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(-) Description

Title :  UNASSEMBLED KI POLYOMAVIRUS VP1 PENTAMER
 
Authors :  U. Neu, T. Stehle
Date :  27 May 11  (Deposition) - 29 Jun 11  (Release) - 29 Jun 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.55
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,B,C,D,E  (1x)
Biol. Unit 2:  F,G,H,I,J  (1x)
Keywords :  Jelly-Roll, Antiparallel Beta Sandwich, Major Capsid Protein, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. Neu, J. Wang, D. Macejak, R. L. Garcea, T. Stehle
Structures Of The Major Capsid Proteins Of The Human Ki And Wu Polyomaviruses.
J. Virol. V. 85 7384 2011
PubMed-ID: 21543504  |  Reference-DOI: 10.1128/JVI.00382-11

(-) Compounds

Molecule 1 - MAJOR CAPSID PROTEIN VP1
    Chains: A, B, C, D, E, F, G, H, I, J
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 32-304
    Gene: VP1
    Organism Scientific: KI POLYOMAVIRUS
    Organism Taxid: 423445
    Synonym: MAJOR STRUCTURAL PROTEIN VP1

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): ABCDE     
Biological Unit 2 (1x):      FGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3S7V)

(-) Sites  (0, 0)

(no "Site" information available for 3S7V)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3S7V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3S7V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3S7V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3S7V)

(-) Exons   (0, 0)

(no "Exon" information available for 3S7V)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:257
 aligned with VP1_POVKI | A3R4N3 from UniProtKB/Swiss-Prot  Length:378

    Alignment length:270
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304
            VP1_POVKI    35 EVLAAVPLSEETEFKVELFVKPVIGNTTAAQDGREPTPHYWSISSAIHDKESGSSIKVEETPDADTTVCYSLAEIAPPDIPNQVSECDMKVWELYRMETELLVVPLVNALGNTNGVVHGLAGTQLYFWAVGGQPLDVVGVTPTDKYKGPTTYTINPPGDPRTLHVYNSNTPKAKVTSERYSVESWAPDPSRNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGILCLQGRLYITCADMLGTANSRIHTPMARFFRLHFRQRRVKN 304
               SCOP domains d3s7va_ A: automated matches                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee........eeeeeee..ee.....-----............................hhhh.ee.eeeee.....--------.eeeeeeeeeeeee....hhhh.ee..ee......eeeeeeee....eeee...................hhhhh........eee..........eee.......eeeeeeee.......eeeee....ee........ee.....eeeeeeee.eee..eee...eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3s7v A  35 EVLAAVPLSEETEFKVELFVKPVIGNTTA-----EPTPHYWSISSAIHDKESGSSIKVEETPDADTTVCYSLAEIAPPDI--------MKVWELYRMETELLVVPLVNALGNTNGVVHGLAGTQLYFWAVGGQPLDVVGVTPTDKYKGPTTYTINPPGDPRTLHVYNSNTPKAKVTSERYSVESWAPDPSRNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGILCLQGRLYITCADMLGTANSRIHTPMARFFRLHFRQRRVKN 304
                                    44        54        |-    |   74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304
                                                       63    69                                          114      123                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:262
 aligned with VP1_POVKI | A3R4N3 from UniProtKB/Swiss-Prot  Length:378

    Alignment length:269
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294         
            VP1_POVKI    35 EVLAAVPLSEETEFKVELFVKPVIGNTTAAQDGREPTPHYWSISSAIHDKESGSSIKVEETPDADTTVCYSLAEIAPPDIPNQVSECDMKVWELYRMETELLVVPLVNALGNTNGVVHGLAGTQLYFWAVGGQPLDVVGVTPTDKYKGPTTYTINPPGDPRTLHVYNSNTPKAKVTSERYSVESWAPDPSRNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGILCLQGRLYITCADMLGTANSRIHTPMARFFRLHFRQRRVK 303
               SCOP domains d3s7vb_ B: automated matches                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee........eeeeeee..ee.......--.........eeee................hhhh.ee.eeeee........-----.eeeeeeeeeeeee....hhhh.ee..ee......eeeeeeee....eeee...................hhhhh........eee..........eee.......eeeeeeee.......eeeee....ee........ee.....eeeeeeee.eee..eee...eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s7v B  35 EVLAAVPLSEETEFKVELFVKPVIGNTTAAQ--REPTPHYWSISSAIHDKESGSSIKVEETPDADTTVCYSLAEIAPPDIPNQ-----MKVWELYRMETELLVVPLVNALGNTNGVVHGLAGTQLYFWAVGGQPLDVVGVTPTDKYKGPTTYTINPPGDPRTLHVYNSNTPKAKVTSERYSVESWAPDPSRNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGILCLQGRLYITCADMLGTANSRIHTPMARFFRLHFRQRRVK 303
                                    44        54        64|  |    74        84        94       104       114  |    124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294         
                                                         65 68                                              117   123                                                                                                                                                                                    


