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(-) Description

Title :  CRYSTAL STRUCTURE OF LIPOLYTIC PROTEIN G-D-S-L FAMILY FROM ALICYCLOBACILLUS ACIDOCALDARIUS SUBSP. ACIDOCALDARIUS DSM 446
 
Authors :  C. Chang, G. Chhor, J. Bearden, A. Joachimiak, Midwest Center For St Genomics (Mcsg)
Date :  15 Apr 11  (Deposition) - 27 Apr 11  (Release) - 27 Apr 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Chang, G. Chhor, J. Bearden, A. Joachimiak
Crystal Structure Of Lipolytic Protein G-D-S-L Family From Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius Dsm 446
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LIPOLYTIC PROTEIN G-D-S-L FAMILY
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)MAGIC
    Expression System Taxid: 469008
    Expression System Vector: PMCSG7
    Gene: AACI_2599
    Organism Scientific: ALICYCLOBACILLUS ACIDOCALDARIUS SUBSP. ACIDOCALDARIUS
    Organism Taxid: 521098
    Strain: ATCC 27009 / DSM 446 / 104-1A

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 30)

Asymmetric/Biological Unit (6, 30)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CL2Ligand/IonCHLORIDE ION
3CSO2Mod. Amino AcidS-HYDROXYCYSTEINE
4EDO4Ligand/Ion1,2-ETHANEDIOL
5MSE16Mod. Amino AcidSELENOMETHIONINE
6SO44Ligand/IonSULFATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:13 , SER A:14 , GLY A:62 , VAL A:90 , ASN A:91 , HIS A:193 , HOH A:375 , HOH A:425BINDING SITE FOR RESIDUE ACT A 301
02AC2SOFTWAREALA A:27 , PRO A:100 , HOH A:234 , HOH A:242 , HOH A:283 , HOH A:543 , VAL B:186BINDING SITE FOR RESIDUE EDO A 302
03AC3SOFTWARETYR A:137 , ASP A:144 , PRO A:145 , MSE A:146 , ARG A:191 , HOH A:237 , TRP B:185BINDING SITE FOR RESIDUE EDO A 303
04AC4SOFTWAREPRO A:125 , ARG A:126 , HOH A:214 , HOH A:377 , HOH A:402BINDING SITE FOR RESIDUE EDO A 304
05AC5SOFTWAREGLY A:108 , ILE A:109 , ASP A:110 , GLU A:111 , HOH A:281 , HOH A:368BINDING SITE FOR RESIDUE SO4 A 305
06AC6SOFTWAREHIS A:48 , TRP A:51 , HOH A:255BINDING SITE FOR RESIDUE SO4 A 306
07AC7SOFTWAREARG A:177BINDING SITE FOR RESIDUE CL A 307
08AC8SOFTWAREASP B:13 , SER B:14 , GLY B:62 , VAL B:90 , ASN B:91 , HIS B:193 , HOH B:244 , HOH B:385BINDING SITE FOR RESIDUE ACT B 301
09AC9SOFTWARETRP A:185 , TYR B:137 , ASP B:144 , PRO B:145 , MSE B:146 , ARG B:191 , HOH B:240BINDING SITE FOR RESIDUE EDO B 302
10BC1SOFTWAREGLY B:108 , ILE B:109 , ASP B:110 , GLU B:111 , HOH B:258 , HOH B:341 , HOH B:422 , HOH B:458BINDING SITE FOR RESIDUE SO4 B 303
11BC2SOFTWAREHIS B:48 , TRP B:51 , HOH B:262 , HOH B:399BINDING SITE FOR RESIDUE SO4 B 304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RJT)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1His A:22 -Pro A:23
2His B:22 -Pro B:23

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RJT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3RJT)

(-) Exons   (0, 0)

(no "Exon" information available for 3RJT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:214
 aligned with C8WT89_ALIAD | C8WT89 from UniProtKB/TrEMBL  Length:213

    Alignment length:214
                             1                                                                                                                                                                                                                    
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209    
         C8WT89_ALIAD     - -MIEPGSKLVMVGDSITDCGRAHPVGEAPRGGLGNGYVALVDAHLQVLHPDWRIRVVNVGTSGNTVADVARRWEDDVMALQPDYVSLMIGVNDVWRQFDMPLVVERHVGIDEYRDTLRHLVATTKPRVREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRDVAASEHVPFVDVQAEFDRLLAHLNTWVLAPDRVHPYLNGHLVIARAFLTAVGAL 213
               SCOP domains d3rjta_ A: automated matches                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeehhhhhh......ee........hhhhhhhhhhhhhhhhhh.eeee......hhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhh.eeeee..........hhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhh..hhhhhh......hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rjt A   0 AmIEPGSKLVmVGDSITDcGRAHPVGEAPRGGLGNGYVALVDAHLQVLHPDWRIRVVNVGTSGNTVADVARRWEDDVmALQPDYVSLmIGVNDVWRQFDmPLVVERHVGIDEYRDTLRHLVATTKPRVREmFLLSPFYLEPNRSDPmRKTVDAYIEAmRDVAASEHVPFVDVQAEFDRLLAHLNTWVLAPDRVHPYLNGHLVIARAFLTAVGVL 213
                             |       9|       19        29        39        49        59        69       |79       |89        99       109       119       129|      139      |149       159       169       179       189       199       209    
                             |       10-MSE  18-CSO                                                     77-MSE    87-MSE      99-MSE                        130-MSE         146-MSE    157-MSE                                                    
                             1-MSE                                                                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:214
 aligned with C8WT89_ALIAD | C8WT89 from UniProtKB/TrEMBL  Length:213

    Alignment length:214
                             1                                                                                                                                                                                                                    
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209    
         C8WT89_ALIAD     - -MIEPGSKLVMVGDSITDCGRAHPVGEAPRGGLGNGYVALVDAHLQVLHPDWRIRVVNVGTSGNTVADVARRWEDDVMALQPDYVSLMIGVNDVWRQFDMPLVVERHVGIDEYRDTLRHLVATTKPRVREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRDVAASEHVPFVDVQAEFDRLLAHLNTWVLAPDRVHPYLNGHLVIARAFLTAVGAL 213
               SCOP domains d3rjtb_ B: automated matches                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------Lipase_GDSL_2-3rjtB01 B:9-202                                                                                                                                                                     ----------- Pfam domains (1)
           Pfam domains (2) ---------Lipase_GDSL_2-3rjtB02 B:9-202                                                                                                                                                                     ----------- Pfam domains (2)
         Sec.struct. author .......eeeeeehhhhhh......ee........hhhhhhhhhhhhhhhhhh.eeee......hhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhh.eeeee..........hhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhh..hhhhhh......hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rjt B   0 AmIEPGSKLVmVGDSITDcGRAHPVGEAPRGGLGNGYVALVDAHLQVLHPDWRIRVVNVGTSGNTVADVARRWEDDVmALQPDYVSLmIGVNDVWRQFDmPLVVERHVGIDEYRDTLRHLVATTKPRVREmFLLSPFYLEPNRSDPmRKTVDAYIEAmRDVAASEHVPFVDVQAEFDRLLAHLNTWVLAPDRVHPYLNGHLVIARAFLTAVGVL 213
                             |       9|       19        29        39        49        59        69       |79       |89        99       109       119       129|      139      |149       159       169       179       189       199       209    
                             1-MSE   10-MSE  18-CSO                                                     77-MSE    87-MSE      99-MSE                        130-MSE         146-MSE    157-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RJT)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: SGNH_hydrolase (17)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3RJT)

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