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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE SHORT-CHAIN DEHYDROGENASE/REDUCTASE FROM MYCOBACTERIUM ABSCESSUS BOUND TO NAD
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  20 May 11  (Deposition) - 08 Jun 11  (Release) - 08 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Ortholog, Sdr, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. H. Haft, P. G. Pierce, S. J. Mayclin, A. Sullivan, A. S. Gardberg, J. Abendroth, D. W. Begley, I. Q. Phan, B. L. Staker, P. J. Myler, V. M. Marathias, D. D. Lorimer, T. E. Edwards
Mycofactocin-Associated Mycobacterial Dehydrogenases With Non-Exchangeable Nad Cofactors.
Sci Rep V. 7 41074 2017
PubMed-ID: 28120876  |  Reference-DOI: 10.1038/SREP41074
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PUTATIVE SHORT-CHAIN DEHYDROGENASE/REDUCTASE
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PAVA0421
    Gene: MAB_1408C
    Organism Scientific: MYCOBACTERIUM ABSCESSUS
    Organism Taxid: 561007
    Strain: ATCC 19977 / DSM 44196

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 16)

Asymmetric Unit (2, 16)
No.NameCountTypeFull Name
1CA8Ligand/IonCALCIUM ION
2NAD8Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:14 , ARG A:17 , GLY A:18 , MET A:19 , ASP A:38 , ARG A:39 , ALA A:51 , VAL A:75 , ASP A:76 , VAL A:77 , ASN A:103 , ALA A:104 , GLY A:105 , ILE A:106 , THR A:126 , VAL A:153 , SER A:154 , SER A:155 , TYR A:168 , LYS A:172 , PRO A:198 , GLY A:199 , ASN A:200 , ILE A:201 , THR A:203 , PRO A:204 , MET A:205 , THR A:206 , HOH A:284 , HOH A:294 , HOH A:421 , HOH A:583 , HOH A:787BINDING SITE FOR RESIDUE NAD A 279
02AC2SOFTWAREGLY B:14 , ARG B:17 , GLY B:18 , MET B:19 , ASP B:38 , ARG B:39 , ALA B:51 , VAL B:75 , ASP B:76 , VAL B:77 , ASN B:103 , ALA B:104 , GLY B:105 , ILE B:106 , THR B:126 , VAL B:153 , SER B:154 , TYR B:168 , LYS B:172 , PRO B:198 , GLY B:199 , ASN B:200 , ILE B:201 , THR B:203 , PRO B:204 , MET B:205 , THR B:206 , HOH B:288 , HOH B:289 , HOH B:293 , HOH B:713BINDING SITE FOR RESIDUE NAD B 279
03AC3SOFTWAREGLY C:14 , ARG C:17 , MET C:19 , ASP C:38 , ARG C:39 , LEU C:50 , ALA C:51 , VAL C:75 , ASP C:76 , VAL C:77 , ASN C:103 , ALA C:104 , GLY C:105 , THR C:126 , VAL C:153 , SER C:154 , TYR C:168 , LYS C:172 , PRO C:198 , GLY C:199 , ASN C:200 , ILE C:201 , THR C:203 , PRO C:204 , MET C:205 , THR C:206 , HOH C:281 , HOH C:282 , HOH C:299 , HOH C:300 , HOH C:320 , HOH C:515BINDING SITE FOR RESIDUE NAD C 279
04AC4SOFTWAREGLY D:14 , ARG D:17 , GLY D:18 , MET D:19 , ASP D:38 , ARG D:39 , LEU D:50 , ALA D:51 , VAL D:75 , ASP D:76 , VAL D:77 , ASN D:103 , ALA D:104 , GLY D:105 , ILE D:106 , THR D:126 , VAL D:153 , SER D:154 , SER D:155 , TYR D:168 , LYS D:172 , PRO D:198 , GLY D:199 , ILE D:201 , THR D:203 , PRO D:204 , MET D:205 , THR D:206 , HOH D:284 , HOH D:285 , HOH D:298 , HOH D:789 , HOH D:1050BINDING SITE FOR RESIDUE NAD D 279
05AC5SOFTWAREGLY E:14 , ARG E:17 , MET E:19 , ASP E:38 , ARG E:39 , LEU E:50 , ALA E:51 , VAL E:75 , ASP E:76 , VAL E:77 , ASN E:103 , ALA E:104 , GLY E:105 , ILE E:106 , THR E:126 , VAL E:153 , SER E:154 , TYR E:168 , LYS E:172 , PRO E:198 , GLY E:199 , ILE E:201 , THR E:203 , PRO E:204 , MET E:205 , THR E:206 , HOH E:281 , HOH E:298 , HOH E:300BINDING SITE FOR RESIDUE NAD E 279
06AC6SOFTWAREGLY F:14 , ARG F:17 , GLY F:18 , MET F:19 , ASP F:38 , ARG F:39 , ALA F:51 , VAL F:75 , ASP F:76 , VAL F:77 , ASN F:103 , ALA F:104 , GLY F:105 , ILE F:106 , THR F:126 , VAL F:153 , SER F:154 , TYR F:168 , LYS F:172 , PRO F:198 , GLY F:199 , ASN F:200 , ILE F:201 , THR F:203 , PRO F:204 , MET F:205 , THR F:206 , HOH F:287 , HOH F:288 , HOH F:296 , HOH F:302BINDING SITE FOR RESIDUE NAD F 279
07AC7SOFTWAREGLY G:14 , ARG G:17 , GLY G:18 , MET G:19 , ASP G:38 , ARG G:39 , LEU G:50 , ALA G:51 , VAL G:75 , ASP G:76 , VAL G:77 , ASN G:103 , ALA G:104 , GLY G:105 , THR G:126 , VAL G:153 , SER G:154 , SER G:155 , TYR G:168 , LYS G:172 , PRO G:198 , GLY G:199 , ILE G:201 , THR G:203 , PRO G:204 , MET G:205 , THR G:206 , HOH G:281 , HOH G:283 , HOH G:290 , HOH G:526 , HOH G:650BINDING SITE FOR RESIDUE NAD G 279
08AC8SOFTWAREGLY H:14 , ARG H:17 , MET H:19 , ASP H:38 , ARG H:39 , ALA H:51 , VAL H:75 , ASP H:76 , VAL H:77 , ASN H:103 , ALA H:104 , GLY H:105 , ILE H:106 , THR H:126 , VAL H:153 , SER H:154 , TYR H:168 , LYS H:172 , PRO H:198 , GLY H:199 , ASN H:200 , ILE H:201 , THR H:203 , PRO H:204 , MET H:205 , THR H:206 , HOH H:281 , HOH H:287 , HOH H:288 , HOH H:324 , HOH H:1217BINDING SITE FOR RESIDUE NAD H 279
09AC9SOFTWAREASP H:55 , GLU H:58 , HOH H:708 , HOH H:765BINDING SITE FOR RESIDUE CA H 280
10BC1SOFTWAREGLU A:6 , HOH A:923 , HOH A:924 , HOH A:925 , HOH A:926 , HOH F:1110BINDING SITE FOR RESIDUE CA A 280
11BC2SOFTWAREGLY B:96 , ASP B:98 , HOH B:845 , HOH B:961 , HOH E:455 , HOH E:962BINDING SITE FOR RESIDUE CA B 280
12BC3SOFTWAREGLU B:6 , HOH B:964 , HOH B:966 , HOH E:823BINDING SITE FOR RESIDUE CA B 281
13BC4SOFTWAREHOH B:812 , HOH B:902 , HOH B:978 , HOH B:979 , GLU E:6 , HOH E:980BINDING SITE FOR RESIDUE CA E 280
14BC5SOFTWAREGLU F:6 , HOH F:1105 , HOH F:1106 , HOH F:1107 , HOH F:1108 , HOH F:1109BINDING SITE FOR RESIDUE CA F 280
15BC6SOFTWAREASP D:55 , GLU D:58 , HOH D:1059BINDING SITE FOR RESIDUE CA D 280
16BC7SOFTWAREHOH A:302 , HOH A:955 , GLY F:96 , ASP F:98 , HOH F:722 , HOH F:1243BINDING SITE FOR RESIDUE CA F 281

