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(-) Description

Title :  CRYSTAL STRUCTURE OF MALIGNANT T CELL-AMPLIFIED SEQUENCE 1 PROTEIN
 
Authors :  B. Hong, S. Dimov, W. Tempel, Y. Tong, A. K. Wernimont, C. H. Arrowsmith, A. M. Edwards, C. Bountra, J. Weigelt, H. Park, Structural Genomics Consortium (Sgc)
Date :  24 Mar 11  (Deposition) - 13 Apr 11  (Release) - 13 Apr 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Structural Genomics Consortium, Surface Entropy Reduction, Sgc, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Hong, S. Dimov, W. Tempel, Y. Tong, A. K. Wernimont, C. H. Arrowsmith A. M. Edwards, C. Bountra, J. Weigelt, H. Park
Crystal Structure Of Malignant T Cell-Amplified Sequence 1 Protein
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MALIGNANT T CELL-AMPLIFIED SEQUENCE 1
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PNIC-CH
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: MCTS1, MCT1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MCT-1, MULTIPLE COPIES T-CELL MALIGNANCIES

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 200)

Asymmetric/Biological Unit (3, 200)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2SO425Ligand/IonSULFATE ION
3UNX174Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (26, 26)

Asymmetric Unit (26, 26)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREMET A:1 , PHE A:2 , LYS A:3 , HOH A:526BINDING SITE FOR RESIDUE SO4 A 189
02AC2SOFTWARELYS A:3 , SER A:107 , HOH A:567 , ARG G:83 , LYS G:178 , HOH G:496BINDING SITE FOR RESIDUE SO4 A 190
03AC3SOFTWAREARG A:83 , LYS A:178 , HOH A:529 , LYS G:3 , SER G:107 , GLN H:42BINDING SITE FOR RESIDUE SO4 A 191
04AC4SOFTWAREARG B:83 , LYS B:178 , HOH B:550 , HOH B:1089 , GLN G:42 , LYS L:3 , SER L:107BINDING SITE FOR RESIDUE SO4 B 189
05AC5SOFTWAREMET B:1 , PHE B:2 , LYS B:3 , HOH B:953 , HOH B:1248BINDING SITE FOR RESIDUE SO4 B 190
06AC6SOFTWARELYS B:3 , SER B:107 , HOH B:929 , TRP C:39 , GLN C:42 , ARG L:83 , LYS L:178BINDING SITE FOR RESIDUE SO4 C 189
07AC7SOFTWAREARG C:83 , LYS C:178 , HOH C:1190 , LYS K:3 , SER K:107 , TRP L:39 , GLN L:42BINDING SITE FOR RESIDUE SO4 C 190
08AC8SOFTWAREARG D:83 , TRP D:175 , LYS D:178 , LYS J:3 , SER J:107 , HOH J:609 , GLN K:42 , HOH K:1257BINDING SITE FOR RESIDUE SO4 D 189
09AC9SOFTWAREMET D:1 , PHE D:2 , LYS D:3 , HOH D:878 , HOH D:967BINDING SITE FOR RESIDUE SO4 D 190
10BC1SOFTWAREMET E:1 , PHE E:2 , LYS E:3 , HOH E:728BINDING SITE FOR RESIDUE SO4 E 189
11BC2SOFTWAREARG E:83 , LYS E:178 , HOH E:1123 , LYS I:3 , SER I:107 , HOH I:625 , GLN J:42BINDING SITE FOR RESIDUE SO4 E 190
12BC3SOFTWAREARG F:83 , TRP F:175 , LYS F:178 , HOH F:346 , HOH F:1417 , HOH F:1420 , LYS H:3 , SER H:107 , TRP I:39 , GLN I:42BINDING SITE FOR RESIDUE SO4 F 189
13BC4SOFTWAREMET F:1 , PHE F:2 , LYS F:3 , HOH F:211 , HOH F:403 , HOH F:1031BINDING SITE FOR RESIDUE SO4 F 190
14BC5SOFTWARELYS E:3 , SER E:107 , TRP F:39 , GLN F:42 , HOH F:486 , ARG I:83 , LYS I:178BINDING SITE FOR RESIDUE SO4 F 191
15BC6SOFTWAREMET G:1 , PHE G:2 , LYS G:3 , HOH G:427 , HOH G:489 , HOH G:683 , HOH G:1072 , HOH G:1073BINDING SITE FOR RESIDUE SO4 G 189
16BC7SOFTWAREMET H:1 , PHE H:2 , LYS H:3 , HOH H:316 , HOH H:580BINDING SITE FOR RESIDUE SO4 H 189
17BC8SOFTWAREGLN A:42 , LYS F:3 , SER F:107 , HOH F:199 , ARG H:83 , LYS H:178 , HOH H:395BINDING SITE FOR RESIDUE SO4 H 190
18BC9SOFTWAREMET I:1 , PHE I:2 , LYS I:3 , HOH I:472 , HOH I:1259BINDING SITE FOR RESIDUE SO4 I 189
19CC1SOFTWAREMET J:1 , PHE J:2 , LYS J:3 , HOH J:483 , HOH J:1006BINDING SITE FOR RESIDUE SO4 J 189
20CC2SOFTWARELYS D:3 , HOH D:971 , TRP E:39 , GLN E:42 , ARG J:83 , LYS J:178 , HOH J:970BINDING SITE FOR RESIDUE SO4 J 190
21CC3SOFTWAREMET K:1 , PHE K:2 , LYS K:3 , HOH K:385 , HOH K:397 , HOH K:819 , HOH K:1167BINDING SITE FOR RESIDUE SO4 K 189
22CC4SOFTWARELYS H:18 , ILE K:15 , ARG K:54 , HOH K:307BINDING SITE FOR RESIDUE SO4 K 190
23CC5SOFTWARELYS C:3 , SER C:107 , TRP D:39 , GLN D:42 , ARG K:83 , TRP K:175 , LYS K:178 , HOH K:1269BINDING SITE FOR RESIDUE SO4 K 191
24CC6SOFTWARELYS C:87 , GLU L:67 , ARG L:83 , LYS L:87 , LYS L:178 , HOH L:714BINDING SITE FOR RESIDUE SO4 L 189
25CC7SOFTWAREMET L:1 , PHE L:2 , LYS L:3 , HOH L:750 , HOH L:1212 , HOH L:1272 , HOH L:1274BINDING SITE FOR RESIDUE SO4 L 190
26CC8SOFTWAREILE F:25 , ILE F:52 , ARG F:72 , HOH F:422 , ASP L:154 , HOH L:652BINDING SITE FOR RESIDUE GOL L 191

