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(-) Description

Title :  CRYSTAL STRUCTURE OF PARTICULATE METHANE MONOOXYGENASE (PMMO) FROM METHYLOCYSTIS SP. STRAIN M
 
Authors :  S. M. Smith, A. C. Rosenzweig
Date :  06 Apr 11  (Deposition) - 23 Nov 11  (Release) - 07 Dec 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.68
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K
Keywords :  Membrane, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. M. Smith, S. Rawat, J. Telser, B. M. Hoffman, T. L. Stemmler, A. C. Rosenzweig
Crystal Structure And Characterization Of Particulate Methane Monooxygenase From Methylocystis Species Strain M.
Biochemistry V. 50 10231 2011
PubMed-ID: 22013879  |  Reference-DOI: 10.1021/BI200801Z

(-) Compounds

Molecule 1 - PMOB
    Chains: A, E, I
    Organism Scientific: METHYLOCYSTIS SP. M
    Organism Taxid: 51782
 
Molecule 2 - PEPTIDE
    Chains: D, H
    Engineered: YES
    Synthetic: YES
 
Molecule 3 - PMOA
    Chains: J, B, F
    Organism Scientific: METHYLOCYSTIS SP. M
    Organism Taxid: 51782
 
Molecule 4 - PMOC
    Chains: C, G, K
    Organism Scientific: METHYLOCYSTIS SP. M
    Organism Taxid: 51782

 Structural Features

(-) Chains, Units

  1234567891011
Asymmetric/Biological Unit : ABCDEFGHIJK

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric/Biological Unit (3, 12)
No.NameCountTypeFull Name
1CU2Ligand/IonCOPPER (II) ION
2CUA1Ligand/IonDINUCLEAR COPPER ION
3ZN9Ligand/IonZINC ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:29 , GLU A:31 , HIS A:133 , HIS A:135BINDING SITE FOR RESIDUE CUA A 420
02AC2SOFTWAREHIS E:29 , HIS E:133 , HIS E:135BINDING SITE FOR RESIDUE CU E 420
03AC3SOFTWAREHIS I:29 , HIS I:133 , HIS I:135BINDING SITE FOR RESIDUE CU I 420
04AC4SOFTWAREASP C:129 , HIS C:133 , HIS C:146 , HOH C:259BINDING SITE FOR RESIDUE ZN C 257
05AC5SOFTWAREASN E:178BINDING SITE FOR RESIDUE ZN E 421
06AC6SOFTWAREASP K:129 , HIS K:133 , HIS K:146 , HOH K:259BINDING SITE FOR RESIDUE ZN K 257
07AC7SOFTWAREASP G:129 , HIS G:133 , HIS G:146 , HOH G:259BINDING SITE FOR RESIDUE ZN G 257
08AC8SOFTWAREASP C:93 , HIS C:177 , THR E:330 , ASP E:351BINDING SITE FOR RESIDUE ZN C 258
09AC9SOFTWAREASP G:93 , HIS G:177BINDING SITE FOR RESIDUE ZN G 258
10BC1SOFTWAREASP K:93 , HIS K:177BINDING SITE FOR RESIDUE ZN K 258
11BC2SOFTWAREASP A:340 , PHE I:162 , ASN I:178BINDING SITE FOR RESIDUE ZN I 421
12BC3SOFTWAREASN A:178BINDING SITE FOR RESIDUE ZN A 421

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RFR)

(-) Cis Peptide Bonds  (35, 35)

Asymmetric/Biological Unit
No.Residues
1Asp A:164 -Pro A:165
2Asp A:226 -Asp A:227
3Thr A:273 -Glu A:274
4Glu A:274 -Gly A:275
5Gly A:275 -Thr A:276
6Val A:295 -Pro A:296
7Pro A:296 -Gly A:297
8Gln A:334 -Lys A:335
9Tyr A:341 -Leu A:342
10Leu A:348 -Ser A:349
11Gly J:214 -Lys J:215
12Gly B:214 -Lys B:215
13Gly F:214 -Lys F:215
14Asn C:196 -Val C:197
15Asn G:196 -Val G:197
16Asn K:196 -Val K:197
17Asp E:164 -Pro E:165
18Asp E:226 -Asp E:227
19Thr E:273 -Glu E:274
20Glu E:274 -Gly E:275
21Gly E:275 -Thr E:276
22Val E:295 -Pro E:296
23Pro E:296 -Gly E:297
24Gln E:334 -Lys E:335
25Tyr E:341 -Leu E:342
26Leu E:348 -Ser E:349
27Asp I:164 -Pro I:165
28Asp I:226 -Asp I:227
29Thr I:273 -Glu I:274
30Glu I:274 -Gly I:275
31Gly I:275 -Thr I:276
32Val I:295 -Pro I:296
33Pro I:296 -Gly I:297
34Gln I:334 -Lys I:335
35Leu I:348 -Ser I:349