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3S55)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Leu A:112 -Pro A:113
2Leu B:112 -Pro B:113
3Leu C:112 -Pro C:113
4Leu D:112 -Pro D:113
5Leu E:112 -Pro E:113
6Leu F:112 -Pro F:113
7Leu G:112 -Pro G:113
8Leu H:112 -Pro H:113

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3S55)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3S55)

(-) Exons   (0, 0)

(no "Exon" information available for 3S55)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:269
 aligned with B1MLR7_MYCA9 | B1MLR7 from UniProtKB/TrEMBL  Length:277

    Alignment length:276
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271      
         B1MLR7_MYCA9     2 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGATARMI 277
               SCOP domains d3s55a_ A: automated matches                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee...hhhhhhhhhhhhhh..eeeeee.............hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee.........hhhhhhh-------.hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee..hhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3s55 A   3 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGT-------PTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGATARMI 278
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212 |     222       232       242       252       262       272      
                                                                                                                                                                                                                                             214     222                                                        


Chain B from PDB  Type:PROTEIN  Length:270
 aligned with B1MLR7_MYCA9 | B1MLR7 from UniProtKB/TrEMBL  Length:277

    Alignment length:275
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272     
         B1MLR7_MYCA9     3 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGATARMI 277
               SCOP domains d3s55b_ B: automated matches                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee...hhhhhhhhhhhhhhh.eeeeee.............hhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhhh.-----.hhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh.....eeee..hhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s55 B   4 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMR-----PTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGATARMI 278
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213  |    223       233       243       253       263       273     
                                                                                                                                                                                                                                              216   222                                                        


