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(-) Description

Title :  CRYSTAL STRUCTURE OF THE LUCIFERASE-LIKE MONOOXYGENASE FROM BACILLUS CEREUS ATCC 10987.
 
Authors :  M. J. Domagalski, M. Chruszcz, X. Xu, H. Cui, S. Chin, A. Savchenko, A. Ed A. Joachimiak, W. Minor, Midwest Center For Structural Genomics
Date :  28 Mar 11  (Deposition) - 11 May 11  (Release) - 11 May 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A (1x),B (1x)
Keywords :  Unknown, Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Enzyme, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Domagalski, M. Chruszcz, X. Xu, H. Cui, S. Chin, A. Savchenko, A. Edwards, A. Joachimiak, W. Minor
Crystal Structure Of The Luciferase-Like Monooxygenase From Bacillus Cereus Atcc 10987.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE LUCIFERASE-LIKE MONOOXYGENASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P15TVLIC
    Expression System Strain: BL21-CODONPLUS(DE3)-RIPL
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: BCE_1067
    Organism Scientific: BACILLUS CEREUS
    Organism Taxid: 222523
    Strain: ATCC 10987

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (1x): A (1x)B (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 24)

Asymmetric Unit (2, 24)
No.NameCountTypeFull Name
1MSE14Mod. Amino AcidSELENOMETHIONINE
2SO410Ligand/IonSULFATE ION
Biological Unit 1 (2, 24)
No.NameCountTypeFull Name
1MSE14Mod. Amino AcidSELENOMETHIONINE
2SO410Ligand/IonSULFATE ION
Biological Unit 2 (2, 13)
No.NameCountTypeFull Name
1MSE7Mod. Amino AcidSELENOMETHIONINE
2SO46Ligand/IonSULFATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:15 , SER A:289 , ASN A:290 , SO4 A:353 , HOH A:380 , TYR B:265 , TYR B:268BINDING SITE FOR RESIDUE SO4 A 351
02AC2SOFTWARETYR A:136 , GLY A:185 , GLU A:186 , SER A:187BINDING SITE FOR RESIDUE SO4 A 352
03AC3SOFTWARETRP A:6 , ASP A:53 , SER A:289 , ASN A:290 , SO4 A:351BINDING SITE FOR RESIDUE SO4 A 353
04AC4SOFTWARELYS A:274 , GLN A:303 , ARG A:307 , HOH A:435BINDING SITE FOR RESIDUE SO4 A 354
05AC5SOFTWAREARG B:332 , HOH B:484BINDING SITE FOR RESIDUE SO4 B 351
06AC6SOFTWARETYR B:136 , GLU B:186 , SER B:187BINDING SITE FOR RESIDUE SO4 B 352
07AC7SOFTWAREGLY B:56 , VAL B:57 , HOH B:463BINDING SITE FOR RESIDUE SO4 B 353
08AC8SOFTWAREARG B:15 , ASP B:53 , SER B:289 , ASN B:290 , SO4 B:355 , HOH B:405BINDING SITE FOR RESIDUE SO4 B 354
09AC9SOFTWARETRP B:6 , ALA B:47 , LEU B:49 , ASP B:53 , ILE B:54 , SER B:289 , ASN B:290 , SO4 B:354BINDING SITE FOR RESIDUE SO4 B 355
10BC1SOFTWARELYS B:274 , GLN B:303 , ARG B:307BINDING SITE FOR RESIDUE SO4 B 356

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RAO)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ser A:170 -Pro A:171
2Ser A:324 -Pro A:325
3Ser B:170 -Pro B:171
4Ser B:324 -Pro B:325

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RAO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3RAO)

(-) Exons   (0, 0)

(no "Exon" information available for 3RAO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:341
 aligned with Q73CJ8_BACC1 | Q73CJ8 from UniProtKB/TrEMBL  Length:352

