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(-) Description

Title :  CRYSTAL STRUCTURE OF A CITRATE LYASE (BXE_B2899) FROM BURKHOLDERIA XENOVORANS LB400 AT 2.24 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  17 Mar 11  (Deposition) - 06 Apr 11  (Release) - 06 Apr 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.24
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A  (3x)
Biol. Unit 2:  B  (3x)
Biol. Unit 3:  C  (3x)
Biol. Unit 4:  D  (3x)
Biol. Unit 5:  E  (3x)
Biol. Unit 6:  F  (3x)
Keywords :  Tim Beta/Alpha-Barrel, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Citrate Lyase (Bxe_b2899) From Burkholderia Xenovorans Lb400 At 2. 24 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CITRATE LYASE
    Chains: A, B, C, D, E, F
    EC Number: 4.1.3.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BXENO_B0128, BXE_B2899
    Organism Scientific: BURKHOLDERIA XENOVORANS
    Organism Taxid: 266265
    Strain: LB400

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (3x): A     
Biological Unit 2 (3x):  B    
Biological Unit 3 (3x):   C   
Biological Unit 4 (3x):    D  
Biological Unit 5 (3x):     E 
Biological Unit 6 (3x):      F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 56)

Asymmetric Unit (4, 56)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CA13Ligand/IonCALCIUM ION
3CL5Ligand/IonCHLORIDE ION
4MSE36Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 18)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2CA-1Ligand/IonCALCIUM ION
3CL-1Ligand/IonCHLORIDE ION
4MSE18Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 18)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2CA-1Ligand/IonCALCIUM ION
3CL-1Ligand/IonCHLORIDE ION
4MSE18Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (2, 21)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2CA-1Ligand/IonCALCIUM ION
3CL-1Ligand/IonCHLORIDE ION
4MSE18Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (2, 21)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2CA-1Ligand/IonCALCIUM ION
3CL-1Ligand/IonCHLORIDE ION
4MSE18Mod. Amino AcidSELENOMETHIONINE
Biological Unit 5 (1, 18)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2CA-1Ligand/IonCALCIUM ION
3CL-1Ligand/IonCHLORIDE ION
4MSE18Mod. Amino AcidSELENOMETHIONINE
Biological Unit 6 (1, 18)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2CA-1Ligand/IonCALCIUM ION
3CL-1Ligand/IonCHLORIDE ION
4MSE18Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:151 , ASP A:177 , HOH A:372 , HOH A:381 , HOH A:427BINDING SITE FOR RESIDUE CA A 341
02AC2SOFTWAREASP A:230 , HOH A:390 , HOH A:391 , HOH A:550 , HOH B:408BINDING SITE FOR RESIDUE CA A 346
03AC3SOFTWAREGLU B:151 , ASP B:177 , CL B:354 , HOH B:395 , HOH B:397 , HOH B:432BINDING SITE FOR RESIDUE CA B 339
04AC4SOFTWAREHOH A:385 , HOH A:561 , ASP B:230BINDING SITE FOR RESIDUE CA B 340
05AC5SOFTWAREGLY B:174 , LEU B:175 , MSE B:176 , ASP B:177 , CA B:339 , HOH B:483BINDING SITE FOR RESIDUE CL B 354
06AC6SOFTWAREARG C:86 , GLU C:151 , ASP C:177 , CL C:353 , HOH C:407 , HOH C:442BINDING SITE FOR RESIDUE CA C 343
07AC7SOFTWAREASP C:230 , HOH C:402 , HOH C:426 , HOH D:388 , HOH D:409 , HOH D:439BINDING SITE FOR RESIDUE CA C 344
08AC8SOFTWAREGLY C:174 , LEU C:175 , MSE C:176 , ASP C:177 , ALA C:300 , CA C:343BINDING SITE FOR RESIDUE CL C 353
09AC9SOFTWAREARG C:86 , MSE C:176 , TRP C:251 , ILE C:253 , ASP C:298BINDING SITE FOR RESIDUE ACT C 357
10BC1SOFTWAREGLU D:151 , ASP D:177 , CL D:352 , HOH D:364 , HOH D:430BINDING SITE FOR RESIDUE CA D 342
11BC2SOFTWAREHOH C:382 , HOH C:404 , HOH C:446 , ASP D:230 , HOH D:549BINDING SITE FOR RESIDUE CA D 345
12BC3SOFTWAREASP C:91 , HIS C:120 , GLU D:126BINDING SITE FOR RESIDUE CA D 350
13BC4SOFTWAREGLY D:174 , MSE D:176 , ASP D:177 , ALA D:300 , CA D:342BINDING SITE FOR RESIDUE CL D 352
14BC5SOFTWAREARG D:86 , MSE D:176 , TRP D:251 , ASP D:298 , HOH D:364 , HOH D:430 , HOH D:433BINDING SITE FOR RESIDUE ACT D 358
15BC6SOFTWAREASP E:230BINDING SITE FOR RESIDUE CA E 347
16BC7SOFTWAREGLU E:151 , ASP E:177 , CL E:355 , HOH E:463BINDING SITE FOR RESIDUE CA E 348
17BC8SOFTWAREGLY E:174 , LEU E:175 , MSE E:176 , ASP E:177 , CA E:348BINDING SITE FOR RESIDUE CL E 355
18BC9SOFTWAREARG F:86 , GLU F:151 , ASP F:177 , CL F:356BINDING SITE FOR RESIDUE CA F 349
19CC1SOFTWAREHOH E:558 , ASP F:230BINDING SITE FOR RESIDUE CA F 351
20CC2SOFTWAREGLY F:174 , MSE F:176 , ASP F:177 , ALA F:300 , CA F:349BINDING SITE FOR RESIDUE CL F 356

