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(-) Description

Title :  CRYSTAL STRUCTURE OF FC RI AND ITS IMPLICATION TO HIGH AFFINITY IMMUNOGLOBULIN G BINDING
 
Authors :  J. Lu, P. D. Sun
Date :  15 Apr 11  (Deposition) - 21 Sep 11  (Release) - 28 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Lu, J. L. Ellsworth, N. Hamacher, S. W. Oak, P. D. Sun
Crystal Structure Of Fc Gamma Receptor I And Its Implicatio In High Affinity Gamma-Immunoglobulin Binding.
J. Biol. Chem. V. 286 40608 2011
PubMed-ID: 21965667  |  Reference-DOI: 10.1074/JBC.M111.257550

(-) Compounds

Molecule 1 - HIGH AFFINITY IMMUNOGLOBULIN GAMMA FC RECEPTOR I
    ChainsA
    EngineeredYES
    Expression SystemCRICETULUS GRISEUS
    Expression System Cell LineCHINESE HAMSTER OVARY (CHO)
    Expression System CommonCHINESE HAMSTER
    Expression System Taxid10029
    FragmentUNP RESIDUES 21-282
    GeneFCGR1A, FCG1, FCGR1, IGFR1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymIGG FC RECEPTOR I, FC-GAMMA RI, FCRI, FC-GAMMA RIA, FCGAMMARIA

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 14)

Asymmetric/Biological Unit (4, 14)
No.NameCountTypeFull Name
1FUC1Ligand/IonALPHA-L-FUCOSE
2MAN3Ligand/IonALPHA-D-MANNOSE
3NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE
4P331Ligand/Ion3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:58 , ASN A:59 , VAL A:77 , ASN A:78 , SER A:80 , NAG A:284BINDING SITE FOR RESIDUE NAG A 283
02AC2SOFTWAREASN A:78 , NAG A:283 , MAN A:285BINDING SITE FOR RESIDUE NAG A 284
03AC3SOFTWARENAG A:284 , HOH A:306BINDING SITE FOR RESIDUE MAN A 285
04AC4SOFTWAREASN A:78BINDING SITE FOR RESIDUE NAG A 4
05AC5SOFTWARENAG A:11 , ARG A:123 , ASN A:150 , ASN A:152 , FUC A:999BINDING SITE FOR RESIDUE NAG A 10
06AC6SOFTWARENAG A:10 , PRO A:49 , GLY A:50 , SER A:51BINDING SITE FOR RESIDUE FUC A 999
07AC7SOFTWARENAG A:10 , MAN A:12 , ARG A:123 , ASP A:129 , HOH A:322BINDING SITE FOR RESIDUE NAG A 11
08AC8SOFTWARENAG A:11BINDING SITE FOR RESIDUE MAN A 12
09AC9SOFTWAREASN A:195 , ALA A:196 , GLU A:213 , HOH A:310BINDING SITE FOR RESIDUE NAG A 8
10BC1SOFTWAREASN A:159 , SER A:161 , HIS A:162 , MAN A:368BINDING SITE FOR RESIDUE NAG A 367
11BC2SOFTWARENAG A:367BINDING SITE FOR RESIDUE MAN A 368
12BC3SOFTWAREASN A:140 , ASN A:163 , NAG A:369BINDING SITE FOR RESIDUE NAG A 366
13BC4SOFTWARENAG A:366BINDING SITE FOR RESIDUE NAG A 369
14BC5SOFTWAREASN A:59 , GLY A:60 , ARG A:92BINDING SITE FOR RESIDUE P33 A 1

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:43 -A:85
2A:124 -A:168
3A:212 -A:260

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Pro A:49 -Gly A:50
2Ser A:200 -Pro A:201

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 1)

Asymmetric/Biological Unit (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_019522L105PFCGR1_HUMANPolymorphism619322AL105P

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3RJD)

(-) Exons   (0, 0)

(no "Exon" information available for 3RJD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:257
 aligned with FCGR1_HUMAN | P12314 from UniProtKB/Swiss-Prot  Length:374

    Alignment length:262
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280  
          FCGR1_HUMAN    21 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 282
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.....eee....eeeeee.........eeeee..ee......eeee...hhhhheeeeeee........eeeeee...eeeee...eee....eeeeeee.hhh..eeeeeee..eeeeeeee...eee...hhhhheeeeeeee...eeeee.eeeeee......eeee.....ee....eeeeee.....-----.eeeeeee..eeeeeee...eeee...hhhhheeeeeeeee.....eee...eee.ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rjd A  21 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLL-----QLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 282
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       | -   |   230       240       250       260       270       280  
                                                                                                                                                                                                                               218   224                                                          

   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3RJD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RJD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3RJD)

(-) Gene Ontology  (18, 18)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (FCGR1_HUMAN | P12314)
molecular function
    GO:0019864    IgG binding    Interacting selectively and non-covalently with an immunoglobulin of an IgG isotype.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005057    signal transducer activity, downstream of receptor    Conveys a signal from an upstream receptor or intracellular signal transducer, converting the signal into a form where it can ultimately trigger a change in the state or activity of a cell.
biological process
    GO:0038096    Fc-gamma receptor signaling pathway involved in phagocytosis    An Fc-gamma receptor signaling pathway that contributes to the endocytic engulfment of external particulate material by phagocytes.
    GO:0002479    antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent    The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class I protein complex following intracellular transport via a TAP (transporter associated with antigen processing) pathway. The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell and is dependent on TAP transport from the cytosol to ER for association with the MHC class I molecule. Class I here refers to classical class I molecules.
    GO:0006955    immune response    Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0060333    interferon-gamma-mediated signaling pathway    A series of molecular signals initiated by the binding of interferon-gamma to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. Interferon gamma is the only member of the type II interferon found so far.
    GO:0006911    phagocytosis, engulfment    The internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis, including the membrane and cytoskeletal processes required, which involves one of three mechanisms: zippering of pseudopods around a target via repeated receptor-ligand interactions, sinking of the target directly into plasma membrane of the phagocytosing cell, or induced uptake via an enhanced membrane ruffling of the phagocytosing cell similar to macropinocytosis.
    GO:0006898    receptor-mediated endocytosis    An endocytosis process in which cell surface receptors ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles.
    GO:0050776    regulation of immune response    Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0030669    clathrin-coated endocytic vesicle membrane    The lipid bilayer surrounding a clathrin-coated endocytic vesicle.
    GO:0031901    early endosome membrane    The lipid bilayer surrounding an early endosome.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FCGR1_HUMAN | P123144w4o 4x4m 4zne

(-) Related Entries Specified in the PDB File

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