Chain C from PDB  Type:PROTEIN  Length:268
 aligned with VP1_POVKI | A3R4N3 from UniProtKB/Swiss-Prot  Length:378

    Alignment length:271
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303 
            VP1_POVKI    34 VEVLAAVPLSEETEFKVELFVKPVIGNTTAAQDGREPTPHYWSISSAIHDKESGSSIKVEETPDADTTVCYSLAEIAPPDIPNQVSECDMKVWELYRMETELLVVPLVNALGNTNGVVHGLAGTQLYFWAVGGQPLDVVGVTPTDKYKGPTTYTINPPGDPRTLHVYNSNTPKAKVTSERYSVESWAPDPSRNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGILCLQGRLYITCADMLGTANSRIHTPMARFFRLHFRQRRVKN 304
               SCOP domains d3s7vc_ C: automated matches                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee........eeeeeee..ee.....---..............................hhhh.ee.eeeee.............eeeeeeeeeeeeee....hhhh.ee..ee......eeeeeeee....eeee...................hhhhh........eee..........eee.......eeeeeeee.......eeeee....ee........ee.....eeeeeeee.eee..eee...eeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s7v C  34 VEVLAAVPLSEETEFKVELFVKPVIGNTTA---GREPTPHYWSISSAIHDKESGSSIKVEETPDADTTVCYSLAEIAPPDIPNQVSECDMKVWELYRMETELLVVPLVNALGNTNGVVHGLAGTQLYFWAVGGQPLDVVGVTPTDKYKGPTTYTINPPGDPRTLHVYNSNTPKAKVTSERYSVESWAPDPSRNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGILCLQGRLYITCADMLGTANSRIHTPMARFFRLHFRQRRVKN 304
                                    43        53        63   |    73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303 
                                                        63  67                                                                                                                                                                                                                                             


Chain D from PDB  Type:PROTEIN  Length:261
 aligned with VP1_POVKI | A3R4N3 from UniProtKB/Swiss-Prot  Length:378

    Alignment length:271
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303 
            VP1_POVKI    34 VEVLAAVPLSEETEFKVELFVKPVIGNTTAAQDGREPTPHYWSISSAIHDKESGSSIKVEETPDADTTVCYSLAEIAPPDIPNQVSECDMKVWELYRMETELLVVPLVNALGNTNGVVHGLAGTQLYFWAVGGQPLDVVGVTPTDKYKGPTTYTINPPGDPRTLHVYNSNTPKAKVTSERYSVESWAPDPSRNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGILCLQGRLYITCADMLGTANSRIHTPMARFFRLHFRQRRVKN 304
               SCOP domains d3s7vd_ D: automated matches                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee........eeeeeee..ee......---.........eeee................hhhh.ee.eeeee.....-------..eeeeeeeeeeeee....hhhh.ee..ee......eeeeeeee....eeee................................eee..........eee.......eeeeeeee.......eeeee....ee........ee.....eeeeeeee.eee..eee...eeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s7v D  34 VEVLAAVPLSEETEFKVELFVKPVIGNTTAA---REPTPHYWSISSAIHDKESGSSIKVEETPDADTTVCYSLAEIAPPDI-------DMKVWELYRMETELLVVPLVNALGNTNGVVHGLAGTQLYFWAVGGQPLDVVGVTPTDKYKGPTTYTINPPGDPRTLHVYNSNTPKAKVTSERYSVESWAPDPSRNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGILCLQGRLYITCADMLGTANSRIHTPMARFFRLHFRQRRVKN 304
                                    43        53        63|   |   73        83        93       103       113|      123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303 
                                                         64  68                                           114     122                                                                                                                                                                                      


Chain E from PDB  Type:PROTEIN  Length:261
 aligned with VP1_POVKI | A3R4N3 from UniProtKB/Swiss-Prot  Length:378

