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(-) Description

Title :  CRYSTAL STRUCTURE OF CRISPR ASSOCIATED PROTEIN
 
Authors :  A. Ke, K. H. Nam
Date :  23 May 11  (Deposition) - 22 Jun 11  (Release) - 22 Jun 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,F,G,H  (1x)
Biol. Unit 2:  B,C,D,E  (1x)
Keywords :  Crispr, Crispr Adaptation Mechanism, New Spacer Aquisition, Dsdna Binding, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Ke, K. H. Nam
Crystal Structure Of Crispr Associated Protein
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 (DE3) STAR
    Expression System Taxid: 562
    Gene: EFDG_01320
    Organism Scientific: ENTEROCOCCUS FAECALIS
    Organism Taxid: 565642
    Strain: ATCC 4200

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A    FGH
Biological Unit 2 (1x):  BCDE   

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 16)

Asymmetric Unit (1, 16)
No.NameCountTypeFull Name
1CA16Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:138 , ASP A:142 , GLU A:150 , ASP G:118BINDING SITE FOR RESIDUE CA A 220
02AC2SOFTWAREASP A:122 , GLY A:123 , GLU A:128 , HOH A:223 , HOH A:239 , ALA G:132BINDING SITE FOR RESIDUE CA A 221
03AC3SOFTWAREASP B:122 , GLY B:123 , GLU B:128 , HOH B:223 , HOH B:227 , ALA D:132BINDING SITE FOR RESIDUE CA B 220
04AC4SOFTWAREGLU B:138 , ASP B:142 , GLU B:150 , ASP D:118BINDING SITE FOR RESIDUE CA B 221
05AC5SOFTWAREASP C:122 , GLY C:123 , GLU C:128 , HOH C:227 , ALA E:132BINDING SITE FOR RESIDUE CA C 220
06AC6SOFTWAREGLU C:138 , ASP C:142 , GLU C:150 , ASP E:118BINDING SITE FOR RESIDUE CA C 221
07AC7SOFTWAREASP B:118 , GLU D:138 , ASP D:142 , GLU D:150BINDING SITE FOR RESIDUE CA D 220
08AC8SOFTWAREALA B:132 , HOH B:229 , ASP D:122 , GLY D:123 , GLU D:128 , HOH D:228BINDING SITE FOR RESIDUE CA D 221
09AC9SOFTWAREALA C:132 , ASP E:122 , GLY E:123 , GLU E:128 , HOH E:229 , HOH E:230BINDING SITE FOR RESIDUE CA E 220
10BC1SOFTWAREASP C:118 , GLU E:138 , ASP E:142 , GLU E:150 , HOH E:226BINDING SITE FOR RESIDUE CA E 221
11BC2SOFTWAREASP F:122 , GLY F:123 , GLU F:128 , ALA H:132BINDING SITE FOR RESIDUE CA F 220
12BC3SOFTWAREGLU F:138 , ASP F:142 , GLU F:150 , ASP H:118BINDING SITE FOR RESIDUE CA F 221
13BC4SOFTWAREALA A:132 , ASP G:122 , GLY G:123 , GLU G:128 , HOH G:223 , HOH G:232BINDING SITE FOR RESIDUE CA G 220
14BC5SOFTWAREASP A:118 , GLU G:138 , ASP G:142 , GLU G:150BINDING SITE FOR RESIDUE CA G 221
15BC6SOFTWAREALA F:132 , ASP H:122 , GLY H:123 , GLU H:128 , HOH H:223 , HOH H:236BINDING SITE FOR RESIDUE CA H 220
16BC7SOFTWAREASP F:118 , GLU H:138 , ASP H:142 , GLU H:150BINDING SITE FOR RESIDUE CA H 221

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3S5U)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Glu E:9 -Glu E:10
2Asn F:211 -Phe F:212

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3S5U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3S5U)

(-) Exons   (0, 0)

(no "Exon" information available for 3S5U)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:212
 aligned with CSN2_ENTFL | C7UDU4 from UniProtKB/Swiss-Prot  Length:219

    Alignment length:218
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211        
           CSN2_ENTFL     2 RVNFSLLEEPIEIEKATFLTIKDVQSFAHLVKLIYQYDGENELKLFDAQQKGLKPTELFVVTDILGYDVNSAATLKLIYGDLEAQLNDKPEVKSMIEKLTGTISQLIGYELLEHEMDLEEDGIIVQELFKALGIKIETTSDTIFEKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRVVQNRFQYILDENFYLSYEKA 219
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee......ee...eeeeee.hhhhhhhhhhhhhhh.--..ee.----....hhh.eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee....hhhhhhhhh..ee.....hhhhhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhhhhhh...eeeee.........eee.....ee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s5u A   2 RVNFSLLEEPIEIEKATFLTIKDVQSFAHLVKLIYQYD--NELKL----QKGLKPTELFVVTDILGYDVNSAATLKLIYGDLEAQLNDKPEVKSMIEKLTGTISQLIGYELLEHEMDLEEDGIIVQELFKALGIKIETTSDTIFEKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRVVQNRFQYILDENFYLSYEKA 219
                                    11        21        31       | -|   |   51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211        
                                                                39 42  46   51                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:199
 aligned with CSN2_ENTFL | C7UDU4 from UniProtKB/Swiss-Prot  Length:219