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RFR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3RFR)

(-) Exons   (0, 0)

(no "Exon" information available for 3RFR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:386
 aligned with Q9KX36_9RHIZ | Q9KX36 from UniProtKB/TrEMBL  Length:419

    Alignment length:386
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408      
         Q9KX36_9RHIZ    29 HGEKSQQAFLRMRTLNWYDVQWSKTTVNVNEEMILSGKVHVFSAWPQAVANPRVSFLNAGEPGPVLVRTAQFIGEQFAPRSVSLEIGKDYAFSINLRGRRAGRWHVHAQINVEGGGPIIGPGQWIEIKGDMKDFTDPVTLLDGSTVDLENYGISRIYAWHLPWLAVGAAWILFWFIRKGIIASYVRVAEGRPDDVIGDDDRRIGAIVLALTILATIVGYAVTNSTFPRTIPLQAGLQKPLTPIETEGTVGVGKEQVTTELNGGVYKVPGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDDVIAPGESKEIVVKIQDARWDIERLSDLAYDTDSQVGGLLFFFTPDGKRFAAEIGGPVIPKFV 414
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh.eeeeeee....eee...eeeeeeeeee.............eeeeee.....eeeeeeee..ee...........eeeeeeeeee...eeeeeeeeeee...eeeeeeeeeeeee.hhhhh...ee.....ee.....hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhh...............................eeeeeeeeeee...eeeeeeeee.......eeeeee....eee...............ee..............eeeeeeeeehhhhhhhhhhhhhhh...eeeeeeeee.....eeeeeeeee.eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rfr A  29 HGEKSQQAFLRMRTLNWYDVQWSKTTVNVNEEMILSGKVHVFSAWPQAVANPRVSFLNAGEPGPVLVRTAQFIGEQFAPRSVSLEIGKDYAFSINLRGRRAGRWHVHAQINVEGGGPIIGPGQWIEIKGDMKDFTDPVTLLDGSTVDLENYGISRIYAWHLPWLAVGAAWILFWFIRKGIIASYVRVAEGRPDDVIGDDDRRIGAIVLALTILATIVGYAVTNSTFPRTIPLQAGLQKPLTPIETEGTVGVGKEQVTTELNGGVYKVPGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDDVIAPGESKEIVVKIQDARWDIERLSDLAYDTDSQVGGLLFFFTPDGKRFAAEIGGPVIPKFV 414
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408      


Chain B from PDB  Type:PROTEIN  Length:242
 aligned with O06122_9RHIZ | O06122 from UniProtKB/TrEMBL  Length:252

    Alignment length:242
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  
         O06122_9RHIZ    11 GPFNSVAEAAGCVATTDWMLLVLLFFAVLGGYHVHFMLTAGDWDFWVDWKDRRMWPTVLPILGVTFCAASQAFWWVNFRLPFGAVFAVLGLMIGEWINRYVNFWGWTYFPISLVFPSAMIVPAIWLDVILLLSGSYVITAVVGSLGWGLLFYPNNWPAIAAFHQATEQHGQLMTLADLIGLHFVRTSMPEYIRMVERGTLRTFGKDVVPVAAFFSGFVSMMVYFLWWFMGRWYSTTKRIEQI 252
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.......hhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee..eeeehhhhhhhhh......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rfr B  11 GPFNSVAEAAGCVATTDWMLLVLLFFAVLGGYHVHFMLTAGDWDFWVDWKDRRMWPTVLPILGVTFCAASQAFWWVNFRLPFGAVFAVLGLMIGEWINRYVNFWGWTYFPISLVFPSAMIVPAIWLDVILLLSGSYVITAVVGSLGWGLLFYPNNWPAIAAFHQATEQHGQLMTLADLIGLHFVRTSMPEYIRMVERGTLRTFGKDVVPVAAFFSGFVSMMVYFLWWFMGRWYSTTKRIEQI 252
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  


Chain C from PDB  Type:PROTEIN  Length:210
 aligned with Q9KX37_9RHIZ | Q9KX37 from UniProtKB/TrEMBL  Length:256