    Alignment length:270
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304
            VP1_POVKI    35 EVLAAVPLSEETEFKVELFVKPVIGNTTAAQDGREPTPHYWSISSAIHDKESGSSIKVEETPDADTTVCYSLAEIAPPDIPNQVSECDMKVWELYRMETELLVVPLVNALGNTNGVVHGLAGTQLYFWAVGGQPLDVVGVTPTDKYKGPTTYTINPPGDPRTLHVYNSNTPKAKVTSERYSVESWAPDPSRNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGILCLQGRLYITCADMLGTANSRIHTPMARFFRLHFRQRRVKN 304
               SCOP domains d3s7ve_ E: automated matches                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee........eeeeeee..ee.......--.............................hhhh.ee.eeeee......-------.eeeeeeeeeeeee....hhhh.ee..ee......eeeeeeee....eeee...................hhhhh........eee..........eee.......eeeeeeee.......eeeee....ee........ee.....eeeeeeee.eee..eee...eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3s7v E  35 EVLAAVPLSEETEFKVELFVKPVIGNTTAAQ--REPTPHYWSISSAIHDKESGSSIKVEETPDADTTVCYSLAEIAPPDIP-------MKVWELYRMETELLVVPLVNALGNTNGVVHGLAGTQLYFWAVGGQPLDVVGVTPTDKYKGPTTYTINPPGDPRTLHVYNSNTPKAKVTSERYSVESWAPDPSRNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGILCLQGRLYITCADMLGTANSRIHTPMARFFRLHFRQRRVKN 304
                                    44        54        64|  |    74        84        94       104       114|      124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304
                                                         65 68                                            115     123                                                                                                                                                                                     


Chain F from PDB  Type:PROTEIN  Length:266
 aligned with VP1_POVKI | A3R4N3 from UniProtKB/Swiss-Prot  Length:378

    Alignment length:275
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299     
            VP1_POVKI    30 KKGGVEVLAAVPLSEETEFKVELFVKPVIGNTTAAQDGREPTPHYWSISSAIHDKESGSSIKVEETPDADTTVCYSLAEIAPPDIPNQVSECDMKVWELYRMETELLVVPLVNALGNTNGVVHGLAGTQLYFWAVGGQPLDVVGVTPTDKYKGPTTYTINPPGDPRTLHVYNSNTPKAKVTSERYSVESWAPDPSRNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGILCLQGRLYITCADMLGTANSRIHTPMARFFRLHFRQRRVKN 304
               SCOP domains --   d3s7vf1 F:35-304 automated matches                                                                                                                                                                                                                                             SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..---.eeee........eeeeeee..ee..................eeee................hhhh.ee.eeeee......------.eeeeeeeeeeeeee....hhhh.ee..ee......eeeeeeee....eeee...................hhhhh........eee..........eee.......eeeeeeee.......eeeee....ee........ee.....eeeeeeee.eee..eee...eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s7v F  30 HM---EVLAAVPLSEETEFKVELFVKPVIGNTTAAQDGREPTPHYWSISSAIHDKESGSSIKVEETPDADTTVCYSLAEIAPPDIP------DMKVWELYRMETELLVVPLVNALGNTNGVVHGLAGTQLYFWAVGGQPLDVVGVTPTDKYKGPTTYTINPPGDPRTLHVYNSNTPKAKVTSERYSVESWAPDPSRNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGILCLQGRLYITCADMLGTANSRIHTPMARFFRLHFRQRRVKN 304
                             |   |  39        49        59        69        79        89        99       109     |   -  |    129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299     
                            31  35                                                                             115    122                                                                                                                                                                                      


Chain G from PDB  Type:PROTEIN  Length:258
 aligned with VP1_POVKI | A3R4N3 from UniProtKB/Swiss-Prot  Length:378