    Alignment length:218
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211        
           CSN2_ENTFL     2 RVNFSLLEEPIEIEKATFLTIKDVQSFAHLVKLIYQYDGENELKLFDAQQKGLKPTELFVVTDILGYDVNSAATLKLIYGDLEAQLNDKPEVKSMIEKLTGTISQLIGYELLEHEMDLEEDGIIVQELFKALGIKIETTSDTIFEKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRVVQNRFQYILDENFYLSYEKA 219
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..----..ee..eeeeee.hhhhhhhhhhhhhh..---------------....eeee.........hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh....ee....hhhhhhhhh..ee.....hhhhhhhhhhhhhhhh....eeeee.hhhh.hhhhhhhhhhhhhhhh.eeeeee........eeee.....eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s5u B   2 RVNFS----PIEIEKATFLTIKDVQSFAHLVKLIYQYD---------------KPTELFVVTDILGYDVNSAATLKLIYGDLEAQLNDKPEVKSMIEKLTGTISQLIGYELLEHEMDLEEDGIIVQELFKALGIKIETTSDTIFEKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRVVQNRFQYILDENFYLSYEKA 219
                                |   11        21        31       | -         -   |    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211        
                                6   11                          39              55                                                                                                                                                                    


Chain C from PDB  Type:PROTEIN  Length:210
 aligned with CSN2_ENTFL | C7UDU4 from UniProtKB/Swiss-Prot  Length:219

    Alignment length:218
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211        
           CSN2_ENTFL     2 RVNFSLLEEPIEIEKATFLTIKDVQSFAHLVKLIYQYDGENELKLFDAQQKGLKPTELFVVTDILGYDVNSAATLKLIYGDLEAQLNDKPEVKSMIEKLTGTISQLIGYELLEHEMDLEEDGIIVQELFKALGIKIETTSDTIFEKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRVVQNRFQYILDENFYLSYEKA 219
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..--...ee...eeeeee.hhhhhhhhhhhhhh....-....-----...hhh.eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee....hhhhhhhhh..ee.....hhhhhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhhhhhh...eeeee........eeee.....eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s5u C   2 RVNFS--EEPIEIEKATFLTIKDVQSFAHLVKLIYQYDGE-ELKL-----KGLKPTELFVVTDILGYDVNSAATLKLIYGDLEAQLNDKPEVKSMIEKLTGTISQLIGYELLEHEMDLEEDGIIVQELFKALGIKIETTSDTIFEKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRVVQNRFQYILDENFYLSYEKA 219
                                |  |11        21        31        41 |  |    -|       61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211        
                                6  9                              41 | 46    52                                                                                                                                                                       
                                                                    43                                                                                                                                                                                


Chain D from PDB  Type:PROTEIN  Length:212
 aligned with CSN2_ENTFL | C7UDU4 from UniProtKB/Swiss-Prot  Length:219

    Alignment length:217
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       
           CSN2_ENTFL     2 RVNFSLLEEPIEIEKATFLTIKDVQSFAHLVKLIYQYDGENELKLFDAQQKGLKPTELFVVTDILGYDVNSAATLKLIYGDLEAQLNDKPEVKSMIEKLTGTISQLIGYELLEHEMDLEEDGIIVQELFKALGIKIETTSDTIFEKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRVVQNRFQYILDENFYLSYEK 218
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.....ee...eeeeee.hhhhhhhhhhhhhh.....eeee.-----..hhh.eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....ee....hhhhhhhhh..ee.....hhhhhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhhhhhh...eeeee........eeee.....eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s5u D   2 RVNFSLLEEPIEIEKATFLTIKDVQSFAHLVKLIYQYDGENELKLF-----GLKPTELFVVTDILGYDVNSAATLKLIYGDLEAQLNDKPEVKSMIEKLTGTISQLIGYELLEHEMDLEEDGIIVQELFKALGIKIETTSDTIFEKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRVVQNRFQYILDENFYLSYEK 218
                                    11        21        31        41     |   - |      61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       
                                                                        47    53                                                                                                                                                                     


Chain E from PDB  Type:PROTEIN  Length:213
 aligned with CSN2_ENTFL | C7UDU4 from UniProtKB/Swiss-Prot  Length:219

    Alignment length:217
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       
           CSN2_ENTFL     2 RVNFSLLEEPIEIEKATFLTIKDVQSFAHLVKLIYQYDGENELKLFDAQQKGLKPTELFVVTDILGYDVNSAATLKLIYGDLEAQLNDKPEVKSMIEKLTGTISQLIGYELLEHEMDLEEDGIIVQELFKALGIKIETTSDTIFEKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRVVQNRFQYILDENFYLSYEK 218
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee......ee...eeeeee.hhhhhhhhhhhhhhh.....ee.----....hhh.eeee.........hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh....ee....hhhhhhhhh..ee.....hhhhhhhhhhhhhhhh....eeeee.hhhh.hhhhhhhhhhhhhhh...eeeee........eeee.....eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s5u E   2 RVNFSLLEEPIEIEKATFLTIKDVQSFAHLVKLIYQYDGENELKL----QKGLKPTELFVVTDILGYDVNSAATLKLIYGDLEAQLNDKPEVKSMIEKLTGTISQLIGYELLEHEMDLEEDGIIVQELFKALGIKIETTSDTIFEKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRVVQNRFQYILDENFYLSYEK 218
                                    11        21        31        41    |   51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       
                                                                       46   51                                                                                                                                                                       