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3R90)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3R90)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 12)

Asymmetric/Biological Unit (1, 12)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_045632L106HMCTS1_HUMANPolymorphism2233110A/B/C/D/E/F/G/H/I/J/K/LL106H
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 12)

Asymmetric/Biological Unit (1, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PUAPS50890 PUA domain profile.MCTS1_HUMAN92-171
 
 
 
 
 
 
 
 
 
 
 		  12A:92-171
B:92-171
C:92-171
D:92-171
E:92-171
F:92-171
G:92-171
H:92-171
I:92-171
J:92-171
K:92-171
L:92-171

(-) Exons   (0, 0)

(no "Exon" information available for 3R90)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:185
 aligned with MCTS1_HUMAN | Q9ULC4 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:185
                                                                                                                                                                                                              181    
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180|    
          MCTS1_HUMAN     1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK----   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhheeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee...eeeeee..eeeeeee.....eehhhhhhhhhhhh.eeeehhhhhhhhh....eehhhhhh............eeeeee.......eeeee..hhhhhhhhh..eeeeeeee..hhhhhhh..hhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------H------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------PUA  PDB: A:92-171 UniProt: 92-171                                              -------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r90 A   1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAAGAAHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYKAHHH 185
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180     


Chain B from PDB  Type:PROTEIN  Length:185
 aligned with MCTS1_HUMAN | Q9ULC4 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:185
                                                                                                                                                                                                              181    
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180|    
          MCTS1_HUMAN     1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK----   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhheeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee...eeeeee..eeeeeee.....eehhhhhhhhhhhh.eeeehhhhhhhhh....eehhhhhh............eeeeee.......eeeee..hhhhhhhhh..eeeeeeee..hhhhhhh..hhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------H------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------PUA  PDB: B:92-171 UniProt: 92-171                                              -------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r90 B   1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAAGAAHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYKAHHH 185
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180     


Chain C from PDB  Type:PROTEIN  Length:185
 aligned with MCTS1_HUMAN | Q9ULC4 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:185
                                                                                                                                                                                                              181    
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180|    
          MCTS1_HUMAN     1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK----   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhheeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee...eeeeee..eeeeeee.....eehhhhhhhhhhhh.eee.hhhhhhhhh....eehhhhh.............eeeee........eeeee..hhhhhhhhh..eeeeeeee..hhhhhhh..hhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------H------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------PUA  PDB: C:92-171 UniProt: 92-171                                              -------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r90 C   1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAAGAAHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYKAHHH 185
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180     