    Alignment length:237
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       
         Q9KX37_9RHIZ    16 ESVVDLRGMWIGLAVLNVFYLIVRIYEQVFGWRAGLDSFAPEFQTYWMSILWTEIPLELVSGLGLAGYLWKTRDRNVDAVAPREEMRRLVVLVQWLVVYGIAIYWGASFFTEQDGAWHMTVIRDTDFTPSHIIEFYMSYPIYSVIAVGAFFYAKTRIPYFAHGYSLAFLIVAIGPFMIIPNVGLNEWGHTFWFMEELFVAPLHWGFVFFGWMALGVFGVVLQILGRIHALIGKEGVA 252
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh....---------------------------.....hhhhhhhhhhhhhhhh..hhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rfr C  16 ESVVDLRGMWIGLAVLNVFYLIVRIYEQVFGWRAGLDSFAPEFQTYWMSILWTEIPLELVSGLGLAGYLWKTRDRNVDAVAPREEMRRLVVLVQWLVVYGIAIYWGASFFTEQDGAWHMTVIRDTDFTPSHIIEFYMSYPIYSVIAVGAFFYAKTRIPYFAHGYSLAFLIVAIGPFMIIPNV---------------------------GWMALGVFGVVLQILGRIHALIGKEGVA 252
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195 |       -         -       225       235       245       
                                                                                                                                                                                                               197                         225                           


Chain D from PDB  Type:PROTEIN  Length:19
                                                   
               SCOP domains ------------------- SCOP domains
               CATH domains ------------------- CATH domains
               Pfam domains ------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------- SAPs(SNPs)
                    PROSITE ------------------- PROSITE
                 Transcript ------------------- Transcript
                 3rfr D   1 AAAAAAAAAAAAAAAAAAA  19
                                    10         


Chain E from PDB  Type:PROTEIN  Length:386
 aligned with Q9KX36_9RHIZ | Q9KX36 from UniProtKB/TrEMBL  Length:419

    Alignment length:386
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408      
         Q9KX36_9RHIZ    29 HGEKSQQAFLRMRTLNWYDVQWSKTTVNVNEEMILSGKVHVFSAWPQAVANPRVSFLNAGEPGPVLVRTAQFIGEQFAPRSVSLEIGKDYAFSINLRGRRAGRWHVHAQINVEGGGPIIGPGQWIEIKGDMKDFTDPVTLLDGSTVDLENYGISRIYAWHLPWLAVGAAWILFWFIRKGIIASYVRVAEGRPDDVIGDDDRRIGAIVLALTILATIVGYAVTNSTFPRTIPLQAGLQKPLTPIETEGTVGVGKEQVTTELNGGVYKVPGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDDVIAPGESKEIVVKIQDARWDIERLSDLAYDTDSQVGGLLFFFTPDGKRFAAEIGGPVIPKFV 414
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh.eeeeeee....eee...eeeeeeeeee.............eeeeee.....eeeeeeee..ee...........eeeeeeeeee...eeeeeeeeeee...eeeeeeeeeeeee.hhhhh...ee.....ee.....hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhh.............................eeeeeeeeeeeee...eeeeeeeeeee.....eeeeee....eee...............ee..............eeeeeeeeehhhhhhhhhhhhhhh...eeeeeeeee.....eeeeeeeee.eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rfr E  29 HGEKSQQAFLRMRTLNWYDVQWSKTTVNVNEEMILSGKVHVFSAWPQAVANPRVSFLNAGEPGPVLVRTAQFIGEQFAPRSVSLEIGKDYAFSINLRGRRAGRWHVHAQINVEGGGPIIGPGQWIEIKGDMKDFTDPVTLLDGSTVDLENYGISRIYAWHLPWLAVGAAWILFWFIRKGIIASYVRVAEGRPDDVIGDDDRRIGAIVLALTILATIVGYAVTNSTFPRTIPLQAGLQKPLTPIETEGTVGVGKEQVTTELNGGVYKVPGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDDVIAPGESKEIVVKIQDARWDIERLSDLAYDTDSQVGGLLFFFTPDGKRFAAEIGGPVIPKFV 414
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408      


Chain F from PDB  Type:PROTEIN  Length:242
 aligned with O06122_9RHIZ | O06122 from UniProtKB/TrEMBL  Length:252