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3R4I)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Ser A:193 -Pro A:194
2Ser B:193 -Pro B:194
3Ser C:193 -Pro C:194
4Ser D:193 -Pro D:194
5Ser E:193 -Pro E:194
6Ser F:193 -Pro F:194

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3R4I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3R4I)

(-) Exons   (0, 0)

(no "Exon" information available for 3R4I)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:321
 aligned with Q13S43_PARXL | Q13S43 from UniProtKB/TrEMBL  Length:338

    Alignment length:325
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322     
         Q13S43_PARXL     3 ALTPAEVLFDGEVPPAVLPACDHYAGSEKLMLKSLALQQQLGPVFDITLDCEDGAQVGREAQHAELVASLLGSEHDRFGRVGVRIHDFDHAHWRDDVRLILRAAKRAPAYITLPKIRHVHDAAEMVAFIEATRRELGIAQPVPVQLLVETHGALTRVFDLAALPGVEALSFGLMDFVSAHDGAIPDTAMRSPGQFDHPLVRRAKLEISAACHAYGKVPSHNVSTEVRDMSVVANDAARARNEFGYTRMWSIHPAQIEAIVAAFAPRDEEITTATEILLAAQSAQWGPTRYHDTLHDRASYRYYWSVLRRAQATGRAVPQDAAPLF 327
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh..----......eeeee.hhhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhh.........eeee.......hhhhhhhhhhhhh......eee....hhhhhhhhhhhhhhhhhhh.......eeeee.hhhhhhhhhhhhh...eeeeeehhhhhhhh.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhh....hhhhhhhhhhhhhhhh....eee..eeehhhhhhhhhhhhhhhhhh....hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r4i A   3 ALTPAEVLFD----PAVLPACDHYAGSEKLmLKSLALQQQLGPVFDITLDCEDGAQVGREAQHAELVASLLGSEHDRFGRVGVRIHDFDHAHWRDDVRLILRAAKRAPAYITLPKIRHVHDAAEmVAFIEATRRELGIAQPVPVQLLVETHGALTRVFDLAALPGVEALSFGLmDFVSAHDGAIPDTAmRSPGQFDHPLVRRAKLEISAACHAYGKVPSHNVSTEVRDmSVVANDAARARNEFGYTRmWSIHPAQIEAIVAAFAPRDEEITTATEILLAAQSAQWGPTRYHDTLHDRASYRYYWSVLRRAQATGRAVPQDAAPLF 327
                                    12    |   22        32|       42        52        62        72        82        92       102       112       122    |  132       142       152       162       172   |   182       192       202       212       222       232       242       252       262       272       282       292       302       312       322     
                                    12   17              33-MSE                                                                                       127-MSE                                          176-MSE        191-MSE                                 231-MSE            250-MSE                                                                         


