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(-) Description

Title :  STRUCTURE OF AN ENCLOSED DIMER FORMED BY THE DROSOPHILA PERIOD PROTEIN
 
Authors :  H. A. King, A. Hoelz, B. R. Crane, M. W. Young
Date :  04 May 11  (Deposition) - 21 Dec 11  (Release) - 21 Dec 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Pas Domain, Signalling, Timeless, Circadian Clock Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. A. King, A. Hoelz, B. R. Crane, M. W. Young
Structure Of An Enclosed Dimer Formed By The Drosophila Period Protein.
J. Mol. Biol. V. 413 561 2011
PubMed-ID: 21907720  |  Reference-DOI: 10.1016/J.JMB.2011.08.048

(-) Compounds

Molecule 1 - PERIOD CIRCADIAN PROTEIN
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: CENTRAL FRAGMENT (UNP RESIDUES 236-574)
    Gene: PER, CG2647
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
    Synonym: PROTEIN CLOCK-6, CLK-6

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 28)

Asymmetric Unit (1, 28)
No.NameCountTypeFull Name
1DTT28Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1DTT8Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
Biological Unit 2 (1, 7)
No.NameCountTypeFull Name
1DTT7Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
Biological Unit 3 (1, 6)
No.NameCountTypeFull Name
1DTT6Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
Biological Unit 4 (1, 7)
No.NameCountTypeFull Name
1DTT7Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE

(-) Sites  (28, 28)

Asymmetric Unit (28, 28)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:310 , CYS A:312 , ARG A:339 , VAL A:404 , SER A:406 , VAL A:409BINDING SITE FOR RESIDUE DTT A 900
02AC2SOFTWARECYS A:455 , GLU A:472 , GLU A:474BINDING SITE FOR RESIDUE DTT A 901
03AC3SOFTWARECYS A:553 , GLN A:554 , ALA A:555 , ALA C:284BINDING SITE FOR RESIDUE DTT A 902
04AC4SOFTWARELYS A:378 , PRO A:380 , CYS A:502BINDING SITE FOR RESIDUE DTT A 903
05AC5SOFTWARETHR B:310 , CYS B:312 , VAL B:409 , PRO B:416BINDING SITE FOR RESIDUE DTT B 900
06AC6SOFTWARECYS B:455 , GLU B:472 , GLU B:474BINDING SITE FOR RESIDUE DTT B 901
07AC7SOFTWAREARG A:266 , CYS B:553 , LYS D:281 , ALA D:284 , THR D:285 , GLN D:417BINDING SITE FOR RESIDUE DTT B 902
08AC8SOFTWAREPRO B:380 , LYS B:500 , GLN B:501 , CYS B:502BINDING SITE FOR RESIDUE DTT B 903
09AC9SOFTWARETHR C:310 , CYS C:312 , ARG C:339 , SER C:406 , VAL C:409BINDING SITE FOR RESIDUE DTT C 900
10BC1SOFTWARECYS C:455 , GLU C:472 , GLU C:474 , ARG C:494BINDING SITE FOR RESIDUE DTT C 901
11BC2SOFTWARELYS A:281 , GLN A:417 , CYS C:553BINDING SITE FOR RESIDUE DTT C 902
12BC3SOFTWAREPRO C:380 , LYS C:500 , CYS C:502BINDING SITE FOR RESIDUE DTT C 903
13BC4SOFTWARETHR D:310 , CYS D:312 , ARG D:339 , SER D:406 , PRO D:416BINDING SITE FOR RESIDUE DTT D 900
14BC5SOFTWARECYS D:455 , GLU D:472BINDING SITE FOR RESIDUE DTT D 901
15BC6SOFTWARELYS B:281 , CYS D:553 , ALA D:555BINDING SITE FOR RESIDUE DTT D 902
16BC7SOFTWARETHR E:310 , PHE E:311 , CYS E:312 , ARG E:339 , SER E:406 , PRO E:416BINDING SITE FOR RESIDUE DTT E 900
17BC8SOFTWARECYS E:455 , GLU E:472 , GLU E:474BINDING SITE FOR RESIDUE DTT E 901
18BC9SOFTWARETHR F:310 , CYS F:312 , ARG F:339 , SER F:406 , VAL F:409 , PRO F:416BINDING SITE FOR RESIDUE DTT F 900
19CC1SOFTWARECYS F:455 , GLU F:472 , ARG F:494BINDING SITE FOR RESIDUE DTT F 901
20CC2SOFTWARECYS F:553 , GLN F:554 , LYS G:281 , GLN G:417BINDING SITE FOR RESIDUE DTT F 902
21CC3SOFTWAREPRO F:380 , LYS F:500 , GLN F:501 , CYS F:502BINDING SITE FOR RESIDUE DTT F 903
22CC4SOFTWARETHR G:310 , PHE G:311 , CYS G:312 , ARG G:339 , SER G:406BINDING SITE FOR RESIDUE DTT G 900
23CC5SOFTWARECYS G:455 , GLU G:472 , GLU G:474BINDING SITE FOR RESIDUE DTT G 901
24CC6SOFTWAREALA F:284 , ARG G:552 , CYS G:553 , GLN G:554 , ALA G:555BINDING SITE FOR RESIDUE DTT G 902
25CC7SOFTWARETHR H:310 , CYS H:312 , ARG H:339 , SER H:406 , PRO H:416BINDING SITE FOR RESIDUE DTT H 900
26CC8SOFTWARECYS H:455 , GLU H:472BINDING SITE FOR RESIDUE DTT H 901
27CC9SOFTWARELYS E:281 , ALA E:284 , THR E:285 , ARG G:266 , CYS H:553BINDING SITE FOR RESIDUE DTT H 902
28DC1SOFTWAREPRO H:380 , GLN H:501 , CYS H:502BINDING SITE FOR RESIDUE DTT H 903

