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(-) Description

Title :  CRYSTAL STRUCTURE OF GLYOXALASE/BLEOMYCIN RESISTANCE PROTEIN/DIOXYGENASE FROM ALICYCLOBACILLUS ACIDOCALDARIUS
 
Authors :  K. Michalska, N. Marshall, S. Clancy, A. Joachimiak, Midwest Center Structural Genomics (Mcsg)
Date :  29 Apr 11  (Deposition) - 10 Aug 11  (Release) - 10 Aug 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (4x)
Biol. Unit 2:  A,B  (1x)
Keywords :  Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Metalloprotein, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Michalska, N. Marshall, S. Clancy, A. Joachimiak
Crystal Structure Of Glyoxalase/Bleomycin Resistance Protein/Dioxygenase From Alicyclobacillus Acidocaldarius
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLYOXALASE/BLEOMYCIN RESISTANCE PROTEIN/DIOXYGENASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21 MAGIC
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: AACI_2434
    Organism Scientific: ALICYCLOBACILLUS ACIDOCALDARIUS SUBSP. ACIDOCALDARIUS
    Organism Taxid: 521098
    Strain: DSM 446

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (4x): AB
Biological Unit 2 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 40)
No.NameCountTypeFull Name
1ACT8Ligand/IonACETATE ION
2MSE32Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 10)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:34 , ARG A:39 , HOH A:197 , PHE B:100 , HIS B:107 , LYS B:123 , TYR B:125BINDING SITE FOR RESIDUE ACT A 133
2AC2SOFTWAREPHE A:100 , HIS A:107 , LYS A:123 , TYR A:125 , ARG B:34 , ARG B:39BINDING SITE FOR RESIDUE ACT A 134

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RRI)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Tyr A:64 -Pro A:65
2Tyr B:64 -Pro B:65

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RRI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3RRI)

(-) Exons   (0, 0)

(no "Exon" information available for 3RRI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:132
 aligned with C8WSF5_ALIAD | C8WSF5 from UniProtKB/TrEMBL  Length:132

    Alignment length:132
                                    10        20        30        40        50        60        70        80        90       100       110       120       130  
         C8WSF5_ALIAD     1 MRNPNDVFHLAIPARDLDEAYDFYVTKLGCKLARRYPDRITLDFFGDQLVCHLSDRWDREVSMYPRHFGITFRDKKHFDNLYKLAKQRGIPFYHDLSRRFEGLIEEHETFFLIDPSNNLLEFKYYFDDRMMY 132
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeeeee.hhhhhhhhhh.....eeeeee..eeeeee..eeeeeee.............eeeee..hhhhhhhhhhhhhhh...eeeeeeee.......eeeeeee.....eeeeeee.hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3rri A   1 mRNPNDVFHLAIPARDLDEAYDFYVTKLGCKLARRYPDRITLDFFGDQLVCHLSDRWDREVSmYPRHFGITFRDKKHFDNLYKLAKQRGIPFYHDLSRRFEGLIEEHETFFLIDPSNNLLEFKYYFDDRmmY 132
                            |       10        20        30        40        50        60  |     70        80        90       100       110       120       130| 
                            |                                                            63-MSE                                                            130-MSE
                            1-MSE                                                                                                                           131-MSE


Chain B from PDB  Type:PROTEIN  Length:132
 aligned with C8WSF5_ALIAD | C8WSF5 from UniProtKB/TrEMBL  Length:132

    Alignment length:132
                                    10        20        30        40        50        60        70        80        90       100       110       120       130  
         C8WSF5_ALIAD     1 MRNPNDVFHLAIPARDLDEAYDFYVTKLGCKLARRYPDRITLDFFGDQLVCHLSDRWDREVSMYPRHFGITFRDKKHFDNLYKLAKQRGIPFYHDLSRRFEGLIEEHETFFLIDPSNNLLEFKYYFDDRMMY 132
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeeeee.hhhhhhhhhh.....eeeee...eeeeee..eeeeeee.............eeeee..hhhhhhhhhhhhhhh...eeeeeeee.......eeeeeee.....eeeeeee.hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3rri B   1 mRNPNDVFHLAIPARDLDEAYDFYVTKLGCKLARRYPDRITLDFFGDQLVCHLSDRWDREVSmYPRHFGITFRDKKHFDNLYKLAKQRGIPFYHDLSRRFEGLIEEHETFFLIDPSNNLLEFKYYFDDRmmY 132
                            |       10        20        30        40        50        60  |     70        80        90       100       110       120       130| 
                            |                                                            63-MSE                                                            130-MSE
                            1-MSE                                                                                                                           131-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3RRI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RRI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3RRI)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (C8WSF5_ALIAD | C8WSF5)
molecular function
    GO:0051213    dioxygenase activity    Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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