Chain B from PDB  Type:PROTEIN  Length:319
 aligned with Q13S43_PARXL | Q13S43 from UniProtKB/TrEMBL  Length:338

    Alignment length:325
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322     
         Q13S43_PARXL     3 ALTPAEVLFDGEVPPAVLPACDHYAGSEKLMLKSLALQQQLGPVFDITLDCEDGAQVGREAQHAELVASLLGSEHDRFGRVGVRIHDFDHAHWRDDVRLILRAAKRAPAYITLPKIRHVHDAAEMVAFIEATRRELGIAQPVPVQLLVETHGALTRVFDLAALPGVEALSFGLMDFVSAHDGAIPDTAMRSPGQFDHPLVRRAKLEISAACHAYGKVPSHNVSTEVRDMSVVANDAARARNEFGYTRMWSIHPAQIEAIVAAFAPRDEEITTATEILLAAQSAQWGPTRYHDTLHDRASYRYYWSVLRRAQATGRAVPQDAAPLF 327
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh..------....eeeee.hhhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhh.........eeee.......hhhhhhhhhhhhh......eee....hhhhhhhhhhhhhhhhhhh.......eeeee.hhhhhhhhhhhhh...eeeeeehhhhhhhh.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhh....hhhhhhhhhhhhhhhh....eee..eeehhhhhhhhhhhhhhhhhh....hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r4i B   3 ALTPAEVLFD------VLPACDHYAGSEKLmLKSLALQQQLGPVFDITLDCEDGAQVGREAQHAELVASLLGSEHDRFGRVGVRIHDFDHAHWRDDVRLILRAAKRAPAYITLPKIRHVHDAAEmVAFIEATRRELGIAQPVPVQLLVETHGALTRVFDLAALPGVEALSFGLmDFVSAHDGAIPDTAmRSPGQFDHPLVRRAKLEISAACHAYGKVPSHNVSTEVRDmSVVANDAARARNEFGYTRmWSIHPAQIEAIVAAFAPRDEEITTATEILLAAQSAQWGPTRYHDTLHDRASYRYYWSVLRRAQATGRAVPQDAAPLF 327
                                    12      | 22        32|       42        52        62        72        82        92       102       112       122    |  132       142       152       162       172   |   182       192       202       212       222       232       242       252       262       272       282       292       302       312       322     
                                    12     19            33-MSE                                                                                       127-MSE                                          176-MSE        191-MSE                                 231-MSE            250-MSE                                                                         


Chain C from PDB  Type:PROTEIN  Length:320
 aligned with Q13S43_PARXL | Q13S43 from UniProtKB/TrEMBL  Length:338

    Alignment length:324
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323    
         Q13S43_PARXL     4 LTPAEVLFDGEVPPAVLPACDHYAGSEKLMLKSLALQQQLGPVFDITLDCEDGAQVGREAQHAELVASLLGSEHDRFGRVGVRIHDFDHAHWRDDVRLILRAAKRAPAYITLPKIRHVHDAAEMVAFIEATRRELGIAQPVPVQLLVETHGALTRVFDLAALPGVEALSFGLMDFVSAHDGAIPDTAMRSPGQFDHPLVRRAKLEISAACHAYGKVPSHNVSTEVRDMSVVANDAARARNEFGYTRMWSIHPAQIEAIVAAFAPRDEEITTATEILLAAQSAQWGPTRYHDTLHDRASYRYYWSVLRRAQATGRAVPQDAAPLF 327
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhh..----......eeeee.hhhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhh.........eeee.......hhhhhhhhhhhhh......eee....hhhhhhhhhhhhhhhhhhh.......eeeee.hhhhhhhhhhhhh...eeeeeehhhhhhhh.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhh....hhhhhhhhhhhhhhhh....eee..eeehhhhhhhhhhhhhhhhhh....hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3r4i C   4 LTPAEVLFD----PAVLPACDHYAGSEKLmLKSLALQQQLGPVFDITLDCEDGAQVGREAQHAELVASLLGSEHDRFGRVGVRIHDFDHAHWRDDVRLILRAAKRAPAYITLPKIRHVHDAAEmVAFIEATRRELGIAQPVPVQLLVETHGALTRVFDLAALPGVEALSFGLmDFVSAHDGAIPDTAmRSPGQFDHPLVRRAKLEISAACHAYGKVPSHNVSTEVRDmSVVANDAARARNEFGYTRmWSIHPAQIEAIVAAFAPRDEEITTATEILLAAQSAQWGPTRYHDTLHDRASYRYYWSVLRRAQATGRAVPQDAAPLF 327
                                    |-   |    23        33        43        53        63        73        83        93       103       113       123   |   133       143       153       163       173  |    183       193       203       213       223       233       243      |253       263       273       283       293       303       313       323    
                                   12   17              33-MSE                                                                                       127-MSE                                          176-MSE        191-MSE                                 231-MSE            250-MSE                                                                         


