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(-) Description

Title :  CRYSTAL STRUCTURE OF STAGE II SPORULATION E FAMILY PROTEIN FROM THERMANAEROVIBRIO ACIDAMINOVORANS
 
Authors :  Y. Kim, H. Li, S. Clancy, A. Joachimiak, Midwest Center For Structur Genomics (Mcsg)
Date :  22 Apr 11  (Deposition) - 29 Jun 11  (Release) - 29 Jun 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Alpha-Beta-Alpha Sandwich, Phosphatase, Cytosol, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, H. Li, S. Clancy, A. Joachimiak
Crystal Structure Of Stage Ii Sporulation E Family Protein From Thermanaerovibrio Acidaminovorans
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - STAGE II SPORULATION E FAMILY PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21 MAGIC
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: TACI_1699
    Organism Scientific: THERMANAEROVIBRIO ACIDAMINOVORANS
    Organism Taxid: 525903
    Strain: DSM 6589

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 27)

Asymmetric/Biological Unit (4, 27)
No.NameCountTypeFull Name
1ACY1Ligand/IonACETIC ACID
2EDO2Ligand/Ion1,2-ETHANEDIOL
3GOL12Ligand/IonGLYCEROL
4MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:77 , THR A:82 , GLU A:84 , PRO A:148 , HOH A:264 , HOH A:274 , HOH A:339BINDING SITE FOR RESIDUE GOL A 211
02AC2SOFTWAREASP A:14 , GLY A:15 , GLY A:17 , THR A:70 , ASP A:90 , GOL A:214 , HOH A:287BINDING SITE FOR RESIDUE GOL A 212
03AC3SOFTWAREALA A:52 , ARG A:56 , HOH A:270 , HOH A:272 , HOH A:279BINDING SITE FOR RESIDUE ACY A 213
04AC4SOFTWAREGLU A:128 , MSE A:129 , ILE A:130 , GOL A:212 , HOH A:319BINDING SITE FOR RESIDUE GOL A 214
05AC5SOFTWAREASP A:80BINDING SITE FOR RESIDUE EDO A 215
06AC6SOFTWARESER A:31 , HOH A:257 , HOH A:282 , HOH B:299BINDING SITE FOR RESIDUE GOL A 216
07AC7SOFTWAREARG A:79 , GLY A:81 , LEU A:151 , HOH A:321BINDING SITE FOR RESIDUE GOL A 217
08AC8SOFTWAREGLY A:5 , SER B:-2 , ASP B:14 , GLY B:15 , ASP B:23 , ALA B:26 , SER B:167 , HIS B:169 , HOH B:267BINDING SITE FOR RESIDUE GOL B 211
09AC9SOFTWARELYS B:7 , ASN B:77 , THR B:82 , GLU B:84 , HOH B:342BINDING SITE FOR RESIDUE GOL B 212
10BC1SOFTWAREGLU B:24 , GLN B:27 , ARG B:28 , PRO B:121 , HOH B:280 , HOH B:345BINDING SITE FOR RESIDUE GOL B 213
11BC2SOFTWAREGLN A:60 , GLY B:18 , GLU B:128 , MSE B:129 , ILE B:130 , HOH B:270BINDING SITE FOR RESIDUE GOL B 214
12BC3SOFTWAREGLY B:62 , LEU B:101 , GLY B:194 , GOL B:217 , HOH B:352BINDING SITE FOR RESIDUE GOL B 215
13BC4SOFTWARELEU A:116 , LYS B:97 , ARG B:100 , SER B:102BINDING SITE FOR RESIDUE GOL B 216
14BC5SOFTWARELEU B:101 , VAL B:190 , GLU B:191 , ALA B:192 , ARG B:195 , PRO B:196 , GOL B:215BINDING SITE FOR RESIDUE GOL B 217
15BC6SOFTWAREASP B:171 , ARG B:172 , HOH B:360BINDING SITE FOR RESIDUE EDO B 218

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RNR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3RNR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RNR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3RNR)

(-) Exons   (0, 0)