(-) SS Bonds  (12, 12)

Asymmetric Unit
No.Residues
1A:241 -A:369
2B:241 -B:369
3B:467 -B:511
4D:241 -D:369
5E:241 -E:369
6E:467 -E:511
7F:241 -F:369
8F:467 -F:511
9G:241 -G:369
10G:467 -G:511
11H:241 -H:369
12H:467 -H:511

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3RTY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RTY)

(-) PROSITE Motifs  (1, 16)

Asymmetric Unit (1, 16)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PASPS50112 PAS repeat profile.PER_DROME248-297
 
 
 
 
 
 
 
399-447
 
 
 
 
 
 
 		  16A:248-296
B:248-294
C:248-294
D:248-296
E:248-296
F:248-294
G:248-296
H:248-294
A:399-447
B:399-447
C:399-447
D:399-447
E:399-447
F:399-447
G:399-447
H:399-447
Biological Unit 1 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PASPS50112 PAS repeat profile.PER_DROME248-297
 
 
 
 
 
 
 
399-447
 
 
 
 
 
 
 		  4A:248-296
B:248-294
-
-
-
-
-
-
A:399-447
B:399-447
-
-
-
-
-
-
Biological Unit 2 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PASPS50112 PAS repeat profile.PER_DROME248-297
 
 
 
 
 
 
 
399-447
 
 
 
 
 
 
 		  4-
-
C:248-294
D:248-296
-
-
-
-
-
-
C:399-447
D:399-447
-
-
-
-
Biological Unit 3 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PASPS50112 PAS repeat profile.PER_DROME248-297
 
 
 
 
 
 
 
399-447
 
 
 
 
 
 
 		  4-
-
-
-
E:248-296
F:248-294
-
-
-
-
-
-
E:399-447
F:399-447
-
-
Biological Unit 4 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PASPS50112 PAS repeat profile.PER_DROME248-297
 
 
 
 
 
 
 
399-447
 
 
 
 
 
 
 		  4-
-
-
-
-
-
G:248-296
H:248-294
-
-
-
-
-
-
G:399-447
H:399-447

(-) Exons   (0, 0)

