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Title :  CRYSTAL STRUCTURE OF A PUTATIVE SEL1 REPEAT PROTEIN (KPN_04481) FROM KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE AT 1.65 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  15 Apr 11  (Deposition) - 04 May 11  (Release) - 15 Jun 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha-Alpha Superhelix, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Sel1 Repeat Protein (Kpn_04481) From Klebsiella Pneumoniae Subsp. Pneumoniae Mg 78578 At 1. 65 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE SEL1 REPEAT PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: SEQUENCE DATABASE RESIDUES 18-228
    Gene: YJCO, KPN78578_44120, KPN_04481
    Organism Scientific: KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE
    Organism Taxid: 272620
    Strain: ATCC 700721 / MGH 78578
    Synonym: UNCHARACTERIZED PROTEIN YJCO

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric/Biological Unit (2, 10)
No.NameCountTypeFull Name
1EDO7Ligand/Ion1,2-ETHANEDIOL
2MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:34 , ARG A:35 , GLY A:64 , ASP A:65 , GLY A:66 , ASP A:67 , ALA A:98 , HOH A:339BINDING SITE FOR RESIDUE EDO A 229
2AC2SOFTWAREARG A:114 , GLY A:194 , GLU A:197BINDING SITE FOR RESIDUE EDO A 230
3AC3SOFTWAREGLN A:24 , VAL A:96 , GLY A:99 , LYS A:101 , GLU A:104 , ASP A:130 , ARG A:133BINDING SITE FOR RESIDUE EDO A 231
4AC4SOFTWAREGLN A:24 , TYR A:25 , GLU A:97 , LEU A:107 , HOH A:314BINDING SITE FOR RESIDUE EDO A 232
5AC5SOFTWAREGLN A:87 , GLN A:90 , LYS A:94 , CYS A:211 , HOH A:406BINDING SITE FOR RESIDUE EDO A 233
6AC6SOFTWARELYS A:52 , HOH A:389 , HOH A:400BINDING SITE FOR RESIDUE EDO A 234
7AC7SOFTWARETYR A:38 , TYR A:39 , SER A:102 , ASP A:120 , HOH A:306BINDING SITE FOR RESIDUE EDO A 235

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:211 -A:219

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3RJV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RJV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3RJV)

(-) Exons   (0, 0)

(no "Exon" information available for 3RJV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:208
 aligned with A6TH02_KLEP7 | A6TH02 from UniProtKB/TrEMBL  Length:228

    Alignment length:208
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219        
         A6TH02_KLEP7    20 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRISK 227
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------------------------------------------------------------------------------------------------------------------------------------------------------------Sel1-3rjvA01 A:178-215                ------------ Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------Sel1-3rjvA02 A:178-215                ------------ Pfam domains (2)
           Pfam domains (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------Sel1-3rjvA03 A:178-215                ------------ Pfam domains (3)
         Sec.struct. author ..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rjv A  20 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQmLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGmmFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRISK 227
                                    29        39        49        59        69        79        89        99       109       119       129       139     | 149       159       169       179      |189       199       209       219        
                                                                                                                                                       145-MSE                                  186-MSE                                     
                                                                                                                                                                                                 187-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3RJV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RJV)

(-) Pfam Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Clan: TPR (230)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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