Chain C from PDB  Type:PROTEIN  Length:269
 aligned with B1MLR7_MYCA9 | B1MLR7 from UniProtKB/TrEMBL  Length:277

    Alignment length:276
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271      
         B1MLR7_MYCA9     2 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGATARMI 277
               SCOP domains d3s55c_ C: automated matches                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee...hhhhhhhhhhhhhh..eeeeee.............hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee.hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee.........hhhhhh-------..hhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh.....eeee..hhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3s55 C   3 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFG-------KPTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGATARMI 278
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212|      222       232       242       252       262       272      
                                                                                                                                                                                                                                            213     221                                                         


Chain D from PDB  Type:PROTEIN  Length:275
 aligned with B1MLR7_MYCA9 | B1MLR7 from UniProtKB/TrEMBL  Length:277

    Alignment length:275
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272     
         B1MLR7_MYCA9     3 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGATARMI 277
               SCOP domains d3s55d_ D: automated matches                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee...hhhhhhhhhhhhhh..eeeeee.............hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee.........hhhhhhh........hhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh.....eeee..hhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s55 D   4 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGATARMI 278
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273     


Chain E from PDB  Type:PROTEIN  Length:266
 aligned with B1MLR7_MYCA9 | B1MLR7 from UniProtKB/TrEMBL  Length:277

    Alignment length:276
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271      
         B1MLR7_MYCA9     2 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGATARMI 277
               SCOP domains d3s55e_ E: automated matches                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee...hhhhhhhhhhhhhh..eeeeee.............hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee.........hhhhhhh----------..hhhhhhh.........hhhhhhhhhhhhhhhhhh.....eeee..hhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3s55 E   3 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGT----------KDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGATARMI 278
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212 |       -  |    232       242       252       262       272      
                                                                                                                                                                                                                                             214        225                                                     


Chain F from PDB  Type:PROTEIN  Length:275
 aligned with B1MLR7_MYCA9 | B1MLR7 from UniProtKB/TrEMBL  Length:277

    Alignment length:275
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272     
         B1MLR7_MYCA9     3 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGATARMI 277
               SCOP domains d3s55f_ F: automated matches                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee...hhhhhhhhhhhhhhh.eeeeee.............hhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee.........hhhhhhhhh......hhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh.....eeee..hhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s55 F   4 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGATARMI 278
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273     


Chain G from PDB  Type:PROTEIN  Length:269
 aligned with B1MLR7_MYCA9 | B1MLR7 from UniProtKB/TrEMBL  Length:277

    Alignment length:276
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271      
         B1MLR7_MYCA9     2 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGATARMI 277
               SCOP domains d3s55g_ G: automated matches                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee...hhhhhhhhhhhhhh..eeeeee.............hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhh.....eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee.........hhhhhhh-------.....hhhhhhh.........hhhhhhhhhhhhhhhhhh.....eeee..hhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3s55 G   3 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGT-------PTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGATARMI 278
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212 |     222       232       242       252       262       272      
                                                                                                                                                                                                                                             214     222                                                        


Chain H from PDB  Type:PROTEIN  Length:271
 aligned with B1MLR7_MYCA9 | B1MLR7 from UniProtKB/TrEMBL  Length:277

    Alignment length:275
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272     
         B1MLR7_MYCA9     3 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGATARMI 277
               SCOP domains d3s55h_ H: automated matches                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----adh_short-3s55H01 H:8-187                                                                                                                                                           ------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ----adh_short-3s55H02 H:8-187                                                                                                                                                           ------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ----adh_short-3s55H03 H:8-187                                                                                                                                                           ------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ----adh_short-3s55H04 H:8-187                                                                                                                                                           ------------------------------------------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) ----adh_short-3s55H05 H:8-187                                                                                                                                                           ------------------------------------------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) ----adh_short-3s55H06 H:8-187                                                                                                                                                           ------------------------------------------------------------------------------------------- Pfam domains (6)
           Pfam domains (7) ----adh_short-3s55H07 H:8-187                                                                                                                                                           ------------------------------------------------------------------------------------------- Pfam domains (7)
           Pfam domains (8) ----adh_short-3s55H08 H:8-187                                                                                                                                                           ------------------------------------------------------------------------------------------- Pfam domains (8)
         Sec.struct. author .....eeeee...hhhhhhhhhhhhhh..eeeeee.............hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee.........hhhhhhhhh.----..hhhhhhhhhh.........hhhhhhhhhhhhhhhhhh.....eeee..hhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s55 H   4 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRP----PTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGATARMI 278
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213   |   223       233       243       253       263       273     
                                                                                                                                                                                                                                               217  222
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3S55)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (B1MLR7_MYCA9 | B1MLR7)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

3oec SAME PROTEIN FROM MYCOBACTERIUM THERMORESISTIBLE WITHOUT NAD RELATED ID: MYABA.01326.F RELATED DB: TARGETDB