3R84 - JenaLib

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:81
 aligned with MED11_YEAST | Q99278 from UniProtKB/Swiss-Prot  Length:115

    Alignment length:81
                                    13        23        33        43        53        63        73        83 
           MED11_YEAST    4 PYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGTRLLPI 84
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                  3r84 A  4 GYIQERLKSLNDIETQLCSmLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGTRLLPI 84
                                    13        23        33        43        53        63        73        83 
                                              23-MSE

Chain B from PDB  Type:PROTEIN  Length:80
 aligned with MED22_YEAST | P32570 from UniProtKB/Swiss-Prot  Length:121

    Alignment length:88
                                    11        21        31        41        51        61        71        81        
           MED22_YEAST    2 SNQALYEKLEQTRTILSVKLAELINMTTIADRNDDDEGSFAQENSELAVATTSVMMVNNQTMQLIKNVQDLLILTRSIKEKWLLNQIP 89
               SCOP domains ---------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh......--------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  3r84 B  2 SNQALYEKLEQTRTILSVKLAELINITTIAD--------FAQENSELAVATTSVmmVNNQTmQLIKNVQDLLILTRSIKEKWLLNQIP 89
                                    11        21        31|       41        51    ||  61 |      71        81        
                                                         32       41             56-MSE  |                          
                                                                                  57-MSE |                          
                                                                                        63-MSE

Chain C from PDB  Type:PROTEIN  Length:80
 aligned with MED11_YEAST | Q99278 from UniProtKB/Swiss-Prot  Length:115

    Alignment length:80
                                    13        23        33        43        53        63        73        83
           MED11_YEAST    4 PYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGTRLLP 83
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                  3r84 C  4 GYIQERLKSLNDIETQLCSmLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGTRLLP 83
                                    13        23        33        43        53        63        73        83
                                              23-MSE

Chain D from PDB  Type:PROTEIN  Length:79
 aligned with MED22_YEAST | P32570 from UniProtKB/Swiss-Prot  Length:121

    Alignment length:88
                                    10        20        30        40        50        60        70        80        
           MED22_YEAST    1 MSNQALYEKLEQTRTILSVKLAELINMTTIADRNDDDEGSFAQENSELAVATTSVMMVNNQTMQLIKNVQDLLILTRSIKEKWLLNQI 88
               SCOP domains ---------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh......---------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  3r84 D  1 mSNQALYEKLEQTRTILSVKLAELINITTIAD---------AQENSELAVATTSVmmVNNQTmQLIKNVQDLLILTRSIKEKWLLNQI 88
                            |       10        20        30 |       - |      50     || 60  |     70        80        
                            1-MSE                         32        42            56-MSE  |                         
                                                                                   57-MSE |                         
                                                                                         63-MSE

Chain E from PDB  Type:PROTEIN  Length:73
 aligned with MED11_YEAST | Q99278 from UniProtKB/Swiss-Prot  Length:115

    Alignment length:73
                                    13        23        33        43        53        63        73   
           MED11_YEAST    4 PYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDEN 76
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                  3r84 E  4 GYIQERLKSLNDIETQLCSmLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDEN 76
                                    13        23        33        43        53        63        73   
                                              23-MSE

Chain F from PDB  Type:PROTEIN  Length:77
 aligned with MED22_YEAST | P32570 from UniProtKB/Swiss-Prot  Length:121

    Alignment length:86
                                    11        21        31        41        51        61        71        81      
           MED22_YEAST    2 SNQALYEKLEQTRTILSVKLAELINMTTIADRNDDDEGSFAQENSELAVATTSVMMVNNQTMQLIKNVQDLLILTRSIKEKWLLNQ 87
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh......---------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                  3r84 F  2 SNQALYEKLEQTRTILSVKLAELINITTIAD---------AQENSELAVATTSVmmVNNQTmQLIKNVQDLLILTRSIKEKWLLNQ 87
                                    11        21        31|        -|       51    ||  61 |      71        81      
                                                         32        42            56-MSE  |                        
                                                                                  57-MSE |                        
                                                                                        63-MSE

Chain G from PDB  Type:PROTEIN  Length:79
 aligned with MED11_YEAST | Q99278 from UniProtKB/Swiss-Prot  Length:115

