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(-) Description

Title :  STRUCTURE OF A PUTATIVE UNCHARACTERIZED PROTEIN FROM MYCOBACTERIUM ABSCESSUS ATCC 19977 / DSM 44196
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  29 Apr 11  (Deposition) - 11 May 11  (Release) - 22 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.58
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Baugh, I. Phan, D. W. Begley, M. C. Clifton, B. Armour, D. M. Dranow, B. M. Taylor, M. M. Muruthi, J. Abendroth, J. W. Fairman, D. Fox, S. H. Dieterich, B. L. Staker, A. S. Gardberg, R. Choi, S. N. Hewitt, A. J. Napuli, J. Myers, L. K. Barrett, Y. Zhang, M. Ferrell, E. Mundt, K. Thompkins, N. Tran, S. Lyons-Abbott, A. Abramov, A. Sekar, D. Serbzhinskiy, D. Lorimer, G. W. Buchko, R. Stacy, L. J. Stewart, T. E. Edwards, W. C. Van Voorhis, P. J. Myler
Increasing The Structural Coverage Of Tuberculosis Drug Targets.
Tuberculosis (Edinb) V. 95 142 2015
PubMed-ID: 25613812  |  Reference-DOI: 10.1016/J.TUBE.2014.12.003

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MAB_3299C
    Organism Scientific: MYCOBACTERIUM ABSCESSUS
    Organism Taxid: 561007
    Strain: ATCC 19977 / DSM 44196

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 16)

Asymmetric/Biological Unit (3, 16)
No.NameCountTypeFull Name
1EDO13Ligand/Ion1,2-ETHANEDIOL
2PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
3UNX1Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:140 , PRO A:180 , GLY A:207 , HOH A:298 , HOH A:447BINDING SITE FOR RESIDUE EDO A 262
02AC2SOFTWAREPRO A:172 , TRP A:173 , GLY A:250 , THR A:251 , HOH A:286 , HOH A:363 , HOH A:383BINDING SITE FOR RESIDUE EDO A 263
03AC3SOFTWARETHR A:93 , THR A:218 , HOH A:436BINDING SITE FOR RESIDUE EDO A 264
04AC4SOFTWARESER A:107 , HIS A:151 , ARG A:160 , HIS A:164 , VAL A:216 , HOH A:479BINDING SITE FOR RESIDUE EDO A 265
05AC5SOFTWAREASN A:190 , GLY A:239 , ASP A:240 , THR A:241 , PRO A:255 , VAL A:256 , VAL A:257 , HOH A:593BINDING SITE FOR RESIDUE PEG A 266
06AC6SOFTWAREARG A:123 , ALA A:134 , GLU A:135 , ASN A:136 , ILE A:137 , HOH A:385BINDING SITE FOR RESIDUE EDO A 267
07AC7SOFTWAREPRO A:82 , SER A:84 , PRO A:85 , HIS A:204 , HOH A:339 , HOH A:353BINDING SITE FOR RESIDUE EDO A 268
08AC8SOFTWARECYS A:125 , LYS A:126 , ASP A:127 , VAL A:128 , HOH A:399 , HOH A:440 , HOH A:473BINDING SITE FOR RESIDUE EDO A 269
09AC9SOFTWAREARG A:196 , HOH A:503 , HOH A:515 , HOH A:524BINDING SITE FOR RESIDUE EDO A 270
10BC1SOFTWAREILE A:32 , ALA A:33 , EDO A:276 , HOH A:443BINDING SITE FOR RESIDUE EDO A 272
11BC2SOFTWAREMET A:77 , LEU A:203 , HOH A:319BINDING SITE FOR RESIDUE EDO A 273
12BC3SOFTWAREALA A:130 , ASP A:205 , GLY A:207 , ALA A:208 , HOH A:298 , HOH A:596BINDING SITE FOR RESIDUE PEG A 274
13BC4SOFTWARELYS A:68 , ASN A:69 , TYR A:70 , THR A:229 , PRO A:230 , HOH A:432 , HOH A:468 , HOH A:561BINDING SITE FOR RESIDUE EDO A 275
14BC5SOFTWAREPHE A:14 , ILE A:58 , LEU A:59 , EDO A:272 , HOH A:295 , HOH A:424BINDING SITE FOR RESIDUE EDO A 276
15BC6SOFTWAREARG A:196 , HOH A:350 , HOH A:397 , HOH A:417 , HOH A:536BINDING SITE FOR RESIDUE EDO A 277

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RR6)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:171 -Pro A:172
2Arg A:258 -Lys A:259

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RR6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3RR6)

(-) Exons   (0, 0)

(no "Exon" information available for 3RR6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:252
 aligned with B1MDQ6_MYCA9 | B1MDQ6 from UniProtKB/TrEMBL  Length:261

    Alignment length:259
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250         
         B1MDQ6_MYCA9     1 MRLGRIASPDGVAFVSIEGEDGREESAIAREIAEHPFGTPTFTGRQWPLADVRLLAPILASKVVAMGKNYAAHAAEMGGDPPESPVIFIKPNTSIIGPGLPIQLPPSATEVHHEGELAIVIGRPCKDVPAARAAENILGYTIGNDVSARDHQRADGQWTRAKGHDTFCPLGPWIVTDLDPADLEIRTEVNGQVRQRSRTSLLLHDVGAIVEWVSAVMTLLPGDVILTGTPEGVGPIVDGDTVSVTIEGIGTLSNPVVRK 259
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains DUF2437-3rr6A02 A:1       -57                            ----FAA_hydrolase-3rr6A01 A:62-257                                                                                                                                                                      -- Pfam domains
         Sec.struct. author .eeeeeee..eeeeeeee.-------.eeeee.........eeeeeee.hhhee........eeee......hhhhh.........eeeehhh.ee.....ee.......eee.eeeeeee.......hhhhhhh.eeeeeeee..eehhhhhhhh.hhhhhhh...eeeeeeee...hhhh.eeeeee..eeeeeee.hhh..hhhhhhhhhhhhh......eee.......ee.....eeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rr6 A   1 MRLGRIASPDGVAFVSIEG-------AIAREIAEHPFGTPTFTGRQWPLADVRLLAPILASKVVAMGKNYAAHAAEMGGDPPESPVIFIKPNTSIIGPGLPIQLPPSATEVHHEGELAIVIGRPCKDVPAARAAENILGYTIGNDVSARDHQRADGQWTRAKGHDTFCPLGPWIVTDLDPADLEIRTEVNGQVRQRSRTSLLLHDVGAIVEWVSAVMTLLPGDVILTGTPEGVGPIVDGDTVSVTIEGIGTLSNPVVRK 259
                                    10        |-      | 30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250         
                                             19      27
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3RR6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RR6)

(-) Pfam Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Clan: FAH (11)
(-)
Clan: no clan defined [family: DUF2437] (2)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (B1MDQ6_MYCA9 | B1MDQ6)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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  Cis Peptide Bonds
    Arg A:258 - Lys A:259   [ RasMol ]  
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