(no "Exon" information available for 3RNR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:206
 aligned with D1B7C2_THEAS | D1B7C2 from UniProtKB/TrEMBL  Length:208

    Alignment length:211
                               1                                                                                                                                                                                                               
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207 
         D1B7C2_THEAS     - ---MGTGGDKAYCVVVDGMGGMIRGDEAAQRALSASVGVLDAGGSPLDAVLAAQAAVHRWASQGGILGRTGATMAVAAVNLRDGTLEWASVGDCRVYLFKGGRLSRLSLDHNVSSEMVLLGRGPVPGPAGEMITSFIGIENLTEISTSEAPLPLEAGEGVLVVSDGVYRSLHEDRIAMALSRGSDARGILQEVEAQGRPYQDNATLALVIL 208
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..eeeeeeeee.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.......eeeeeeeee....eeeeeee...eeeeee..eeee.....hhhhhhhhh......hhhhhh.............ee....ee.....eeeeee.-----....eeeeee....hhhhhhhhhhhh........eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rnr A  -2 SNAVGTGGDKAYCVVVDGmGGmIRGDEAAQRALSASVGVLDAGGSPLDAVLAAQAAVHRWASQGGILGRTGATmAVAAVNLRDGTLEWASVGDCRVYLFKGGRLSRLSLDHNVSSEmVLLGRGPVPGPAGEmITSFIGIENLTEISTSEAPLPLEAGEGVLVVSD-----LHEDRIAmALSRGSDARGILQEVEAQGRPYQDNATLALVIL 208
                                     7        17 |      27        37        47        57        67   |    77        87        97       107      |117       127 |     137       147       157    |    -|      177       187       197       207 
                                             16-MSE                                                 71-MSE                                    114-MSE        129-MSE                          162   168      |                                 
                                                19-MSE                                                                                                                                                     175-MSE                             


Chain B from PDB  Type:PROTEIN  Length:211
 aligned with D1B7C2_THEAS | D1B7C2 from UniProtKB/TrEMBL  Length:208

    Alignment length:211
                               1                                                                                                                                                                                                               
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207 
         D1B7C2_THEAS     - ---MGTGGDKAYCVVVDGMGGMIRGDEAAQRALSASVGVLDAGGSPLDAVLAAQAAVHRWASQGGILGRTGATMAVAAVNLRDGTLEWASVGDCRVYLFKGGRLSRLSLDHNVSSEMVLLGRGPVPGPAGEMITSFIGIENLTEISTSEAPLPLEAGEGVLVVSDGVYRSLHEDRIAMALSRGSDARGILQEVEAQGRPYQDNATLALVIL 208
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------SpoIIE-3rnrB01 B:4-206                                                                                                                                                                                     -- Pfam domains (1)
           Pfam domains (2) ------SpoIIE-3rnrB02 B:4-206                                                                                                                                                                                     -- Pfam domains (2)
         Sec.struct. author .eeeeee..eeeeeeeee.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.......eeeeeeeee....eeeeeee...eeeeee..eeee.....hhhhhhhhh......hhhhhh.............ee....ee.....eeeeee...........eeeeee...hhhhhhhhhh..........eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rnr B  -2 SNAVGTGGDKAYCVVVDGmGGmIRGDEAAQRALSASVGVLDAGGSPLDAVLAAQAAVHRWASQGGILGRTGATmAVAAVNLRDGTLEWASVGDCRVYLFKGGRLSRLSLDHNVSSEmVLLGRGPVPGPAGEmITSFIGIENLTEISTSEAPLPLEAGEGVLVVSDGVYRSLHEDRIAmALSRGSDARGILQEVEAQGRPYQDNATLALVIL 208
                                     7        17 |      27        37        47        57        67   |    77        87        97       107      |117       127 |     137       147       157       167       177       187       197       207 
                                             16-MSE                                                 71-MSE                                    114-MSE        129-MSE                                       175-MSE                             
                                                19-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3RNR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RNR)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: PP2C (22)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (D1B7C2_THEAS | D1B7C2)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.

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