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(-) Description

Title :  STRUCTURE OF THE YRDA FERRIPYOCHELIN BINDING PROTEIN FROM SALMONELLA ENTERICA
 
Authors :  S. M. Anderson, Z. Wawrzak, O. Onopriyenko, S. N. Peterson, W. F. Anders A. Savchenko, Center For Structural Genomics Of Infectious Di (Csgid)
Date :  16 Mar 11  (Deposition) - 30 Mar 11  (Release) - 30 Mar 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.20
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (3x)
Keywords :  Structural Genomics, Csgid, Center For Structural Genomics Of Infectious Diseases, All Beta Protein, Single-Stranded Left-Handed Beta-Helix, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. M. Anderson, Z. Wawrzak, O. Onopriyenko, S. N. Peterson, W. F. Anderson, A. Savchenko, Center For Structural Genomics Of Infectious Diseases (Csgid)
Structure Of The Yrda Ferripyochelin Binding Protein From Salmonella Enterica
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - FERRIPYOCHELIN BINDING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21-CODONPLUS(DE3)-RIPL
    Expression System Taxid: 469008
    Gene: YRDA, STM3399
    Organism Scientific: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM
    Organism Taxid: 90371
    Strain: LT2

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1ZN1Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:67 , HIS A:91 , HIS A:96 , HOH A:204 , HOH A:244 , HOH A:361BINDING SITE FOR RESIDUE ZN A 185

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3R3R)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ser A:145 -Pro A:146

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3R3R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3R3R)

(-) Exons   (0, 0)

(no "Exon" information available for 3R3R)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:184
 aligned with Q8ZLN3_SALTY | Q8ZLN3 from UniProtKB/TrEMBL  Length:184

    Alignment length:184
                               1                                                                                                                                                                                    
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177    
         Q8ZLN3_SALTY     - ---MSDTLRPYKNLFPGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLYLGSPVKQIRPLSDAERSGLQYSANNYVKWKDDYLSQDNH 181
               SCOP domains d3r3ra_ A: automated matches                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------------------------------------------------------------------Hexapep-3r3rA01 A:97-132            ------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------------------------------------------Hexapep-3r3rA02 A:97-132            ------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------------------------------------------------------Hexapep-3r3rA03 A:97-132            ------------------------------------------------- Pfam domains (3)
         Sec.struct. author .......ee.......ee....ee....eeeeeeee....ee....eeeeeeeeeee....ee....eee.............eee....ee....eee..ee...eee....ee....ee...eee....ee....ee...eeee....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r3r A  -2 SNAMSDTLRPYKNLFPGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLYLGSPVKQIRPLSDAERSGLQYSANNYVKWKDDYLSQDNH 181
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3R3R)

(-) Pfam Domains  (1, 3)

Asymmetric Unit
(-)
Clan: no clan defined [family: Hexapep] (52)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3R3R)

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