    Alignment length:352
                                1                                                                                                                                                                                                                                                                                                                                                           
                                |    6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346  
         Q73CJ8_BACC1     - ----MEYGFWLPIFGGWLRNVNDESMPPTFEYAKQTAQAAEQLGFSTTLIAELNLNDIKGVSAPSLEAWTTAAALAAVTDRLEIMTAVRPGFHNPAVTAKMAANIDQLSNGRFTLNVVSAWWEEEAKQYGGVFTAHDERYDRTEEFVTILKGLWKEEEFSYKGNFYELHHTHLSPKPVQKQGIKLYAGGESKRGKEVIVNHADAYVMHGGTVEEVSVKIEDMKNRRKKVTEEPLQSFGLAAYVICRHTEEEALEEWRRITDVKDDALGYAGYQDFVSKSQLEQQVKLNDYSVSNRGLRPNLIGTPEQIAERILAFEKVGVTLLLLQFSPQLEEMKRFSEKVMPLVEAKRKEL 348
               SCOP domains d3raoa_ A: automated matches                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee..................hhhhhhhhhhhhhhh...eeee................hhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh..eeee....eeeee.............eee...hhhhhhhhhhhh.eeee...hhhhhhhhhhhhhhhhhh........eeeeee.ee..hhhhhhhhhhhhh...-----------..hhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rao A  -3 YFQGVEYGFWLPIFGGWLRNVNDESmPPTFEYAKQTAQAAEQLGFSTTLIAELNLNDIKGVSAPSLEAWTTAAALAAVTDRLEImTAVRPGFHNPAVTAKmAANIDQLSNGRFTLNVVSAWWEEEAKQYGGVFTAHDERYDRTEEFVTILKGLWKEEEFSYKGNFYELHHTHLSPKPVQKQGIKLYAGGESKRGKEVIVNHADAYVmHGGTVEEVSVKIEDmKNRRKKVTEEPLQSFGLAAYVICRHTEEEALEEWRRITDVK-----------FVSKSQLEQQVKLNDYSVSNRGLRPNLIGTPEQIAERILAFEKVGVTLLLLQFSPQLEEmKRFSEKVmPLVEAKRKEL 348
                                     6        16     |  26        36        46        56        66        76    |   86        96|      106       116       126       136       146       156       166       176       186       196      |206       216 |     226       236       246       256  |      -    |  276       286       296       306       316       326   |   336 |     346  
                                                    22-MSE                                                     81-MSE          97-MSE                                                                                                   203-MSE        218-MSE                                  259         271                                                        330-MSE 338-MSE      


Chain B from PDB  Type:PROTEIN  Length:349
 aligned with Q73CJ8_BACC1 | Q73CJ8 from UniProtKB/TrEMBL  Length:352

    Alignment length:351
                               1                                                                                                                                                                                                                                                                                                                                                           
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347 
         Q73CJ8_BACC1     - ---MEYGFWLPIFGGWLRNVNDESMPPTFEYAKQTAQAAEQLGFSTTLIAELNLNDIKGVSAPSLEAWTTAAALAAVTDRLEIMTAVRPGFHNPAVTAKMAANIDQLSNGRFTLNVVSAWWEEEAKQYGGVFTAHDERYDRTEEFVTILKGLWKEEEFSYKGNFYELHHTHLSPKPVQKQGIKLYAGGESKRGKEVIVNHADAYVMHGGTVEEVSVKIEDMKNRRKKVTEEPLQSFGLAAYVICRHTEEEALEEWRRITDVKDDALGYAGYQDFVSKSQLEQQVKLNDYSVSNRGLRPNLIGTPEQIAERILAFEKVGVTLLLLQFSPQLEEMKRFSEKVMPLVEAKRKEL 348
               SCOP domains d3raob_ B: automated matches                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----Bac_luciferase-3raoB01 B:2-318                                                                                                                                                                                                                                                                                               ------------------------------ Pfam domains (1)
           Pfam domains (2) ----Bac_luciferase-3raoB02 B:2-318                                                                                                                                                                                                                                                                                               ------------------------------ Pfam domains (2)
         Sec.struct. author ....eeeee..................hhhhhhhhhhhhh.....eeee................hhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhh.......hhhhhhhhhhhhhhhhhhh..eeee....eeeee.............eee...hhhhhhhhhhhh.eeee...hhhhhhhhhhhhhhhhhhhh......eeeeee.ee..hhhhhhhhhhhhhh..--...........hhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rao B  -2 FQGVEYGFWLPIFGGWLRNVNDESmPPTFEYAKQTAQAAEQLGFSTTLIAELNLNDIKGVSAPSLEAWTTAAALAAVTDRLEImTAVRPGFHNPAVTAKmAANIDQLSNGRFTLNVVSAWWEEEAKQYGGVFTAHDERYDRTEEFVTILKGLWKEEEFSYKGNFYELHHTHLSPKPVQKQGIKLYAGGESKRGKEVIVNHADAYVmHGGTVEEVSVKIEDmKNRRKKVTEEPLQSFGLAAYVICRHTEEEALEEWRRITDVK--ALGYAGYQDFVSKSQLEQQVKLNDYSVSNRGLRPNLIGTPEQIAERILAFEKVGVTLLLLQFSPQLEEmKRFSEKVmPLVEAKRKEL 348
                                     7        17    |   27        37        47        57        67        77   |    87        97       107       117       127       137       147       157       167       177       187       197     | 207       217|      227       237       247       257 |  |  267       277       287       297       307       317       327  |    337|      347 
                                                   22-MSE                                                     81-MSE          97-MSE                                                                                                   203-MSE        218-MSE                                  259  |                                                                 330-MSE 338-MSE      
                                                                                                                                                                                                                                                                                                  262
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RAO)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: no clan defined [family: Bac_luciferase] (10)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q73CJ8_BACC1 | Q73CJ8)
molecular function
    GO:0016705    oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen    Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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