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(-) Description

Title :  THE CRYSTAL STRUCTURE OF A PATHOGENIC PROTEIN FROM THE XANTHOMONAS CAMPESTRIS REVEALS A NEW TETRAMERIC PILZ DOMAIN SELF-ASSEMBLED VIA A UNUSUAL HELICAL BUNDLE
 
Authors :  T. -N. Li, K. -H. Chin, S. -H. Chou
Date :  28 Apr 11  (Deposition) - 14 Mar 12  (Release) - 14 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Pilz Domain, Tetrameric Parallel Coiled-Coil, Four Helix Bundle, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. -N. Li, K. -H. Chin, K. -M. Fung, M. -T. Yang, A. H. -J. Wang, S. -H. Chou
A Novel Tetrameric Pilz Domain Structure From Xanthomonads
Plos One V. 6 22036 2011
PubMed-ID: 21760949  |  Reference-DOI: 10.1371/JOURNAL.PONE.0022036

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: XCC-B100_2234
    Organism Scientific: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS
    Organism Taxid: 509169
    Strain: B100
    Synonym: PILZ PROTEIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:38 , ALA A:40 , THR A:41 , TRP D:131BINDING SITE FOR RESIDUE ACT A 1001
2AC2SOFTWARETRP A:131 , SER B:38 , ALA B:40 , THR B:41BINDING SITE FOR RESIDUE ACT A 1003
3AC3SOFTWAREHOH B:367BINDING SITE FOR RESIDUE ACT B 1004
4AC4SOFTWARETRP C:131 , THR D:41BINDING SITE FOR RESIDUE ACT C 1002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RQA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3RQA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RQA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3RQA)

(-) Exons   (0, 0)

(no "Exon" information available for 3RQA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:175
 aligned with B0RT03_XANCB | B0RT03 from UniProtKB/TrEMBL  Length:188

    Alignment length:180
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183
         B0RT03_XANCB     4 LGTLAPAADTELFADTLSCELRLPAGFHVTADPGSHATAETLLRSLGQVEDLRSEDSSEERGELPLLVQRMDAKLDLILALIGRLVRQSDTRLALGTVHWSVRGIRLASPHAHPPGTTGSVLLQPSDWLPELLQLPADVLASASDGQQHWLWLRFAPLGTGLQDALERHLFRLHRRQIAD 183
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhh....eeeeeeeeee......hhhhhhhhhhhhhhhhhhh-----......hhhhhhhhhhhhhhhhhhhhhhhh......eeeeee...eeeeee........eeeeee.........eeeeeeeeeeee....eeeeeee...hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3rqa A   4 LGTLAPAADTELFADTLSCELRLPAGFHVTADPGSHATAETLLRSLGQVEDLR-----EERGELPLLVQRMDAKLDLILALIGRLVRQSDTRLALGTVHWSVRGIRLASPHAHPPGTTGSVLLQPSDWLPELLQLPADVLASASDGQQHWLWLRFAPLGTGLQDALERHLFRLHRRQIAD 183
                                    13        23        33        43        53  |     63        73        83        93       103       113       123       133       143       153       163       173       183
                                                                               56    62                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:168
 aligned with B0RT03_XANCB | B0RT03 from UniProtKB/TrEMBL  Length:188

    Alignment length:179
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173         
         B0RT03_XANCB     4 LGTLAPAADTELFADTLSCELRLPAGFHVTADPGSHATAETLLRSLGQVEDLRSEDSSEERGELPLLVQRMDAKLDLILALIGRLVRQSDTRLALGTVHWSVRGIRLASPHAHPPGTTGSVLLQPSDWLPELLQLPADVLASASDGQQHWLWLRFAPLGTGLQDALERHLFRLHRRQIA 182
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhh...eeeee..eeeee.....hhhhhhhhhhhhhhh..-----------..hhhhhhhhhhhhhhhhhhhhhhhh........eeeee..eeeeee........eeeeee.........eeeeeeeee.......eeeeeee...hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rqa B   4 LGTLAPAADTELFADTLSCELRLPAGFHVTADPGSHATAETLLRSLGQVED-----------ELPLLVQRMDAKLDLILALIGRLVRQSDTRLALGTVHWSVRGIRLASPHAHPPGTTGSVLLQPSDWLPELLQLPADVLASASDGQQHWLWLRFAPLGTGLQDALERHLFRLHRRQIA 182
                                    13        23        33        43        53|        -  |     73        83        93       103       113       123       133       143       153       163       173         
                                                                             54          66                                                                                                                    


Chain C from PDB  Type:PROTEIN  Length:179
 aligned with B0RT03_XANCB | B0RT03 from UniProtKB/TrEMBL  Length:188

    Alignment length:185
                             1                                                                                                                                                                                       
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179     
         B0RT03_XANCB     - -MSTLGTLAPAADTELFADTLSCELRLPAGFHVTADPGSHATAETLLRSLGQVEDLRSEDSSEERGELPLLVQRMDAKLDLILALIGRLVRQSDTRLALGTVHWSVRGIRLASPHAHPPGTTGSVLLQPSDWLPELLQLPADVLASASDGQQHWLWLRFAPLGTGLQDALERHLFRLHRRQIADA 184
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh...eeeeeeeeeee......hhhhhhhhhhhhhhhh..------.......hhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeee..eeeeee........eeeeee.........eeeeeeeeeeee....eeeeeee..hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rqa C   0 AMSTLGTLAPAADTELFADTLSCELRLPAGFHVTADPGSHATAETLLRSLGQVEDL------EERGELPLLVQRMDAKLDLILALIGRLVRQSDTRLALGTVHWSVRGIRLASPHAHPPGTTGSVLLQPSDWLPELLQLPADVLASASDGQQHWLWLRFAPLGTGLQDALERHLFRLHRRQIADA 184
                                     9        19        29        39        49     |   -  |     69        79        89        99       109       119       129       139       149       159       169       179     
                                                                                  55     62                                                                                                                          


Chain D from PDB  Type:PROTEIN  Length:169
 aligned with B0RT03_XANCB | B0RT03 from UniProtKB/TrEMBL  Length:188

    Alignment length:182
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181  
         B0RT03_XANCB     2 STLGTLAPAADTELFADTLSCELRLPAGFHVTADPGSHATAETLLRSLGQVEDLRSEDSSEERGELPLLVQRMDAKLDLILALIGRLVRQSDTRLALGTVHWSVRGIRLASPHAHPPGTTGSVLLQPSDWLPELLQLPADVLASASDGQQHWLWLRFAPLGTGLQDALERHLFRLHRRQIAD 183
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh...eeeeeeeeeee......hhhhhhhhhhhhhhhh.-------------hhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee..eeeeee........eeeeee.........eeeeeeeeeeee....eeeeeee...hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rqa D   2 STLGTLAPAADTELFADTLSCELRLPAGFHVTADPGSHATAETLLRSLGQVED-------------PLLVQRMDAKLDLILALIGRLVRQSDTRLALGTVHWSVRGIRLASPHAHPPGTTGSVLLQPSDWLPELLQLPADVLASASDGQQHWLWLRFAPLGTGLQDALERHLFRLHRRQIAD 183
                                    11        21        31        41        51  |      -      | 71        81        91       101       111       121       131       141       151       161       171       181  
                                                                               54            68
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3RQA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RQA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3RQA)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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