Chain D from PDB  Type:PROTEIN  Length:180
 aligned with MCTS1_HUMAN | Q9ULC4 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:180
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180
          MCTS1_HUMAN     1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTY 180
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee...eeeeee..eeeeeee.....eehhhhhhhh.....eee....hhhhhh....eehhhhhh............eeeee........eeeee..hhhhhhhhh..eeeeeeee..hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------H-------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------PUA  PDB: D:92-171 UniProt: 92-171                                              --------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3r90 D   1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAAGAAHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTY 180
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180


Chain E from PDB  Type:PROTEIN  Length:181
 aligned with MCTS1_HUMAN | Q9ULC4 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:181
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180 
          MCTS1_HUMAN     1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK 181
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhheeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee...eeeeee..eeeeeee.....eehhhhhhhhhhhh.eeeehhhhhhhhh....eehhhhhh............eeeeee..eeeeeeeeee..hhhhhhhhh..eeeeeeee..hhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------H--------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------PUA  PDB: E:92-171 UniProt: 92-171                                              ---------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r90 E   1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAAGAAHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK 181
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180 


Chain F from PDB  Type:PROTEIN  Length:181
 aligned with MCTS1_HUMAN | Q9ULC4 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:181
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180 
          MCTS1_HUMAN     1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK 181
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee...eeeeee..eeeeeee.....eehhhhhhhhhhhh.eeeehhhhhhhhh....eehhhhhh............eeeeee.......eeeee..hhhhhhhhh..eeeeeeee..hhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------H--------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------PUA  PDB: F:92-171 UniProt: 92-171                                              ---------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r90 F   1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAAGAAHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK 181
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180 


Chain G from PDB  Type:PROTEIN  Length:181
 aligned with MCTS1_HUMAN | Q9ULC4 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:181
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180 
          MCTS1_HUMAN     1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK 181
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhheeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee...eeeeee..eeeeeee.....eehhhhhhhhhhhh.eeeehhhhhhhhh....eehhhhhh............eeeeee.......eeeee..hhhhhhhhh..eeeeeeee..hhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------H--------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------PUA  PDB: G:92-171 UniProt: 92-171                                              ---------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r90 G   1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAAGAAHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK 181
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180 


Chain H from PDB  Type:PROTEIN  Length:180
 aligned with MCTS1_HUMAN | Q9ULC4 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:180
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180
          MCTS1_HUMAN     1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTY 180
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhheeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee...eeeeee..eeeeeee.....eehhhhhhhhhhhh.eeeehhhhhhhhh....eehhhhhh............eeeeee.......eeeee..hhhhhhhhh..eeeeeeee..hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------H-------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------PUA  PDB: H:92-171 UniProt: 92-171                                              --------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3r90 H   1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAAGAAHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTY 180
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180


Chain I from PDB  Type:PROTEIN  Length:187
 aligned with MCTS1_HUMAN | Q9ULC4 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:187
                                                                                                                                                                                                              181      
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180|      
          MCTS1_HUMAN     1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK------   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee...eeeeee..eeeeeee.....eehhhhhhhhhhhh.eeee...hhhhhh....ee.hhh..............eeeeee.......eeeee..hhhhhhhhh..eeeeeeee..hhhhhhh..hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------H--------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------PUA  PDB: I:92-171 UniProt: 92-171                                              ---------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r90 I   1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAAGAAHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYKAHHHHH 187
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       


Chain J from PDB  Type:PROTEIN  Length:188
 aligned with MCTS1_HUMAN | Q9ULC4 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:188
                                                                                                                                                                                                              181       
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180|       
          MCTS1_HUMAN     1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK-------   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee...eeeeee..eeeeeee.....eehhhhhhhhhhhh.eee.hhhhhhhhh....eehhhhhh............eeeee........eeeee..hhhhhhhhh..eeeeeeee..hhhhhhh..hhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------H---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------PUA  PDB: J:92-171 UniProt: 92-171                                              ----------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r90 J   1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAAGAAHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYKAHHHHHH 188
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180        