Chain D from PDB  Type:PROTEIN  Length:317
 aligned with Q13S43_PARXL | Q13S43 from UniProtKB/TrEMBL  Length:338

    Alignment length:324
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323    
         Q13S43_PARXL     4 LTPAEVLFDGEVPPAVLPACDHYAGSEKLMLKSLALQQQLGPVFDITLDCEDGAQVGREAQHAELVASLLGSEHDRFGRVGVRIHDFDHAHWRDDVRLILRAAKRAPAYITLPKIRHVHDAAEMVAFIEATRRELGIAQPVPVQLLVETHGALTRVFDLAALPGVEALSFGLMDFVSAHDGAIPDTAMRSPGQFDHPLVRRAKLEISAACHAYGKVPSHNVSTEVRDMSVVANDAARARNEFGYTRMWSIHPAQIEAIVAAFAPRDEEITTATEILLAAQSAQWGPTRYHDTLHDRASYRYYWSVLRRAQATGRAVPQDAAPLF 327
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhh..-------...eeeee.hhhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhh.........eeee.......hhhhhhhhhhhhh......eee....hhhhhhhhhhhhhhhhhhh.......eeeee.hhhhhhhhhhhhh...eeeeeehhhhhhhh.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhh....hhhhhhhhhhhhhhhh....eee..eeehhhhhhhhhhhhhhhhhh....hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3r4i D   4 LTPAEVLFD-------LPACDHYAGSEKLmLKSLALQQQLGPVFDITLDCEDGAQVGREAQHAELVASLLGSEHDRFGRVGVRIHDFDHAHWRDDVRLILRAAKRAPAYITLPKIRHVHDAAEmVAFIEATRRELGIAQPVPVQLLVETHGALTRVFDLAALPGVEALSFGLmDFVSAHDGAIPDTAmRSPGQFDHPLVRRAKLEISAACHAYGKVPSHNVSTEVRDmSVVANDAARARNEFGYTRmWSIHPAQIEAIVAAFAPRDEEITTATEILLAAQSAQWGPTRYHDTLHDRASYRYYWSVLRRAQATGRAVPQDAAPLF 327
                                    |-      | 23        33        43        53        63        73        83        93       103       113       123   |   133       143       153       163       173  |    183       193       203       213       223       233       243      |253       263       273       283       293       303       313       323    
                                   12      20           33-MSE                                                                                       127-MSE                                          176-MSE        191-MSE                                 231-MSE            250-MSE                                                                         


Chain E from PDB  Type:PROTEIN  Length:320
 aligned with Q13S43_PARXL | Q13S43 from UniProtKB/TrEMBL  Length:338