Chain F from PDB  Type:PROTEIN  Length:210
 aligned with CSN2_ENTFL | C7UDU4 from UniProtKB/Swiss-Prot  Length:219

    Alignment length:218
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211        
           CSN2_ENTFL     2 RVNFSLLEEPIEIEKATFLTIKDVQSFAHLVKLIYQYDGENELKLFDAQQKGLKPTELFVVTDILGYDVNSAATLKLIYGDLEAQLNDKPEVKSMIEKLTGTISQLIGYELLEHEMDLEEDGIIVQELFKALGIKIETTSDTIFEKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRVVQNRFQYILDENFYLSYEKA 219
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.----.ee...eeeeee.hhhhhhhhhhhhhh......eee.----.......eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....ee....hhhhhhhhh..ee.....hhhhhhhhhhhhhhhh....eeeee.hhhh.hhhhhhhhhhhhhhhh..eeeee.......eeeee.....eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s5u F   2 RVNFS----PIEIEKATFLTIKDVQSFAHLVKLIYQYDGENELKLF----KGLKPTELFVVTDILGYDVNSAATLKLIYGDLEAQLNDKPEVKSMIEKLTGTISQLIGYELLEHEMDLEEDGIIVQELFKALGIKIETTSDTIFEKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRVVQNRFQYILDENFYLSYEKA 219
                                |   11        21        31        41     |   -|       61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211        
                                6   11                                  47   52                                                                                                                                                                       


Chain G from PDB  Type:PROTEIN  Length:209
 aligned with CSN2_ENTFL | C7UDU4 from UniProtKB/Swiss-Prot  Length:219

    Alignment length:217
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       
           CSN2_ENTFL     2 RVNFSLLEEPIEIEKATFLTIKDVQSFAHLVKLIYQYDGENELKLFDAQQKGLKPTELFVVTDILGYDVNSAATLKLIYGDLEAQLNDKPEVKSMIEKLTGTISQLIGYELLEHEMDLEEDGIIVQELFKALGIKIETTSDTIFEKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRVVQNRFQYILDENFYLSYEK 218
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.---...ee...eeeeee.hhhhhhhhhhhhhhh.---...ee...--..hhh.eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee....hhhhhhhhh..ee.....hhhhhhhhhhhhhhhh....eeeee.hhhh.hhhhhhhhhhhhhh...eeeeee.........eee.....eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s5u G   2 RVNF---EEPIEIEKATFLTIKDVQSFAHLVKLIYQYD---ELKLFDAQ--GLKPTELFVVTDILGYDVNSAATLKLIYGDLEAQLNDKPEVKSMIEKLTGTISQLIGYELLEHEMDLEEDGIIVQELFKALGIKIETTSDTIFEKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRVVQNRFQYILDENFYLSYEK 218
                               |   |11        21        31       | - |      |- |      61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       
                               5   9                            39  44     51 53                                                                                                                                                                     


Chain H from PDB  Type:PROTEIN  Length:213
 aligned with CSN2_ENTFL | C7UDU4 from UniProtKB/Swiss-Prot  Length:219

    Alignment length:217
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       
           CSN2_ENTFL     3 VNFSLLEEPIEIEKATFLTIKDVQSFAHLVKLIYQYDGENELKLFDAQQKGLKPTELFVVTDILGYDVNSAATLKLIYGDLEAQLNDKPEVKSMIEKLTGTISQLIGYELLEHEMDLEEDGIIVQELFKALGIKIETTSDTIFEKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRVVQNRFQYILDENFYLSYEKA 219
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..-..ee...eeeeee.hhhhhhhhhhhhhh.......ee..---...hhh.eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee....hhhhhhhhh..ee.....hhhhhhhhhhhhhhhh....eeeee.hhhh.hhhhhhhhhhhhhhh..eeeeee........eeee.....eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s5u H   3 VNFSLL-EPIEIEKATFLTIKDVQSFAHLVKLIYQYDGENELKLFD---KGLKPTELFVVTDILGYDVNSAATLKLIYGDLEAQLNDKPEVKSMIEKLTGTISQLIGYELLEHEMDLEEDGIIVQELFKALGIKIETTSDTIFEKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRVVQNRFQYILDENFYLSYEKA 219
                                 | |12        22        32        42     |  52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       
                                 8 |                                    48  52                                                                                                                                                                       
                                  10
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3S5U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3S5U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3S5U)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (CSN2_ENTFL | C7UDU4)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0051607    defense response to virus    Reactions triggered in response to the presence of a virus that act to protect the cell or organism.

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  3s5u
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 Related Entries

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