    Alignment length:242
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  
         O06122_9RHIZ    11 GPFNSVAEAAGCVATTDWMLLVLLFFAVLGGYHVHFMLTAGDWDFWVDWKDRRMWPTVLPILGVTFCAASQAFWWVNFRLPFGAVFAVLGLMIGEWINRYVNFWGWTYFPISLVFPSAMIVPAIWLDVILLLSGSYVITAVVGSLGWGLLFYPNNWPAIAAFHQATEQHGQLMTLADLIGLHFVRTSMPEYIRMVERGTLRTFGKDVVPVAAFFSGFVSMMVYFLWWFMGRWYSTTKRIEQI 252
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.......hhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee..eeeehhhhhhhhh......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rfr F  11 GPFNSVAEAAGCVATTDWMLLVLLFFAVLGGYHVHFMLTAGDWDFWVDWKDRRMWPTVLPILGVTFCAASQAFWWVNFRLPFGAVFAVLGLMIGEWINRYVNFWGWTYFPISLVFPSAMIVPAIWLDVILLLSGSYVITAVVGSLGWGLLFYPNNWPAIAAFHQATEQHGQLMTLADLIGLHFVRTSMPEYIRMVERGTLRTFGKDVVPVAAFFSGFVSMMVYFLWWFMGRWYSTTKRIEQI 252
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  


Chain G from PDB  Type:PROTEIN  Length:211
 aligned with Q9KX37_9RHIZ | Q9KX37 from UniProtKB/TrEMBL  Length:256

    Alignment length:237
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       
         Q9KX37_9RHIZ    16 ESVVDLRGMWIGLAVLNVFYLIVRIYEQVFGWRAGLDSFAPEFQTYWMSILWTEIPLELVSGLGLAGYLWKTRDRNVDAVAPREEMRRLVVLVQWLVVYGIAIYWGASFFTEQDGAWHMTVIRDTDFTPSHIIEFYMSYPIYSVIAVGAFFYAKTRIPYFAHGYSLAFLIVAIGPFMIIPNVGLNEWGHTFWFMEELFVAPLHWGFVFFGWMALGVFGVVLQILGRIHALIGKEGVA 252
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh....--------------------------......hhhhhhhhhhhhhhhh..hhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rfr G  16 ESVVDLRGMWIGLAVLNVFYLIVRIYEQVFGWRAGLDSFAPEFQTYWMSILWTEIPLELVSGLGLAGYLWKTRDRNVDAVAPREEMRRLVVLVQWLVVYGIAIYWGASFFTEQDGAWHMTVIRDTDFTPSHIIEFYMSYPIYSVIAVGAFFYAKTRIPYFAHGYSLAFLIVAIGPFMIIPNV--------------------------FGWMALGVFGVVLQILGRIHALIGKEGVA 252
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195 |       -         -       225       235       245       
                                                                                                                                                                                                               197                        224                            


Chain H from PDB  Type:PROTEIN  Length:16
                                                
               SCOP domains ---------------- SCOP domains
               CATH domains ---------------- CATH domains
               Pfam domains ---------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------- SAPs(SNPs)
                    PROSITE ---------------- PROSITE
                 Transcript ---------------- Transcript
                 3rfr H   4 AAAAAAAAAAAAAAAA  19
                                    13      


Chain I from PDB  Type:PROTEIN  Length:386
 aligned with Q9KX36_9RHIZ | Q9KX36 from UniProtKB/TrEMBL  Length:419

    Alignment length:386
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408      
         Q9KX36_9RHIZ    29 HGEKSQQAFLRMRTLNWYDVQWSKTTVNVNEEMILSGKVHVFSAWPQAVANPRVSFLNAGEPGPVLVRTAQFIGEQFAPRSVSLEIGKDYAFSINLRGRRAGRWHVHAQINVEGGGPIIGPGQWIEIKGDMKDFTDPVTLLDGSTVDLENYGISRIYAWHLPWLAVGAAWILFWFIRKGIIASYVRVAEGRPDDVIGDDDRRIGAIVLALTILATIVGYAVTNSTFPRTIPLQAGLQKPLTPIETEGTVGVGKEQVTTELNGGVYKVPGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDDVIAPGESKEIVVKIQDARWDIERLSDLAYDTDSQVGGLLFFFTPDGKRFAAEIGGPVIPKFV 414
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh.eeeeeee....eee...eeeeeeeeee.............eeeeee.....eeeeeeee..ee...........eeeeeeeeee...eeeeeeeeeee...eeeeeeeeeeeee.hhhhh...ee.....ee.....hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhh..............................eeeeeeeeeeee...eeeeeeeeee......eeeeee....eee...............ee..............eeeeeeeeehhhhhhhhhhhhhhh...ee..eeeee.....eeeee..ee.eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rfr I  29 HGEKSQQAFLRMRTLNWYDVQWSKTTVNVNEEMILSGKVHVFSAWPQAVANPRVSFLNAGEPGPVLVRTAQFIGEQFAPRSVSLEIGKDYAFSINLRGRRAGRWHVHAQINVEGGGPIIGPGQWIEIKGDMKDFTDPVTLLDGSTVDLENYGISRIYAWHLPWLAVGAAWILFWFIRKGIIASYVRVAEGRPDDVIGDDDRRIGAIVLALTILATIVGYAVTNSTFPRTIPLQAGLQKPLTPIETEGTVGVGKEQVTTELNGGVYKVPGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDDVIAPGESKEIVVKIQDARWDIERLSDLAYDTDSQVGGLLFFFTPDGKRFAAEIGGPVIPKFV 414
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408      