(no "Exon" information available for 3RTY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:306
 aligned with PER_DROME | P07663 from UniProtKB/Swiss-Prot  Length:1224

    Alignment length:339
                                   245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565         
            PER_DROME   236 KEDSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGIPIAESRGSVPKDAKSTFCVMLRRYRGLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFEAAPTCKLKISEEAQSRNTRIKEDIVKRLAETVSRPSDTVKQEVSRRCQALASFMETLMDEVSRADLKL 574
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.....eeee..hhhhhhh.........hhhhhhhhhhhhhhhhhhhh....----------...eeeeeee...-------------..eeeeeeeeeeee....----------...eeeeeeeee.................eeeeeee....eeee..hhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...........eeee.....eeeeeeeeeeee......eeeeeeeeeeee.................hhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------PAS  PDB: A:248-296 UniProt: 248-297              -----------------------------------------------------------------------------------------------------PAS  PDB: A:399-447 UniProt: 399-447             ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rty A 236 KEDSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGIPI----------AKSTFCVMLRRYR-------------VSYEPFRLGLTFREAPEE----------GTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFEAAPTCKLKISEEAQSRNTRIKEDIVKRLAETVSRPSETVKQEVSRRCQALASFMETLMDEVSRADLKL 574
                                   245       255       265       275       285       295|        - |     315   |     -       335       345    |    -     | 365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565         
                                                                                      296        307         319           333              350        361                                                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:302
 aligned with PER_DROME | P07663 from UniProtKB/Swiss-Prot  Length:1224

    Alignment length:331
                                   245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565 
            PER_DROME   236 KEDSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGIPIAESRGSVPKDAKSTFCVMLRRYRGLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFEAAPTCKLKISEEAQSRNTRIKEDIVKRLAETVSRPSDTVKQEVSRRCQALASFMETLMDE 566
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.....eeee..hhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh------------.....eeeee...-------------..eeeeeeeeeeee..........----...eeeeeeeee.................eeeeeee....eeee...hhhhhh.hhhhhh..hhhhhh...hhhhhhhhhhhhhhhh......ee...eeee.....eeeeeeeeeeee......eeeeeeeeeeee.....................hhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------PAS  PDB: B:248-294 UniProt: 248-297              -----------------------------------------------------------------------------------------------------PAS  PDB: B:399-447 UniProt: 399-447             ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rty B 236 KEDSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGI------------AKSTFCVMLRRYR-------------VSYEPFRLGLTFREAPEEARPDNY----GTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFEAAPTCKLKISEEAQSRNTRIKEDIVKRLAETVSRPSETVKQEVSRRCQALASFMETLMDE 566
                                   245       255       265       275       285        |-         - |     315   |     -       335       345       355|    | 365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565 
                                                                                    294          307         319           333                    356  361                                                                                                                                                                                                             


Chain C from PDB  Type:PROTEIN  Length:302
 aligned with PER_DROME | P07663 from UniProtKB/Swiss-Prot  Length:1224

    Alignment length:331
                                   245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565 
            PER_DROME   236 KEDSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGIPIAESRGSVPKDAKSTFCVMLRRYRGLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFEAAPTCKLKISEEAQSRNTRIKEDIVKRLAETVSRPSDTVKQEVSRRCQALASFMETLMDE 566
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.....eeee..hhhhhhh.........hhhhhhhhhhhhhhhhhhhh..------------.....eeeee...-------------..eeeee..eeeee..........----...eeeeeeeee.................eeeeeee....eeee..hhhhhhh.hhhhhh..hhhhhh...hhhhhhhhhhhhhhhh......ee...eeee.....eeeeeeeeeeee......eeeeeeeeeeee.....................hhhhhhhhhhhhhhhh...........hhhhh.hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------PAS  PDB: C:248-294 UniProt: 248-297              -----------------------------------------------------------------------------------------------------PAS  PDB: C:399-447 UniProt: 399-447             ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rty C 236 KEDSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGI------------AKSTFCVMLRRYR-------------VSYEPFRLGLTFREAPEEARPDNY----GTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFEAAPTCKLKISEEAQSRNTRIKEDIVKRLAETVSRPSETVKQEVSRRCQALASFMETLMDE 566
                                   245       255       265       275       285        |-         - |     315   |     -       335       345       355|    | 365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565 
                                                                                    294          307         319           333                    356  361                                                                                                                                                                                                             


