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(-) Description

Title :  HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN (HINT) FROM RABBIT COMPLEXED WITH GMP
 
Authors :  C. Brenner, P. Garrison, J. Gilmour, D. Peisach, D. Ringe, G. A. Petsko, J. M. Lowenstein
Date :  11 Feb 97  (Deposition) - 16 Jun 97  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Histidine, Nucleotide-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. Brenner, P. Garrison, J. Gilmour, D. Peisach, D. Ringe, G. A. Petsko J. M. Lowenstein
Crystal Structures Of Hint Demonstrate That Histidine Triad Proteins Are Galt-Related Nucleotide-Binding Proteins.
Nat. Struct. Biol. V. 4 231 1997
PubMed-ID: 9164465  |  Reference-DOI: 10.1038/NSB0397-231

(-) Compounds

Molecule 1 - HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System GeneHINT
    Expression System PlasmidPSGA02-HINT
    Expression System StrainJM109/DE3/LACIQ
    Expression System Taxid562
    Expression System VectorPSGA02
    Expression System Vector TypeLAC
    GeneHINT
    OrganHEART
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    Other DetailsRABBIT HINT CDNA WAS CLONED FROM HEART LIBRARY, EXPRESSED IN ESCHERICHIA COLI, AND PURIFIED BY ADENOSINE-AGAROSE AFFINITY CHROMATOGRAPHY
    SynonymHINT

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
15GP1Ligand/IonGUANOSINE-5'-MONOPHOSPHATE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
15GP2Ligand/IonGUANOSINE-5'-MONOPHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:19 , PHE A:41 , HIS A:42 , ASP A:43 , ILE A:44 , LEU A:53 , ASN A:99 , GLY A:105 , GLN A:106 , SER A:107 , VAL A:108 , HIS A:112 , HIS A:114 , HOH A:219 , HOH A:235BINDING SITE FOR RESIDUE 5GP A 201
2HITUNKNOWNHIS A:110 , HIS A:112 , HIS A:114THE HISTIDINE TRIAD FORMS PART OF THE ALPHA PHOSPHATE-BINDING LOOP IN THE HIT PROTEIN SUPERFAMILY OF NUCLEOTIDE-BINDING PROTEINS.

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RHN)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Arg A:12 -Pro A:13
2Trp A:123 -Pro A:124

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RHN)

(-) PROSITE Motifs  (2, 2)

Asymmetric Unit (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HIT_2PS51084 HIT domain profile.HINT1_RABIT18-126  1A:18-126
2HIT_1PS00892 HIT domain signature.HINT1_RABIT99-117  1A:99-117
Biological Unit 1 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HIT_2PS51084 HIT domain profile.HINT1_RABIT18-126  2A:18-126
2HIT_1PS00892 HIT domain signature.HINT1_RABIT99-117  2A:99-117

(-) Exons   (0, 0)

(no "Exon" information available for 3RHN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:115
 aligned with HINT1_RABIT | P80912 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:115
                                    21        31        41        51        61        71        81        91       101       111       121     
          HINT1_RABIT    12 RPGGDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISAAEDADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 126
               SCOP domains d3rhna_ A: Histidine triad nucleotide-binding protein (HINT)                                                        SCOP domains
               CATH domains 3rhnA00 A:12-126 HIT family, subunit A                                                                              CATH domains
               Pfam domains ------------HIT-3rhnA01 A:24-121                                                                              ----- Pfam domains
         Sec.struct. author .....hhhhhhhhh.....eeee...eeeee.......eeeeeee...........hhhhhhhhhhhhhhhhhhhhhh....eeee..............eeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------HIT_2  PDB: A:18-126 UniProt: 18-126                                                                          PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------HIT_1  PDB: A:99-11--------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 3rhn A  12 RPGGDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISAAEDADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 126
                                    21        31        41        51        61        71        81        91       101       111       121     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: HIT (23)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)
Chain A   (HINT1_RABIT | P80912)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0006915    apoptotic process    A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
    GO:0072332    intrinsic apoptotic signaling pathway by p53 class mediator    A series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, and ends when the execution phase of apoptosis is triggered.
    GO:0009154    purine ribonucleotide catabolic process    The chemical reactions and pathways resulting in the breakdown of a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0000118    histone deacetylase complex    A protein complex that possesses histone deacetylase activity.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HINT1_RABIT | P809121rzy 3o1c 3o1x 3o1z 3qgz 4rhn 5rhn 6rhn

(-) Related Entries Specified in the PDB File

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