Chain J from PDB  Type:PROTEIN  Length:242
 aligned with O06122_9RHIZ | O06122 from UniProtKB/TrEMBL  Length:252

    Alignment length:242
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  
         O06122_9RHIZ    11 GPFNSVAEAAGCVATTDWMLLVLLFFAVLGGYHVHFMLTAGDWDFWVDWKDRRMWPTVLPILGVTFCAASQAFWWVNFRLPFGAVFAVLGLMIGEWINRYVNFWGWTYFPISLVFPSAMIVPAIWLDVILLLSGSYVITAVVGSLGWGLLFYPNNWPAIAAFHQATEQHGQLMTLADLIGLHFVRTSMPEYIRMVERGTLRTFGKDVVPVAAFFSGFVSMMVYFLWWFMGRWYSTTKRIEQI 252
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.......hhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee..eeeehhhhhhhhh......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rfr J  11 GPFNSVAEAAGCVATTDWMLLVLLFFAVLGGYHVHFMLTAGDWDFWVDWKDRRMWPTVLPILGVTFCAASQAFWWVNFRLPFGAVFAVLGLMIGEWINRYVNFWGWTYFPISLVFPSAMIVPAIWLDVILLLSGSYVITAVVGSLGWGLLFYPNNWPAIAAFHQATEQHGQLMTLADLIGLHFVRTSMPEYIRMVERGTLRTFGKDVVPVAAFFSGFVSMMVYFLWWFMGRWYSTTKRIEQI 252
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  


Chain K from PDB  Type:PROTEIN  Length:211
 aligned with Q9KX37_9RHIZ | Q9KX37 from UniProtKB/TrEMBL  Length:256

    Alignment length:237
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       
         Q9KX37_9RHIZ    16 ESVVDLRGMWIGLAVLNVFYLIVRIYEQVFGWRAGLDSFAPEFQTYWMSILWTEIPLELVSGLGLAGYLWKTRDRNVDAVAPREEMRRLVVLVQWLVVYGIAIYWGASFFTEQDGAWHMTVIRDTDFTPSHIIEFYMSYPIYSVIAVGAFFYAKTRIPYFAHGYSLAFLIVAIGPFMIIPNVGLNEWGHTFWFMEELFVAPLHWGFVFFGWMALGVFGVVLQILGRIHALIGKEGVA 252
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh....--------------------------......hhhhhhhhhhhhhhhh..hhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rfr K  16 ESVVDLRGMWIGLAVLNVFYLIVRIYEQVFGWRAGLDSFAPEFQTYWMSILWTEIPLELVSGLGLAGYLWKTRDRNVDAVAPREEMRRLVVLVQWLVVYGIAIYWGASFFTEQDGAWHMTVIRDTDFTPSHIIEFYMSYPIYSVIAVGAFFYAKTRIPYFAHGYSLAFLIVAIGPFMIIPNV--------------------------FGWMALGVFGVVLQILGRIHALIGKEGVA 252
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195 |       -         -       225       235       245       
                                                                                                                                                                                                               197                        224
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3RFR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RFR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3RFR)

(-) Gene Ontology  (3, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,E,I   (Q9KX36_9RHIZ | Q9KX36)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain B,F,J   (O06122_9RHIZ | O06122)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain C,G,K   (Q9KX37_9RHIZ | Q9KX37)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  3rfr
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  O06122_9RHIZ | O06122
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  Q9KX36_9RHIZ | Q9KX36
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  Q9KX37_9RHIZ | Q9KX37
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3RFR)

(-) Related Entries Specified in the PDB File

1yew PMMO FROM METHYLOCOCCUS CAPSULATUS (BATH)
3chx PMMO FROM METHYLOSINUS TRICHOSPORIUM OB3B
3rgb PMMO FROM METHYLOCOCCUS CAPSULATUS (BATH)