    Alignment length:79
                                    13        23        33        43        53        63        73         
           MED11_YEAST    4 PYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGTRLL 82
               SCOP domains ------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                  3r84 G  4 GYIQERLKSLNDIETQLCSmLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGTRLL 82
                                    13        23        33        43        53        63        73         
                                              23-MSE

Chain H from PDB  Type:PROTEIN  Length:79
 aligned with MED22_YEAST | P32570 from UniProtKB/Swiss-Prot  Length:121

    Alignment length:88
                                    10        20        30        40        50        60        70        80        
           MED22_YEAST    1 MSNQALYEKLEQTRTILSVKLAELINMTTIADRNDDDEGSFAQENSELAVATTSVMMVNNQTMQLIKNVQDLLILTRSIKEKWLLNQI 88
               SCOP domains ---------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh......---------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  3r84 H  1 mSNQALYEKLEQTRTILSVKLAELINITTIAD---------AQENSELAVATTSVmmVNNQTmQLIKNVQDLLILTRSIKEKWLLNQI 88
                            |       10        20        30 |       - |      50     || 60  |     70        80        
                            1-MSE                         32        42            56-MSE  |                         
                                                                                   57-MSE |                         
                                                                                         63-MSE

Chain I from PDB  Type:PROTEIN  Length:80
 aligned with MED11_YEAST | Q99278 from UniProtKB/Swiss-Prot  Length:115

    Alignment length:80
                                    13        23        33        43        53        63        73        83
           MED11_YEAST    4 PYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGTRLLP 83
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                  3r84 I  4 GYIQERLKSLNDIETQLCSmLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGTRLLP 83
                                    13        23        33        43        53        63        73        83
                                              23-MSE

Chain J from PDB  Type:PROTEIN  Length:79
 aligned with MED22_YEAST | P32570 from UniProtKB/Swiss-Prot  Length:121

    Alignment length:88
                                    11        21        31        41        51        61        71        81        
           MED22_YEAST    2 SNQALYEKLEQTRTILSVKLAELINMTTIADRNDDDEGSFAQENSELAVATTSVMMVNNQTMQLIKNVQDLLILTRSIKEKWLLNQIP 89
               SCOP domains ---------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh......---------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  3r84 J  2 SNQALYEKLEQTRTILSVKLAELINITTIAD---------AQENSELAVATTSVmmVNNQTmQLIKNVQDLLILTRSIKEKWLLNQIP 89
                                    11        21        31|        -|       51    ||  61 |      71        81        
                                                         32        42            56-MSE  |                          
                                                                                  57-MSE |                          
                                                                                        63-MSE

Chain K from PDB  Type:PROTEIN  Length:80
 aligned with MED11_YEAST | Q99278 from UniProtKB/Swiss-Prot  Length:115

    Alignment length:80
                                    13        23        33        43        53        63        73        83
           MED11_YEAST    4 PYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGTRLLP 83
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                  3r84 K  4 GYIQERLKSLNDIETQLCSmLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGTRLLP 83
                                    13        23        33        43        53        63        73        83
                                              23-MSE

Chain L from PDB  Type:PROTEIN  Length:79
 aligned with MED22_YEAST | P32570 from UniProtKB/Swiss-Prot  Length:121

    Alignment length:88
                                    11        21        31        41        51        61        71        81        
           MED22_YEAST    2 SNQALYEKLEQTRTILSVKLAELINMTTIADRNDDDEGSFAQENSELAVATTSVMMVNNQTMQLIKNVQDLLILTRSIKEKWLLNQIP 89
               SCOP domains ---------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh......---------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  3r84 L  2 SNQALYEKLEQTRTILSVKLAELINITTIAD---------AQENSELAVATTSVmmVNNQTmQLIKNVQDLLILTRSIKEKWLLNQIP 89
                                    11        21        31|        -|       51    ||  61 |      71        81        
                                                         32        42            56-MSE  |                          
                                                                                  57-MSE |                          
                                                                                        63-MSE

Chain M from PDB  Type:PROTEIN  Length:80
 aligned with MED11_YEAST | Q99278 from UniProtKB/Swiss-Prot  Length:115

    Alignment length:80
                                    13        23        33        43        53        63        73        83
           MED11_YEAST    4 PYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGTRLLP 83
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                  3r84 M  4 GYIQERLKSLNDIETQLCSmLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGTRLLP 83
                                    13        23        33        43        53        63        73        83
                                              23-MSE