Chain D from PDB  Type:PROTEIN  Length:306
 aligned with PER_DROME | P07663 from UniProtKB/Swiss-Prot  Length:1224

    Alignment length:339
                                   245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565         
            PER_DROME   236 KEDSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGIPIAESRGSVPKDAKSTFCVMLRRYRGLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFEAAPTCKLKISEEAQSRNTRIKEDIVKRLAETVSRPSDTVKQEVSRRCQALASFMETLMDEVSRADLKL 574
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.....eeee..hhhhhh..........hhhhhhhhhhhhhhhhhhhh....----------...eeeeeee...-------------..eeeeeeeeeeee....----------...eeeeeeeee.................eeeeeee....eeee..hhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh......ee...eeee.....eeee..eeeeee......eeeeeeeeeeee...................hhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------PAS  PDB: D:248-296 UniProt: 248-297              -----------------------------------------------------------------------------------------------------PAS  PDB: D:399-447 UniProt: 399-447             ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rty D 236 KEDSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGIPI----------AKSTFCVMLRRYR-------------VSYEPFRLGLTFREAPEE----------GTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFEAAPTCKLKISEEAQSRNTRIKEDIVKRLAETVSRPSETVKQEVSRRCQALASFMETLMDEVSRADLKL 574
                                   245       255       265       275       285       295|        - |     315   |     -       335       345    |    -     | 365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565         
                                                                                      296        307         319           333              350        361                                                                                                                                                                                                                     


Chain E from PDB  Type:PROTEIN  Length:307
 aligned with PER_DROME | P07663 from UniProtKB/Swiss-Prot  Length:1224

    Alignment length:339
                                   245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565         
            PER_DROME   236 KEDSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGIPIAESRGSVPKDAKSTFCVMLRRYRGLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFEAAPTCKLKISEEAQSRNTRIKEDIVKRLAETVSRPSDTVKQEVSRRCQALASFMETLMDEVSRADLKL 574
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.....eeee..hhhhhh..........hhhhhhhhhhhhhhhhhhhh....----------...eeeeeee...------------...eeeeeeeeeeee....----------...eeeeeeeee.................eeeeeee....eeee..hhhhhhh.hhhhhh..hhhhhh...hhhhhhhhhhhhhhhhhh....ee...eeee.....eeee..eeeeee......eeeeeeeeeeee.................hhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------PAS  PDB: E:248-296 UniProt: 248-297              -----------------------------------------------------------------------------------------------------PAS  PDB: E:399-447 UniProt: 399-447             ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rty E 236 KEDSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGIPI----------AKSTFCVMLRRYR------------PVSYEPFRLGLTFREAPEE----------GTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFEAAPTCKLKISEEAQSRNTRIKEDIVKRLAETVSRPSETVKQEVSRRCQALASFMETLMDEVSRADLKL 574
                                   245       255       265       275       285       295|        - |     315   |     -      |335       345    |    -     | 365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565         
                                                                                      296        307         319          332               350        361                                                                                                                                                                                                                     


Chain F from PDB  Type:PROTEIN  Length:302
 aligned with PER_DROME | P07663 from UniProtKB/Swiss-Prot  Length:1224