Chain K from PDB  Type:PROTEIN  Length:188
 aligned with MCTS1_HUMAN | Q9ULC4 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:188
                                                                                                                                                                                                              181       
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180|       
          MCTS1_HUMAN     1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK-------   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeee.hhhhhhhhhhhhhhhhhhhh.hhhhhh.....eeeeee...eeeeee..eeeeeee.....eehhhhhhhhhhhh.eeee...hhhhhh....eehhhhhh............eeeeee.......eeeee..hhhhhhhhh..eeeeeeee..hhhhhhh..hhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------H---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------PUA  PDB: K:92-171 UniProt: 92-171                                              ----------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r90 K   1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAAGAAHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYKAHHHHHH 188
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180        


Chain L from PDB  Type:PROTEIN  Length:180
 aligned with MCTS1_HUMAN | Q9ULC4 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:180
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180
          MCTS1_HUMAN     1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTY 180
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) --------------------------------------------------------------------------------------------PUA-3r90L01 L:93-170                                                          ---------- Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------------------------------------------PUA-3r90L02 L:93-170                                                          ---------- Pfam domains (2)
           Pfam domains (3) --------------------------------------------------------------------------------------------PUA-3r90L03 L:93-170                                                          ---------- Pfam domains (3)
           Pfam domains (4) --------------------------------------------------------------------------------------------PUA-3r90L04 L:93-170                                                          ---------- Pfam domains (4)
           Pfam domains (5) --------------------------------------------------------------------------------------------PUA-3r90L05 L:93-170                                                          ---------- Pfam domains (5)
           Pfam domains (6) --------------------------------------------------------------------------------------------PUA-3r90L06 L:93-170                                                          ---------- Pfam domains (6)
           Pfam domains (7) --------------------------------------------------------------------------------------------PUA-3r90L07 L:93-170                                                          ---------- Pfam domains (7)
           Pfam domains (8) --------------------------------------------------------------------------------------------PUA-3r90L08 L:93-170                                                          ---------- Pfam domains (8)
           Pfam domains (9) --------------------------------------------------------------------------------------------PUA-3r90L09 L:93-170                                                          ---------- Pfam domains (9)
          Pfam domains (10) --------------------------------------------------------------------------------------------PUA-3r90L10 L:93-170                                                          ---------- Pfam domains (10)
          Pfam domains (11) --------------------------------------------------------------------------------------------PUA-3r90L11 L:93-170                                                          ---------- Pfam domains (11)
          Pfam domains (12) --------------------------------------------------------------------------------------------PUA-3r90L12 L:93-170                                                          ---------- Pfam domains (12)
         Sec.struct. author .....hhhhheeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee...eeeeee..eeeeeee.....eehhhhhhhhhhhh.eee.hhhhhhhhh....eehhhhhh............eeeee........eeeee..hhhhhhhhh..eeeeeeee..hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------H-------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------PUA  PDB: L:92-171 UniProt: 92-171                                              --------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3r90 L   1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAAGAAHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTY 180
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3R90)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3R90)

(-) Pfam Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Clan: PUA (42)
(-)
Family: PUA (12)
(-)
Homo sapiens (Human) (1)
1aPUA-3r90L01L:93-170
1bPUA-3r90L02L:93-170
1cPUA-3r90L03L:93-170
1dPUA-3r90L04L:93-170
1ePUA-3r90L05L:93-170
1fPUA-3r90L06L:93-170
1gPUA-3r90L07L:93-170
1hPUA-3r90L08L:93-170
1iPUA-3r90L09L:93-170
1jPUA-3r90L10L:93-170
1kPUA-3r90L11L:93-170
1lPUA-3r90L12L:93-170

(-) Gene Ontology  (16, 16)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (MCTS1_HUMAN | Q9ULC4)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0003743    translation initiation factor activity    Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
biological process
    GO:0002192    IRES-dependent translational initiation of linear mRNA    The process where translation initiation recruits the 40S ribosomal subunits via an internal ribosome entry segment (IRES) before an AUG codon is encountered in an appropriate sequence context to initiate linear mRNA translation.
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
    GO:0001731    formation of translation preinitiation complex    The joining of the small ribosomal subunit, ternary complex, and mRNA.
    GO:0008284    positive regulation of cell proliferation    Any process that activates or increases the rate or extent of cell proliferation.
    GO:0040008    regulation of growth    Any process that modulates the frequency, rate or extent of the growth of all or part of an organism so that it occurs at its proper speed, either globally or in a specific part of the organism's development.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0032790    ribosome disassembly    The disaggregation of a ribosome into its constituent components; includes the dissociation of ribosomal subunits.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
    GO:0006413    translational initiation    The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0022627    cytosolic small ribosomal subunit    The small subunit of a ribosome located in the cytosol.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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  3r90
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