q8IJH3_PLAF7     2 GFKVKLEKRRNAINTCLCIGLDPDEKDIENFMKNEKENNYNNIKKNLKEKYINNVSIKKDILLKAPDNIIREEKSEEFFYFFNHFCFYIINETNKYALTFKMNFAFYIPYGSVGIDVLKNVFDYLYELNIPTILDMKINDIGNTVKNYRKFIFEYLKSDSCTVNIYMGTNMLKDICYDEEKNKYYSAFVLVKTTNPDSAIFQKNLSLDNKQAYVIMAQEALNMSSYLNLEQNNEFIGFVVGANSYDEMNYIRTYFPNCYILSPGIGAQNGDLHKTLTNGYHKSYEKILINIGRAITKNPYPQKAAQMYYDQINAILKQNM 321
               SCOP domains d3s9yd_ D: automated matches                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.hhh...hhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhh.....eeee....hhhhhhhh.ee....ee.eeeeeee.....hhhhhh..ee..eehhhhhhhhhhhhhhhh.hhhhh..eeeee...hhhhhhhhhhhh....eee........hhhhhhhhhh..hhh.eeeeehhhhhh..hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s9y D   2 GFKVKLEKRRNAINTCLCIGLDPDEKDIENFMKNEKENNYNNIKKNLKEKYINNVSIKKDILLKAPDNIIREEKSEEFFYFFNHFCFYIINETNKYALTFKMNFAFYIPYGSVGIDVLKNVFDYLYELNIPTILDMKINDIGNTVKNYRKFIFEYLKSDSCTVNIYMGTNMLKDICYDEEKNKYYSAFVLVKTTNPDSAIFQKNLSLDNKQAYVIMAQEALNMSSYLNLEQNNEFIGFVVGANSYDEMNYIRTYFPNCYILSPGIGAQNGDLHKTLTNGYHKSYEKILINIGRAITKNPYPQKAAQMYYDQINAILKQNM 321
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: Ribulose-phoshate binding barrel (356)

Family: Decarboxylase (172)

Protein domain: automated matches (117)

Plasmodium falciparum [TaxId: 36329] (5)

1a	d3s9ya_	A:
1b	d3s9yb_	B:
1c	d3s9yc_	C:
1d	d3s9yd_	D:

(no "CATH Domain" information available for 3S9Y)

(no "Pfam Domain" information available for 3S9Y)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (Q8IJH3_PLAF7 | Q8IJH3)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0004590	orotidine-5'-phosphate decarboxylase activity	Catalysis of the reaction: H(+) + orotidine 5'-phosphate = CO(2) + UMP.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0006221	pyrimidine nucleotide biosynthetic process	The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
		FNU	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3s9y)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
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Access by PDB/NDB ID
	3s9y
		Family and Domain Information	:	ProDom \| SYSTERS
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
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		Structural Genomics	:	GeneCensus
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Access by UniProt ID/Accession number
	Q8IJH3_PLAF7 \| Q8IJH3
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Access by Enzyme Classificator (EC Number)
	4.1.1.23
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		Domain Information	:	XDom
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Access by UniProt ID/Accession number
	Q8IJH3_PLAF7 \| Q8IJH3
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UniProtKB/TrEMBL
	Q8IJH3_PLAF7 \| Q8IJH3	:	2f84 2q8l 2q8z 2qaf 3bar 3bpw 3mwa 3n2m 3n34 3n3m

2q8l	APO STRUCTURE OF OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE FROM P. FALCIPARUM
2q8z	STRUCTURE OF P. FALCIPARUM OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE COMPLEXED WITH 6-AMINO-UMP
2qaf	CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM OROTIDINE 5'- MONOPHOSPHATE DECARBOXYLASE COVALENTLY MODIFIED BY 6-IODO- UMP
3bar	CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM OROTIDINE 5'- MONOPHOSPHATE DECARBOXYLASE COVALENTLY MODIFIED BY 6-AZIDO- UMP
3bpw	CRYSTAL STRUCTURE OF P. FALCIPARUM OROTIDINE 5'- MONOPHOSPHATE DECARBOXYLASE COMPLEXED WITH XMP
3mwa	CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM OROTIDINE 5'- MONOPHOSPHATE DECARBOXYLASE COVALENTLY MODIFIED BY 2-PRIME- FLUORO-6-IODO-UMP
3n34	CRYSTAL STRUCTURE OF P. FALCIPARUM OROTIDINE 5'- MONOPHOSPHATE DECARBOXYLASE COMPLEXED WITH 5-FLUORO-6-AMINO -UMP, PRODUCED FROM 5-FLUORO-6-AZIDO-UMP

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 9)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File