Chain N from PDB  Type:PROTEIN  Length:80
 aligned with MED22_YEAST | P32570 from UniProtKB/Swiss-Prot  Length:121

    Alignment length:89
                                    10        20        30        40        50        60        70        80         
           MED22_YEAST    1 MSNQALYEKLEQTRTILSVKLAELINMTTIADRNDDDEGSFAQENSELAVATTSVMMVNNQTMQLIKNVQDLLILTRSIKEKWLLNQIP 89
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh......---------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                  3r84 N  1 mSNQALYEKLEQTRTILSVKLAELINITTIAD---------AQENSELAVATTSVmmVNNQTmQLIKNVQDLLILTRSIKEKWLLNQIP 89
                            |       10        20        30 |       - |      50     || 60  |     70        80         
                            1-MSE                         32        42            56-MSE  |                          
                                                                                   57-MSE |                          
                                                                                         63-MSE

Chain O from PDB  Type:PROTEIN  Length:76
 aligned with MED11_YEAST | Q99278 from UniProtKB/Swiss-Prot  Length:115

    Alignment length:76
                                    13        23        33        43        53        63        73      
           MED11_YEAST    4 PYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGT 79
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                  3r84 O  4 GYIQERLKSLNDIETQLCSmLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGT 79
                                    13        23        33        43        53        63        73      
                                              23-MSE

Chain P from PDB  Type:PROTEIN  Length:77
 aligned with MED22_YEAST | P32570 from UniProtKB/Swiss-Prot  Length:121

    Alignment length:86
                                    11        21        31        41        51        61        71        81      
           MED22_YEAST    2 SNQALYEKLEQTRTILSVKLAELINMTTIADRNDDDEGSFAQENSELAVATTSVMMVNNQTMQLIKNVQDLLILTRSIKEKWLLNQ 87
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh......---------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                  3r84 P  2 SNQALYEKLEQTRTILSVKLAELINITTIAD---------AQENSELAVATTSVmmVNNQTmQLIKNVQDLLILTRSIKEKWLLNQ 87
                                    11        21        31|        -|       51    ||  61 |      71        81      
                                                         32        42            56-MSE  |                        
                                                                                  57-MSE |                        
                                                                                        63-MSE

Chain Q from PDB  Type:PROTEIN  Length:80
 aligned with MED11_YEAST | Q99278 from UniProtKB/Swiss-Prot  Length:115

    Alignment length:80
                                    13        23        33        43        53        63        73        83
           MED11_YEAST    4 PYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGTRLLP 83
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                  3r84 Q  4 GYIQERLKSLNDIETQLCSmLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGTRLLP 83
                                    13        23        33        43        53        63        73        83
                                              23-MSE

Chain R from PDB  Type:PROTEIN  Length:79
 aligned with MED22_YEAST | P32570 from UniProtKB/Swiss-Prot  Length:121

    Alignment length:88
                                    11        21        31        41        51        61        71        81        
           MED22_YEAST    2 SNQALYEKLEQTRTILSVKLAELINMTTIADRNDDDEGSFAQENSELAVATTSVMMVNNQTMQLIKNVQDLLILTRSIKEKWLLNQIP 89
               SCOP domains ---------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh......---------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  3r84 R  2 SNQALYEKLEQTRTILSVKLAELINITTIAD---------AQENSELAVATTSVmmVNNQTmQLIKNVQDLLILTRSIKEKWLLNQIP 89
                                    11        21        31|        -|       51    ||  61 |      71        81        
                                                         32        42            56-MSE  |                          
                                                                                  57-MSE |                          
                                                                                        63-MSE

Chain S from PDB  Type:PROTEIN  Length:81
 aligned with MED11_YEAST | Q99278 from UniProtKB/Swiss-Prot  Length:115

    Alignment length:81
                                    13        23        33        43        53        63        73        83 
           MED11_YEAST    4 PYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGTRLLPI 84
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                  3r84 S  4 GYIQERLKSLNDIETQLCSmLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGTRLLPI 84
                                    13        23        33        43        53        63        73        83 
                                              23-MSE

Chain T from PDB  Type:PROTEIN  Length:79
 aligned with MED22_YEAST | P32570 from UniProtKB/Swiss-Prot  Length:121