    Alignment length:270
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304
            VP1_POVKI    35 EVLAAVPLSEETEFKVELFVKPVIGNTTAAQDGREPTPHYWSISSAIHDKESGSSIKVEETPDADTTVCYSLAEIAPPDIPNQVSECDMKVWELYRMETELLVVPLVNALGNTNGVVHGLAGTQLYFWAVGGQPLDVVGVTPTDKYKGPTTYTINPPGDPRTLHVYNSNTPKAKVTSERYSVESWAPDPSRNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGILCLQGRLYITCADMLGTANSRIHTPMARFFRLHFRQRRVKN 304
               SCOP domains d3s7vg_ G: automated matches                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee........eeeeeee..ee.....-----........eeee................hhhh.ee.eeeee.....-------.eeeeeeeeeeeeee....hhhh.ee..ee......eeeeeeee....eeee...................hhhhh........eee..........eee.......eeeeeeee.......eeeee....ee........ee.....eeeeeeee.eee..eee...eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3s7v G  35 EVLAAVPLSEETEFKVELFVKPVIGNTTA-----EPTPHYWSISSAIHDKESGSSIKVEETPDADTTVCYSLAEIAPPDI-------DMKVWELYRMETELLVVPLVNALGNTNGVVHGLAGTQLYFWAVGGQPLDVVGVTPTDKYKGPTTYTINPPGDPRTLHVYNSNTPKAKVTSERYSVESWAPDPSRNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGILCLQGRLYITCADMLGTANSRIHTPMARFFRLHFRQRRVKN 304
                                    44        54        |-    |   74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304
                                                       63    69                                          114     122                                                                                                                                                                                      


Chain H from PDB  Type:PROTEIN  Length:265
 aligned with VP1_POVKI | A3R4N3 from UniProtKB/Swiss-Prot  Length:378

    Alignment length:270
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303
            VP1_POVKI    34 VEVLAAVPLSEETEFKVELFVKPVIGNTTAAQDGREPTPHYWSISSAIHDKESGSSIKVEETPDADTTVCYSLAEIAPPDIPNQVSECDMKVWELYRMETELLVVPLVNALGNTNGVVHGLAGTQLYFWAVGGQPLDVVGVTPTDKYKGPTTYTINPPGDPRTLHVYNSNTPKAKVTSERYSVESWAPDPSRNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGILCLQGRLYITCADMLGTANSRIHTPMARFFRLHFRQRRVK 303
               SCOP domains d3s7vh_ H: automated matches                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee........eeeeeee..ee.....-----............................hhhh.ee.eeeee.............eeeeeeeeeeeeee....hhhh.ee..ee......eeeeeeee....eeee...................hhhhh........eee..........eee.......eeeeeeee.......eeeee....ee........ee.....eeeeeeee.eee..eee...eeeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3s7v H  34 VEVLAAVPLSEETEFKVELFVKPVIGNTTA-----EPTPHYWSISSAIHDKESGSSIKVEETPDADTTVCYSLAEIAPPDIPNQVSECDMKVWELYRMETELLVVPLVNALGNTNGVVHGLAGTQLYFWAVGGQPLDVVGVTPTDKYKGPTTYTINPPGDPRTLHVYNSNTPKAKVTSERYSVESWAPDPSRNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGILCLQGRLYITCADMLGTANSRIHTPMARFFRLHFRQRRVK 303
                                    43        53        63     |  73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303
                                                        63    69                                                                                                                                                                                                                                          


Chain I from PDB  Type:PROTEIN  Length:256
 aligned with VP1_POVKI | A3R4N3 from UniProtKB/Swiss-Prot  Length:378

    Alignment length:269
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295         
            VP1_POVKI    36 VLAAVPLSEETEFKVELFVKPVIGNTTAAQDGREPTPHYWSISSAIHDKESGSSIKVEETPDADTTVCYSLAEIAPPDIPNQVSECDMKVWELYRMETELLVVPLVNALGNTNGVVHGLAGTQLYFWAVGGQPLDVVGVTPTDKYKGPTTYTINPPGDPRTLHVYNSNTPKAKVTSERYSVESWAPDPSRNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGILCLQGRLYITCADMLGTANSRIHTPMARFFRLHFRQRRVKN 304
               SCOP domains d3s7vi_ I: automated matches                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeeee..ee.....-----........eeee................hhhh.ee.eeeee.....--------.eeeeeeeeeeeee....hhhh.ee..ee......eeeeeeee....eeee...................hhhhh........eee..........eee.......eeeeeeee.......eeeee....ee........ee.....eeeeeeee.eee..eee...eeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s7v I  36 VLAAVPLSEETEFKVELFVKPVIGNTTA-----EPTPHYWSISSAIHDKESGSSIKVEETPDADTTVCYSLAEIAPPDI--------MKVWELYRMETELLVVPLVNALGNTNGVVHGLAGTQLYFWAVGGQPLDVVGVTPTDKYKGPTTYTINPPGDPRTLHVYNSNTPKAKVTSERYSVESWAPDPSRNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGILCLQGRLYITCADMLGTANSRIHTPMARFFRLHFRQRRVKN 304
                                    45        55       | -   |    75        85        95       105        |-       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295         
                                                      63    69                                          114      123                                                                                                                                                                                     


