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(-) Description

Title :  CRYSTAL STRUCTURE OF THE BROX BRO1 DOMAIN
 
Authors :  R. L. Mu, J. S. Jiang, G. Snyder, P. Smith, T. Xiao
Date :  25 Mar 11  (Deposition) - 14 Sep 11  (Release) - 16 Nov 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A
Keywords :  Bro1 Domain, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Sette, R. Mu, V. Dussupt, J. Jiang, G. Snyder, P. Smith, T. S. Xiao, F. Bouamr
The Phe105 Loop Of Alix Bro1 Domain Plays A Key Role In Hiv-1 Release.
Structure V. 19 1485 2011
PubMed-ID: 21889351  |  Reference-DOI: 10.1016/J.STR.2011.07.016

(-) Compounds

Molecule 1 - BRO1 DOMAIN-CONTAINING PROTEIN BROX
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 2-374
    Gene: BROX, BROFTI, C1ORF58
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BRO1 DOMAIN- AND CAAX MOTIF-CONTAINING PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 19)

Asymmetric/Biological Unit (2, 19)
No.NameCountTypeFull Name
1EDO8Ligand/Ion1,2-ETHANEDIOL
2FMT11Ligand/IonFORMIC ACID

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:155 , VAL A:184 , GLN A:188 , PRO A:353 , HOH A:690 , HOH A:823 , HOH A:840BINDING SITE FOR RESIDUE EDO A 1
02AC2SOFTWAREPHE A:373 , ASP A:374 , HOH A:682 , HOH A:750BINDING SITE FOR RESIDUE EDO A 375
03AC3SOFTWAREASN A:73 , PRO A:360 , THR A:361 , HOH A:715 , HOH A:730BINDING SITE FOR RESIDUE EDO A 376
04AC4SOFTWARELYS A:141 , GLN A:324 , ARG A:325 , GLY A:328 , PHE A:329 , HOH A:563 , HOH A:590 , HOH A:639 , HOH A:700BINDING SITE FOR RESIDUE EDO A 377
05AC5SOFTWARETYR A:20 , ILE A:87 , GLN A:88 , ASN A:89 , HOH A:786 , HOH A:798 , HOH A:833BINDING SITE FOR RESIDUE EDO A 378
06AC6SOFTWARESER A:38 , SER A:39 , ARG A:42 , HOH A:569 , HOH A:834BINDING SITE FOR RESIDUE EDO A 379
07AC7SOFTWAREASP A:224 , ARG A:239 , LYS A:240 , HIS A:243 , HOH A:440BINDING SITE FOR RESIDUE EDO A 380
08AC8SOFTWARESER A:17 , PHE A:18 , ASN A:19 , SER A:30 , ASN A:34 , ARG A:37 , HOH A:506 , HOH A:557BINDING SITE FOR RESIDUE EDO A 381
09AC9SOFTWARELYS A:124 , ARG A:128 , FMT A:384 , FMT A:385BINDING SITE FOR RESIDUE FMT A 382
10BC1SOFTWAREPRO A:9 , LEU A:10 , LYS A:124 , HOH A:449BINDING SITE FOR RESIDUE FMT A 383
11BC2SOFTWAREASP A:49 , LEU A:50 , CYS A:52 , TYR A:125 , ARG A:128 , FMT A:382 , FMT A:385BINDING SITE FOR RESIDUE FMT A 384
12BC3SOFTWARELEU A:46 , PHE A:47 , ASP A:49 , LEU A:50 , CYS A:52 , TRP A:121 , FMT A:382 , FMT A:384BINDING SITE FOR RESIDUE FMT A 385
13BC4SOFTWARETYR A:122 , HOH A:570 , HOH A:714 , HOH A:826BINDING SITE FOR RESIDUE FMT A 386
14BC5SOFTWARESER A:17 , TYR A:21 , HOH A:450 , HOH A:491 , HOH A:614BINDING SITE FOR RESIDUE FMT A 387
15BC6SOFTWAREASP A:265 , HOH A:452 , HOH A:560 , HOH A:809BINDING SITE FOR RESIDUE FMT A 388
16BC7SOFTWARECYS A:288 , LYS A:289 , LYS A:302 , PRO A:303 , SER A:304 , HOH A:605BINDING SITE FOR RESIDUE FMT A 389
17BC8SOFTWARELYS A:222 , HIS A:225 , HOH A:451 , HOH A:552 , HOH A:773BINDING SITE FOR RESIDUE FMT A 390
18BC9SOFTWAREARG A:37 , SER A:38 , HOH A:446BINDING SITE FOR RESIDUE FMT A 391
19CC1SOFTWAREGLY A:207 , LEU A:208 , LYS A:345 , ALA A:346 , ASN A:347 , HOH A:729BINDING SITE FOR RESIDUE FMT A 392

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3R9M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3R9M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3R9M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3R9M)

(-) Exons   (0, 0)

(no "Exon" information available for 3R9M)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:376
 aligned with BROX_HUMAN | Q5VW32 from UniProtKB/Swiss-Prot  Length:411

    Alignment length:376
                              1                                                                                                                                                                                                                                                                                                                                                                                     
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368      
           BROX_HUMAN     - --MTHWFHRNPLKATAPVSFNYYGVVTGPSASKICNDLRSSRARLLELFTDLSCNPEMMKNAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKESHLPKLITPAEKGRDLESRLIEAYVIQCQAEAQEVTIARAIELKHAPGLIAALAYETANFYQKADHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKCGEAIRSLQEAEKLYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQRENGFIYFQKIPTEAPQLELKANYGLVEPIPFEFPPTSVQWTPETLAAFD 374
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhh.hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh.................eee.........eee.hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................................hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r9m A  -3 GVDTHWFHRNPLKATAPVSFNYYGVVTGPSASKICNDLRSSRARLLELFTDLSCNPEMMKNAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKESHLPKLITPAEKGRDLESRLIEAYVIQCQAEAQEVTIARAIELKHAPGLIAALAYETANFYQKADHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKCGEAIRSLQEAEKLYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQRENGFIYFQKIPTEAPQLELKANYGLVEPIPFEFPPTSVQWTPETLAAFD 374
                              ||     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368      
                             -1|                                                                                                                                                                                                                                                                                                                                                                                    
                               2
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3R9M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3R9M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3R9M)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (BROX_HUMAN | Q5VW32)
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BROX_HUMAN | Q5VW32: 3uly 3um0 3um1 3um2 3um3 3zxp

(-) Related Entries Specified in the PDB File

3rau