    Alignment length:88
                                    11        21        31        41        51        61        71        81        
           MED22_YEAST    2 SNQALYEKLEQTRTILSVKLAELINMTTIADRNDDDEGSFAQENSELAVATTSVMMVNNQTMQLIKNVQDLLILTRSIKEKWLLNQIP 89
               SCOP domains ---------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh......---------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  3r84 T  2 SNQALYEKLEQTRTILSVKLAELINITTIAD---------AQENSELAVATTSVmmVNNQTmQLIKNVQDLLILTRSIKEKWLLNQIP 89
                                    11        21        31|        -|       51    ||  61 |      71        81        
                                                         32        42            56-MSE  |                          
                                                                                  57-MSE |                          
                                                                                        63-MSE

Chain U from PDB  Type:PROTEIN  Length:81
 aligned with MED11_YEAST | Q99278 from UniProtKB/Swiss-Prot  Length:115

    Alignment length:81
                                    13        23        33        43        53        63        73        83 
           MED11_YEAST    4 PYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGTRLLPI 84
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                  3r84 U  4 GYIQERLKSLNDIETQLCSmLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGTRLLPI 84
                                    13        23        33        43        53        63        73        83 
                                              23-MSE

Chain V from PDB  Type:PROTEIN  Length:81
 aligned with MED22_YEAST | P32570 from UniProtKB/Swiss-Prot  Length:121

    Alignment length:88
                                    11        21        31        41        51        61        71        81        
           MED22_YEAST    2 SNQALYEKLEQTRTILSVKLAELINMTTIADRNDDDEGSFAQENSELAVATTSVMMVNNQTMQLIKNVQDLLILTRSIKEKWLLNQIP 89
               SCOP domains ---------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh......-------..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  3r84 V  2 SNQALYEKLEQTRTILSVKLAELINITTIAD-------SFAQENSELAVATTSVmmVNNQTmQLIKNVQDLLILTRSIKEKWLLNQIP 89
                                    11        21        31|       41        51    ||  61 |      71        81        
                                                         32      40              56-MSE  |                          
                                                                                  57-MSE |                          
                                                                                        63-MSE

Chain W from PDB  Type:PROTEIN  Length:73
 aligned with MED11_YEAST | Q99278 from UniProtKB/Swiss-Prot  Length:115

    Alignment length:73
                                    13        23        33        43        53        63        73   
           MED11_YEAST    4 PYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDEN 76
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------Med11-3r84W01 W:22-76                                   Pfam domains (1)
           Pfam domains (2) ------------------Med11-3r84W02 W:22-76                                   Pfam domains (2)
           Pfam domains (3) ------------------Med11-3r84W03 W:22-76                                   Pfam domains (3)
           Pfam domains (4) ------------------Med11-3r84W04 W:22-76                                   Pfam domains (4)
           Pfam domains (5) ------------------Med11-3r84W05 W:22-76                                   Pfam domains (5)
           Pfam domains (6) ------------------Med11-3r84W06 W:22-76                                   Pfam domains (6)
           Pfam domains (7) ------------------Med11-3r84W07 W:22-76                                   Pfam domains (7)
           Pfam domains (8) ------------------Med11-3r84W08 W:22-76                                   Pfam domains (8)
           Pfam domains (9) ------------------Med11-3r84W09 W:22-76                                   Pfam domains (9)
          Pfam domains (10) ------------------Med11-3r84W10 W:22-76                                   Pfam domains (10)
          Pfam domains (11) ------------------Med11-3r84W11 W:22-76                                   Pfam domains (11)
          Pfam domains (12) ------------------Med11-3r84W12 W:22-76                                   Pfam domains (12)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                  3r84 W  4 GYIQERLKSLNDIETQLCSmLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDEN 76
                                    13        23        33        43        53        63        73   
                                              23-MSE

Chain X from PDB  Type:PROTEIN  Length:78
 aligned with MED22_YEAST | P32570 from UniProtKB/Swiss-Prot  Length:121

