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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE GLYCOSIDE HYDROLASE (BVU_0247) FROM BACTEROIDES VULGATUS ATCC 8482 AT 2.46 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  17 May 11  (Deposition) - 08 Jun 11  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.46
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Galactose-Binding Domain-Like, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Glycoside Hydrolase (Bvu_0247) From Bacteroides Vulgatus Atcc 8482 At 2. 46 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL GLYCOSIDE HYDROLASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BVU_0247
    Organism Scientific: BACTEROIDES VULGATUS
    Organism Taxid: 435590
    Strain: ATCC 8482

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
2NA2Ligand/IonSODIUM ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2NA-1Ligand/IonSODIUM ION
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2NA-1Ligand/IonSODIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:133 , GLU A:135 , ASN A:193 , ASP A:371BINDING SITE FOR RESIDUE NA A 383
2AC2SOFTWAREASN B:133 , GLU B:135 , ASN B:193 , ASP B:371BINDING SITE FOR RESIDUE NA B 384

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3S30)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3S30)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3S30)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3S30)

(-) Exons   (0, 0)

(no "Exon" information available for 3S30)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:254
 aligned with A6KX05_BACV8 | A6KX05 from UniProtKB/TrEMBL  Length:382

    Alignment length:254
                                   134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374    
         A6KX05_BACV8   125 TKSIPTVFNFENVKTVPYNKNEYYVLYEAASGYSTLTWSSGNQGFALTGSGYTPNDFPTSISPNGRTGNCLQLITRKTGSLGTLVGMPIAAGNLFIGSFDIGSAMSDALSATKFGTTFYYEPIKLVGYYKYKAGPEFYENGESTNRKDVFNIYALFYEKTKDVQMLDGHIAKNNYEHENMVAAAVITDTHETSEWTRFELDFNYEHYGKTIDPQKLANGGYNVSIVLSASKDGDVFQGAPGSTLLIDDLELVCK 378
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee...eeeeeee..eeeeeeee.......ee...hhhhhhh.....hhhhh.eeee.......eeeee.ee.hhhhhhh...ee..eee.eee.......hhhhheee.ee....eeeeeeeeeee....eee..eee......eeeeeeee.......ee.hhhhh......eeeeee......eeeeeeeeee..........hhhhhhh..eeeeeeee...hhhhh......eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s30 A 125 TKSIPTVFNFENVKTVPYNKNEYYVLYEAASGYSTLTWSSGNQGFALTGSGYTPNDFPTSISPNGRTGNCLQLITRKTGSLGTLVGmPIAAGNLFIGSFDIGSAmSDALSATKFGTTFYYEPIKLVGYYKYKAGPEFYENGESTNRKDVFNIYALFYEKTKDVQmLDGHIAKNNYEHENmVAAAVITDTHETSEWTRFELDFNYEHYGKTIDPQKLANGGYNVSIVLSASKDGDVFQGAPGSTLLIDDLELVCK 378
                                   134       144       154       164       174       184       194       204      |214       224    |  234       244       254       264       274       284    |  294       304       314       324       334       344       354       364       374    
                                                                                                                211-MSE           229-MSE                                                     289-MSE        304-MSE                                                                      


Chain B from PDB  Type:PROTEIN  Length:256
 aligned with A6KX05_BACV8 | A6KX05 from UniProtKB/TrEMBL  Length:382

    Alignment length:256
                                   132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372      
         A6KX05_BACV8   123 PETKSIPTVFNFENVKTVPYNKNEYYVLYEAASGYSTLTWSSGNQGFALTGSGYTPNDFPTSISPNGRTGNCLQLITRKTGSLGTLVGMPIAAGNLFIGSFDIGSAMSDALSATKFGTTFYYEPIKLVGYYKYKAGPEFYENGESTNRKDVFNIYALFYEKTKDVQMLDGHIAKNNYEHENMVAAAVITDTHETSEWTRFELDFNYEHYGKTIDPQKLANGGYNVSIVLSASKDGDVFQGAPGSTLLIDDLELVCK 378
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Xylanase-3s30B01 B:123-376                                                                                                                                                                                                                                    -- Pfam domains (1)
           Pfam domains (2) Xylanase-3s30B02 B:123-376                                                                                                                                                                                                                                    -- Pfam domains (2)
         Sec.struct. author ........ee...eeeeeee..eeeeeeee.......ee...hhhhhhhh....hhhhh.eeee.......eeeee.ee..hhhhhh...ee..eee.eee.hhhh..hhhhheee.ee....eeeeeeeeeee....eee..eee......eeeeeeee.......ee.hhhh.......eeeeee......eeeeeeeeee..........hhhhhhh..eeeeeeee...hhhhh......eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s30 B 123 PETKSIPTVFNFENVKTVPYNKNEYYVLYEAASGYSTLTWSSGNQGFALTGSGYTPNDFPTSISPNGRTGNCLQLITRKTGSLGTLVGmPIAAGNLFIGSFDIGSAmSDALSATKFGTTFYYEPIKLVGYYKYKAGPEFYENGESTNRKDVFNIYALFYEKTKDVQmLDGHIAKNNYEHENmVAAAVITDTHETSEWTRFELDFNYEHYGKTIDPQKLANGGYNVSIVLSASKDGDVFQGAPGSTLLIDDLELVCK 378
                                   132       142       152       162       172       182       192       202       212       222      |232       242       252       262       272       282      |292       302 |     312       322       332       342       352       362       372      
                                                                                                                  211-MSE           229-MSE                                                     289-MSE        304-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3S30)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3S30)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: no clan defined [family: Xylanase] (1)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3S30)

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