    Alignment length:331
                                   245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565 
            PER_DROME   236 KEDSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGIPIAESRGSVPKDAKSTFCVMLRRYRGLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFEAAPTCKLKISEEAQSRNTRIKEDIVKRLAETVSRPSDTVKQEVSRRCQALASFMETLMDE 566
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.....eeee..hhhhhhh.........hhhhhhhhhhhhhhhhhhhh..------------...eeeeeee...-------------..eeeeeee..eee..........----...eeeeeeeee.................eeeeeee....eeee..hhhhhhh.........hhhhhh...hhhhhhhhhhhhhhh.......ee...eeee.....eeeeeeeeeeee......eeeeeeeeeeee.....................hhhhhhhhhhhhhhhhh..........hhhhh.hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------PAS  PDB: F:248-294 UniProt: 248-297              -----------------------------------------------------------------------------------------------------PAS  PDB: F:399-447 UniProt: 399-447             ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rty F 236 KEDSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGI------------AKSTFCVMLRRYR-------------VSYEPFRLGLTFREAPEEARPDNY----GTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFEAAPTCKLKISEEAQSRNTRIKEDIVKRLAETVSRPSETVKQEVSRRCQALASFMETLMDE 566
                                   245       255       265       275       285        |-         - |     315   |     -       335       345       355|    | 365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565 
                                                                                    294          307         319           333                    356  361                                                                                                                                                                                                             


Chain G from PDB  Type:PROTEIN  Length:306
 aligned with PER_DROME | P07663 from UniProtKB/Swiss-Prot  Length:1224

    Alignment length:339
                                   245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565         
            PER_DROME   236 KEDSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGIPIAESRGSVPKDAKSTFCVMLRRYRGLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFEAAPTCKLKISEEAQSRNTRIKEDIVKRLAETVSRPSDTVKQEVSRRCQALASFMETLMDEVSRADLKL 574
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.....eeee..hhhhhh..........hhhhhhhhhhhhhhhhhhhh....----------...eeeeeee...-------------..eeeeeeeeeeee....----------...eeeeeeeee.................eeeeeee....eeee..hhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...........eeee.....eeeeeeeeeeee......eeeeeeeeeeee.................hhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------PAS  PDB: G:248-296 UniProt: 248-297              -----------------------------------------------------------------------------------------------------PAS  PDB: G:399-447 UniProt: 399-447             ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rty G 236 KEDSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGIPI----------AKSTFCVMLRRYR-------------VSYEPFRLGLTFREAPEE----------GTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFEAAPTCKLKISEEAQSRNTRIKEDIVKRLAETVSRPSETVKQEVSRRCQALASFMETLMDEVSRADLKL 574
                                   245       255       265       275       285       295|        - |     315   |     -       335       345    |    -     | 365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565         
                                                                                      296        307         319           333              350        361                                                                                                                                                                                                                     


Chain H from PDB  Type:PROTEIN  Length:302
 aligned with PER_DROME | P07663 from UniProtKB/Swiss-Prot  Length:1224

    Alignment length:331
                                   245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565 
            PER_DROME   236 KEDSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGIPIAESRGSVPKDAKSTFCVMLRRYRGLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFEAAPTCKLKISEEAQSRNTRIKEDIVKRLAETVSRPSDTVKQEVSRRCQALASFMETLMDE 566
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.....eeee..hhhhhh..........hhhhhhhhhhhhhhhhhhhh..------------...eeeeeee...-------------..eeeeeeeeeeee..........----...eeeeeeeee.................eeeeeee....eeee..hhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...........eeee.....eeeeeeeeeeee......eeeeeeeeeeee.....................hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------PAS  PDB: H:248-294 UniProt: 248-297              -----------------------------------------------------------------------------------------------------PAS  PDB: H:399-447 UniProt: 399-447             ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rty H 236 KEDSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGI------------AKSTFCVMLRRYR-------------VSYEPFRLGLTFREAPEEARPDNY----GTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFEAAPTCKLKISEEAQSRNTRIKEDIVKRLAETVSRPSETVKQEVSRRCQALASFMETLMDE 566
                                   245       255       265       275       285        |-         - |     315   |     -       335       345       355|    | 365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565 
                                                                                    294          307         319           333                    356  361
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3RTY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RTY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3RTY)