    Alignment length:86
                                    11        21        31        41        51        61        71        81      
           MED22_YEAST    2 SNQALYEKLEQTRTILSVKLAELINMTTIADRNDDDEGSFAQENSELAVATTSVMMVNNQTMQLIKNVQDLLILTRSIKEKWLLNQ 87
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----Med22-3r84X01 X:6-87                                                               Pfam domains (1)
           Pfam domains (2) ----Med22-3r84X02 X:6-87                                                               Pfam domains (2)
           Pfam domains (3) ----Med22-3r84X03 X:6-87                                                               Pfam domains (3)
           Pfam domains (4) ----Med22-3r84X04 X:6-87                                                               Pfam domains (4)
           Pfam domains (5) ----Med22-3r84X05 X:6-87                                                               Pfam domains (5)
           Pfam domains (6) ----Med22-3r84X06 X:6-87                                                               Pfam domains (6)
           Pfam domains (7) ----Med22-3r84X07 X:6-87                                                               Pfam domains (7)
           Pfam domains (8) ----Med22-3r84X08 X:6-87                                                               Pfam domains (8)
           Pfam domains (9) ----Med22-3r84X09 X:6-87                                                               Pfam domains (9)
          Pfam domains (10) ----Med22-3r84X10 X:6-87                                                               Pfam domains (10)
          Pfam domains (11) ----Med22-3r84X11 X:6-87                                                               Pfam domains (11)
          Pfam domains (12) ----Med22-3r84X12 X:6-87                                                               Pfam domains (12)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh......--------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                  3r84 X  2 SNQALYEKLEQTRTILSVKLAELINITTIAD--------FAQENSELAVATTSVmmVNNQTmQLIKNVQDLLILTRSIKEKWLLNQ 87
                                    11        21        31|       41        51    ||  61 |      71        81      
                                                         32       41             56-MSE  |                        
                                                                                  57-MSE |                        
                                                                                        63-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit(hide GO term definitions)

Chain A,C,E,G,I,K,M,O,Q,S,U,W (MED11_YEAST | Q99278)

molecular function
	GO:0001104	RNA polymerase II transcription cofactor activity	Interacting selectively and non-covalently with an RNA polymerase II (RNAP II) regulatory transcription factor and also with the RNAP II basal transcription machinery in order to modulate transcription. Cofactors generally do not bind DNA, but rather mediate protein-protein interactions between regulatory transcription factors and the basal RNAP II transcription machinery.
	GO:0001097	TFIIH-class transcription factor binding	Interacting selectively and non-covalently with a basal RNA polymerase II transcription factor of the TFIIH class, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II and defined as a basal or general transcription factor.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0001138	transcription factor activity, TFIIH-class transcription factor recruiting	Interacting selectively and non-covalently with a basal RNA polymerase II (RNAP II) transcription factor of the TFIIH-class in order to recruit it to the RNAP II preinitiation complex (PIC) in order to modulate transcription by RNAP II.
biological process
	GO:0051123	RNA polymerase II transcriptional preinitiation complex assembly	The aggregation, arrangement and bonding together of proteins on an RNA polymerase II promoter DNA to form the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription by RNA polymerase.
	GO:0000122	negative regulation of transcription from RNA polymerase II promoter	Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
	GO:0045944	positive regulation of transcription from RNA polymerase II promoter	Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
	GO:0006357	regulation of transcription from RNA polymerase II promoter	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0070847	core mediator complex	A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The core mediator complex has a stimulatory effect on basal transcription, and contains most of the same subdomains as the larger form of mediator complex -- a head domain comprising proteins known in Saccharomyces as Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; and a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p -- but lacks the regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan core mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins.
	GO:0016592	mediator complex	A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The mediator complex is required for activation of transcription of most protein-coding genes, but can also act as a transcriptional corepressor. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain B,D,F,H,J,L,N,P,R,T,V,X (MED22_YEAST | P32570)

molecular function
	GO:0001104	RNA polymerase II transcription cofactor activity	Interacting selectively and non-covalently with an RNA polymerase II (RNAP II) regulatory transcription factor and also with the RNAP II basal transcription machinery in order to modulate transcription. Cofactors generally do not bind DNA, but rather mediate protein-protein interactions between regulatory transcription factors and the basal RNAP II transcription machinery.
	GO:0003674	molecular_function	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0045944	positive regulation of transcription from RNA polymerase II promoter	Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
	GO:0006357	regulation of transcription from RNA polymerase II promoter	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0070847	core mediator complex	A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The core mediator complex has a stimulatory effect on basal transcription, and contains most of the same subdomains as the larger form of mediator complex -- a head domain comprising proteins known in Saccharomyces as Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; and a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p -- but lacks the regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan core mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins.
	GO:0016592	mediator complex	A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The mediator complex is required for activation of transcription of most protein-coding genes, but can also act as a transcriptional corepressor. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 51)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (2, 24)

Gene Ontology (14, 23)

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