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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  THE VIRULENCE FACTOR PEB4 AND THE PERIPLASMIC PROTEIN CJ1289 ARE TWO STRUCTURALLY RELATED SURA-LIKE CHAPERONES IN THE HUMAN PATHOGEN CAMPYLOBACTER JEJUNI
 
Authors :  A. Kale, C. Phansopa, C. Suwannachart, C. J. Craven, J. Rafferty, D. J. K
Date :  08 Apr 11  (Deposition) - 27 Apr 11  (Release) - 27 Apr 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ppiase, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Kale, C. Phansopa, C. Suwannachart, C. J. Craven, J. Rafferty, D. J. Kelly
The Virulence Factor Peb4 And The Periplasmic Protein Cj128 Are Two Structurally Related Sura-Like Chaperones In The Human Pathogen Campylobacter Jejuni
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - POSSIBLE PERIPLASMIC PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CJ1289
    Organism Scientific: CAMPYLOBACTER JEJUNI
    Organism Taxid: 197

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3RGC)

(-) Sites  (0, 0)

(no "Site" information available for 3RGC)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RGC)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Ile A:179 -Leu A:180
2Gly A:214 -Lys A:215
3Asn A:216 -Gly A:217
4Lys A:226 -Asp A:227
5Arg B:48 -Asn B:49
6Ile B:179 -Leu B:180

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RGC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3RGC)

(-) Exons   (0, 0)

(no "Exon" information available for 3RGC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:248
 aligned with Q0P8W8_CAMJE | Q0P8W8 from UniProtKB/TrEMBL  Length:271

    Alignment length:251
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270 
         Q0P8W8_CAMJE    21 NAIAVVVDKEPITTYDIDQTMKALKIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSKNQSYEQFRTNFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYLSNNPQTLENIKNTKKTILKPQNASLNTSNADPRLLGLLSQIPVGSFSPVLNGKNGYELYEVKSKDGTQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEYLR 271
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eeeehhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..hhhhhhhhh..---hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh.ee.eeeeeeee..hhhhhhhhhhhh......eeeeee....hhhhhhhhhhh..............eeeeeeee...ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rgc A  21 NAIAVVVDKEPITTYDIDQTMKALKIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKS---SYEQFRTNFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYLSNNPQTLENIKNTKKTILKPQNASLNTSNADPRLLGLLSQIPVGSFSPVLNGKNGYELYEVKSKDGTQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEYLR 271
                                    30        40        50        60        70        80        90       100|   |  110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270 
                                                                                                          101 105                                                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:252
 aligned with Q0P8W8_CAMJE | Q0P8W8 from UniProtKB/TrEMBL  Length:271

    Alignment length:252
                                                                                                                                                                                                                                                                                    271 
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270| 
         Q0P8W8_CAMJE    21 NAIAVVVDKEPITTYDIDQTMKALKIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSKNQSYEQFRTNFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYLSNNPQTLENIKNTKKTILKPQNASLNTSNADPRLLGLLSQIPVGSFSPVLNGKNGYELYEVKSKDGTQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEYLR-   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) SurA_N-3rgcB01 B:21-122                                                                               ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (1)
           Pfam domains (2) SurA_N-3rgcB02 B:21-122                                                                               ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (2)
         Sec.struct. author ..eeeee..eeeehhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh...eeeeeeeee.hhhhhhhhhhh.......eeeee.....hhhhhhhhhhh........ee....eeee...eee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3rgc B  21 NAIAVVVDKEPITTYDIDQTMKALKIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSKNQSYEQFRTNFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYLSNNPQTLENIKNTKKTILKPQNASLNTSNADPRLLGLLSQIPVGSFSPVLNGKNGYELYEVKSKDGTQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEYLRA 272
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3RGC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RGC)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: Trigger_C (7)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3RGC)

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  Sites
(no "Sites" information available for 3rgc)
 
  Cis Peptide Bonds
    Arg B:48 - Asn B:49   [ RasMol ]  
    Asn A:216 - Gly A:217   [ RasMol ]  
    Gly A:214 - Lys A:215   [ RasMol ]  
    Ile A:179 - Leu A:180   [ RasMol ]  
    Ile B:179 - Leu B:180   [ RasMol ]  
    Lys A:226 - Asp A:227   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

3rfw