(-) Gene Ontology  (39, 39)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (PER_DROME | P07663)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046982    protein heterodimerization activity    Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0003712    transcription cofactor activity    Interacting selectively and non-covalently with a regulatory transcription factor and also with the basal transcription machinery in order to modulate transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between regulatory transcription factors and the basal transcription machinery.
    GO:0003714    transcription corepressor activity    Interacting selectively and non-covalently with a repressing transcription factor and also with the basal transcription machinery in order to stop, prevent, or reduce the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between repressive transcription factors and the basal transcription machinery.
    GO:0008134    transcription factor binding    Interacting selectively and non-covalently with a transcription factor, any protein required to initiate or regulate transcription.
biological process
    GO:0001306    age-dependent response to oxidative stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, where the change varies according to the age of the cell or organism.
    GO:0048148    behavioral response to cocaine    Any process that results in a change in the behavior of an organism as a result of a cocaine stimulus.
    GO:0048512    circadian behavior    The specific behavior of an organism that recurs with a regularity of approximately 24 hours.
    GO:0007623    circadian rhythm    Any biological process in an organism that recurs with a regularity of approximately 24 hours.
    GO:0042745    circadian sleep/wake cycle    The cycle from wakefulness through an orderly succession of sleep states and stages that occurs on an approximately 24 hour rhythm.
    GO:0060086    circadian temperature homeostasis    Any homeostatic process in which an organism modulates its internal body temperature at different values with a regularity of approximately 24 hours.
    GO:0007620    copulation    The act of sexual union between male and female, involving the transfer of sperm.
    GO:0007619    courtship behavior    The behavioral interactions between organisms for the purpose of attracting sexual partners.
    GO:0008340    determination of adult lifespan    The control of viability and duration in the adult phase of the life-cycle.
    GO:0008062    eclosion rhythm    The timing of the emergence of the adult fly from its pupal case, which usually occurs at dawn.
    GO:0009649    entrainment of circadian clock    The synchronization of a circadian rhythm to environmental time cues such as light.
    GO:0043153    entrainment of circadian clock by photoperiod    The synchronization of a circadian rhythm to photoperiod, the intermittent cycle of light (day) and dark (night).
    GO:0045475    locomotor rhythm    The rhythm of the locomotor activity of an organism during its 24 hour activity cycle.
    GO:0007616    long-term memory    The memory process that deals with the storage, retrieval and modification of information a long time (typically weeks, months or years) after receiving that information. This type of memory is typically dependent on gene transcription regulated by second messenger activation.
    GO:0045433    male courtship behavior, veined wing generated song production    The process during wing vibration where the male insect produces a species-specific acoustic signal called a love song.
    GO:0007617    mating behavior    The behavioral interactions between organisms for the purpose of mating, or sexual reproduction resulting in the formation of zygotes.
    GO:0000122    negative regulation of transcription from RNA polymerase II promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:2000678    negative regulation of transcription regulatory region DNA binding    Any process that stops, prevents or reduces the frequency, rate or extent of transcription regulatory region DNA binding.
    GO:0045892    negative regulation of transcription, DNA-templated    Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0042752    regulation of circadian rhythm    Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours.
    GO:0045187    regulation of circadian sleep/wake cycle, sleep    Any process that modulates the frequency, rate or extent of sleep; a readily reversible state of reduced awareness and metabolic activity that occurs periodically in many animals.
    GO:1904059    regulation of locomotor rhythm    Any process that modulates the frequency, rate or extent of locomotor rhythm.
    GO:0001932    regulation of protein phosphorylation    Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0009416    response to light stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
    GO:0006979    response to oxidative stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
    GO:0009266    response to temperature stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus.
    GO:0007622    rhythmic behavior    The specific behavior of an organism that recur with measured regularity.
    GO:0048511    rhythmic process    Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism.
    GO:0007624    ultradian rhythm    The specific actions or reactions of an organism that recur with a regularity more frequent than every 24 hours.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0048471    perinuclear region of cytoplasm    Cytoplasm situated near, or occurring around, the nucleus.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PER_DROME | P07663: 1wa9 3gec

(-) Related Entries Specified in the PDB File

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