Chain J from PDB  Type:PROTEIN  Length:261
 aligned with VP1_POVKI | A3R4N3 from UniProtKB/Swiss-Prot  Length:378

    Alignment length:270
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304
            VP1_POVKI    35 EVLAAVPLSEETEFKVELFVKPVIGNTTAAQDGREPTPHYWSISSAIHDKESGSSIKVEETPDADTTVCYSLAEIAPPDIPNQVSECDMKVWELYRMETELLVVPLVNALGNTNGVVHGLAGTQLYFWAVGGQPLDVVGVTPTDKYKGPTTYTINPPGDPRTLHVYNSNTPKAKVTSERYSVESWAPDPSRNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGILCLQGRLYITCADMLGTANSRIHTPMARFFRLHFRQRRVKN 304
               SCOP domains d3s7vj_ J: automated matches                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) Polyoma_coat-3s7vJ01 J:35-304                                                                                                                                                                                                                                                  Pfam domains (1)
           Pfam domains (2) Polyoma_coat-3s7vJ02 J:35-304                                                                                                                                                                                                                                                  Pfam domains (2)
           Pfam domains (3) Polyoma_coat-3s7vJ03 J:35-304                                                                                                                                                                                                                                                  Pfam domains (3)
           Pfam domains (4) Polyoma_coat-3s7vJ04 J:35-304                                                                                                                                                                                                                                                  Pfam domains (4)
           Pfam domains (5) Polyoma_coat-3s7vJ05 J:35-304                                                                                                                                                                                                                                                  Pfam domains (5)
           Pfam domains (6) Polyoma_coat-3s7vJ06 J:35-304                                                                                                                                                                                                                                                  Pfam domains (6)
           Pfam domains (7) Polyoma_coat-3s7vJ07 J:35-304                                                                                                                                                                                                                                                  Pfam domains (7)
           Pfam domains (8) Polyoma_coat-3s7vJ08 J:35-304                                                                                                                                                                                                                                                  Pfam domains (8)
           Pfam domains (9) Polyoma_coat-3s7vJ09 J:35-304                                                                                                                                                                                                                                                  Pfam domains (9)
          Pfam domains (10) Polyoma_coat-3s7vJ10 J:35-304                                                                                                                                                                                                                                                  Pfam domains (10)
         Sec.struct. author .eeee........eeeeeee..ee.....-----........eeee................hhhh.ee.eeeee........----.eeeeeeeeeeeeee....hhhh.ee..ee......eeeeeeee....eeee...................hhhhh........eee..........eee.......eeeeeeee.......eeeee....ee........ee.....eeeeeeee.eee..eee...eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3s7v J  35 EVLAAVPLSEETEFKVELFVKPVIGNTTA-----EPTPHYWSISSAIHDKESGSSIKVEETPDADTTVCYSLAEIAPPDIPNQ----DMKVWELYRMETELLVVPLVNALGNTNGVVHGLAGTQLYFWAVGGQPLDVVGVTPTDKYKGPTTYTINPPGDPRTLHVYNSNTPKAKVTSERYSVESWAPDPSRNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGILCLQGRLYITCADMLGTANSRIHTPMARFFRLHFRQRRVKN 304
                                    44        54        |-    |   74        84        94       104       114  |    124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304
                                                       63    69                                             117  122
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 10)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3S7V)

(-) Pfam Domains  (1, 10)

Asymmetric Unit
(-)
Clan: no clan defined [family: Polyoma_coat] (8)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J   (VP1_POVKI | A3R4N3)
molecular function
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0075509    endocytosis involved in viral entry into host cell    Any endocytosis that is involved in the uptake of a virus into a host cell.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0039620    T=7 icosahedral viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=7 symmetry. The T=7 capsid is composed of 12 pentameric and 60 hexameric capsomeres.
    GO:0042025    host cell nucleus    A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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  3s7v
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

1vps OTHER POLYOMAVIRUS CAPSOMER
3bwr OTHER POLYOMAVIRUS CAPSOMER
3nxg OTHER POLYOMAVIRUS CAPSOMER
3s7x