    Alignment length:327
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       
         Q13S43_PARXL     2 RALTPAEVLFDGEVPPAVLPACDHYAGSEKLMLKSLALQQQLGPVFDITLDCEDGAQVGREAQHAELVASLLGSEHDRFGRVGVRIHDFDHAHWRDDVRLILRAAKRAPAYITLPKIRHVHDAAEMVAFIEATRRELGIAQPVPVQLLVETHGALTRVFDLAALPGVEALSFGLMDFVSAHDGAIPDTAMRSPGQFDHPLVRRAKLEISAACHAYGKVPSHNVSTEVRDMSVVANDAARARNEFGYTRMWSIHPAQIEAIVAAFAPRDEEITTATEILLAAQSAQWGPTRYHDTLHDRASYRYYWSVLRRAQATGRAVPQDAAPLFT 328
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh..-------...eeeee.hhhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhh.........eeee.......hhhhhhhhhhhhh......eee....hhhhhhhhhhhhhhhhhhh.......eeeee.hhhhhhhhhhhhh...eeeeeehhhhhhhh.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhh....hhhhhhhhhhhhhhhh....eee..eeehhhhhhhhhhhhhhhhhh....hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r4i E   2 RALTPAEVLFD-------LPACDHYAGSEKLmLKSLALQQQLGPVFDITLDCEDGAQVGREAQHAELVASLLGSEHDRFGRVGVRIHDFDHAHWRDDVRLILRAAKRAPAYITLPKIRHVHDAAEmVAFIEATRRELGIAQPVPVQLLVETHGALTRVFDLAALPGVEALSFGLmDFVSAHDGAIPDTAmRSPGQFDHPLVRRAKLEISAACHAYGKVPSHNVSTEVRDmSVVANDAARARNEFGYTRmWSIHPAQIEAIVAAFAPRDEEITTATEILLAAQSAQWGPTRYHDTLHDRASYRYYWSVLRRAQATGRAVPQDAAPLFT 328
                                    11|       21        31 |      41        51        61        71        81        91       101       111       121     | 131       141       151       161       171    |  181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       
                                     12      20           33-MSE                                                                                       127-MSE                                          176-MSE        191-MSE                                 231-MSE            250-MSE                                                                          


Chain F from PDB  Type:PROTEIN  Length:317
 aligned with Q13S43_PARXL | Q13S43 from UniProtKB/TrEMBL  Length:338

    Alignment length:324
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323    
         Q13S43_PARXL     4 LTPAEVLFDGEVPPAVLPACDHYAGSEKLMLKSLALQQQLGPVFDITLDCEDGAQVGREAQHAELVASLLGSEHDRFGRVGVRIHDFDHAHWRDDVRLILRAAKRAPAYITLPKIRHVHDAAEMVAFIEATRRELGIAQPVPVQLLVETHGALTRVFDLAALPGVEALSFGLMDFVSAHDGAIPDTAMRSPGQFDHPLVRRAKLEISAACHAYGKVPSHNVSTEVRDMSVVANDAARARNEFGYTRMWSIHPAQIEAIVAAFAPRDEEITTATEILLAAQSAQWGPTRYHDTLHDRASYRYYWSVLRRAQATGRAVPQDAAPLF 327
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhh..-------...eeeee.hhhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhh.........eeee.......hhhhhhhhhhhhh......eee....hhhhhhhhhhhhhhhhhhh.......eeeee.hhhhhhhhhhhhh...eeeeeehhhhhhhh.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhh....hhhhhhhhhhhhhhhh....eee..eeehhhhhhhhhhhhhhhhhh....hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3r4i F   4 LTPAEVLFD-------LPACDHYAGSEKLmLKSLALQQQLGPVFDITLDCEDGAQVGREAQHAELVASLLGSEHDRFGRVGVRIHDFDHAHWRDDVRLILRAAKRAPAYITLPKIRHVHDAAEmVAFIEATRRELGIAQPVPVQLLVETHGALTRVFDLAALPGVEALSFGLmDFVSAHDGAIPDTAmRSPGQFDHPLVRRAKLEISAACHAYGKVPSHNVSTEVRDmSVVANDAARARNEFGYTRmWSIHPAQIEAIVAAFAPRDEEITTATEILLAAQSAQWGPTRYHDTLHDRASYRYYWSVLRRAQATGRAVPQDAAPLF 327
                                    |-      | 23        33        43        53        63        73        83        93       103       113       123   |   133       143       153       163       173  |    183       193       203       213       223       233       243      |253       263       273       283       293       303       313       323    
                                   12      20           33-MSE                                                                                       127-MSE                                          176-MSE        191-MSE                                 231-MSE            250-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3R4I)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3R4I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3R4I)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q13S43_PARXL | Q13S43)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0008815    citrate (pro-3S)-lyase activity    Catalysis of the reaction: citrate = acetate + oxaloacetate.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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