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(-) Description

Title :  THE CRYSTAL STRUCTURE OF A81 FROM SULFOLOBUS TURRETED ICOSAHEDRAL VIRUS
 
Authors :  N. G. Lintner, E. T. Larson, M. J. Young, C. M. Lawrence
Date :  18 Apr 11  (Deposition) - 09 May 12  (Release) - 09 May 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (2x)
Keywords :  4-Helix Bundle, Hyperthermophilic Viral Protein, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. G. Lintner, E. T. Larson, M. J. Young, C. M. Lawrence
The Crystal Structure Of A81 From Sulfolobus Turreted Icosahedral Virus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - STIV-A81
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDEST14
    Expression System Strain: BL21(DE3)RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: A81
    Mutation: YES
    Organism Scientific: SULFOLOBUS TURRETED ICOSAHEDRAL VIRUS
    Organism Taxid: 269145

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (2x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3RKL)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RKL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3RKL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RKL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3RKL)

(-) Exons   (0, 0)

(no "Exon" information available for 3RKL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:80
 aligned with Q6Q0J6_9VIRU | Q6Q0J6 from UniProtKB/TrEMBL  Length:81

    Alignment length:80
                                    11        21        31        41        51        61        71        81
          Q6Q0J6_9VIRU    2 SKITINIKDNTIEYGHKEFVLSNLQEDIKNLAEIVYQLAKLIEKLSQYEEEVDTELYNLLHEYAIYLAGATSLFIDSENK 81
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee..eeee..eeee..hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                  3rkl A  2 SKITINIKDNTIEYGHKEFVLSNLQEDIKNLAEIVYQLAKLIEKLSQYEEEVDTELYNLLHEYAIYLAGATSmFIDSENK 81
                                    11        21        31        41        51        61        71  |     81
                                                                                                   74-MSE   


Chain B from PDB  Type:PROTEIN  Length:80
 aligned with Q6Q0J6_9VIRU | Q6Q0J6 from UniProtKB/TrEMBL  Length:81

    Alignment length:80
                                    11        21        31        41        51        61        71        81
          Q6Q0J6_9VIRU    2 SKITINIKDNTIEYGHKEFVLSNLQEDIKNLAEIVYQLAKLIEKLSQYEEEVDTELYNLLHEYAIYLAGATSLFIDSENK 81
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eeee..eeee..hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                  3rkl B  2 SKITINIKDNTIEYGHKEFVLSNLQEDIKNLAEIVYQLAKLIEKLSQYEEEVDTELYNLLHEYAIYLAGATSmFIDSENK 81
                                    11        21        31        41        51        61        71  |     81
                                                                                                   74-MSE   


Chain C from PDB  Type:PROTEIN  Length:80
 aligned with Q6Q0J6_9VIRU | Q6Q0J6 from UniProtKB/TrEMBL  Length:81

    Alignment length:80
                                    11        21        31        41        51        61        71        81
          Q6Q0J6_9VIRU    2 SKITINIKDNTIEYGHKEFVLSNLQEDIKNLAEIVYQLAKLIEKLSQYEEEVDTELYNLLHEYAIYLAGATSLFIDSENK 81
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eeee..eeee..hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                  3rkl C  2 SKITINIKDNTIEYGHKEFVLSNLQEDIKNLAEIVYQLAKLIEKLSQYEEEVDTELYNLLHEYAIYLAGATSmFIDSENK 81
                                    11        21        31        41        51        61        71  |     81
                                                                                                   74-MSE   


Chain D from PDB  Type:PROTEIN  Length:80
 aligned with Q6Q0J6_9VIRU | Q6Q0J6 from UniProtKB/TrEMBL  Length:81

    Alignment length:80
                                    11        21        31        41        51        61        71        81
          Q6Q0J6_9VIRU    2 SKITINIKDNTIEYGHKEFVLSNLQEDIKNLAEIVYQLAKLIEKLSQYEEEVDTELYNLLHEYAIYLAGATSLFIDSENK 81
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee..eeee..eeee..hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                  3rkl D  2 SKITINIKDNTIEYGHKEFVLSNLQEDIKNLAEIVYQLAKLIEKLSQYEEEVDTELYNLLHEYAIYLAGATSmFIDSENK 81
                                    11        21        31        41        51        61        71  |     81
                                                                                                   74-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3RKL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RKL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3RKL)

(-) Gene Ontology  (0, 0)

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