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(-) Description

Title :  CRYSTAL STRUCTURE OF ALPHA-KETOGLUTARATE-DEPENDENT TAURINE DIOXYGENASE FROM MYCOBACTERIUM AVIUM, NATIVE FORM
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  10 Mar 11  (Deposition) - 06 Apr 11  (Release) - 22 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Ssgcid, Oxidoreductase, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Baugh, I. Phan, D. W. Begley, M. C. Clifton, B. Armour, D. M. Dranow, B. M. Taylor, M. M. Muruthi, J. Abendroth, J. W. Fairman, D. Fox, S. H. Dieterich, B. L. Staker, A. S. Gardberg, R. Choi, S. N. Hewitt, A. J. Napuli, J. Myers, L. K. Barrett, Y. Zhang, M. Ferrell, E. Mundt, K. Thompkins, N. Tran, S. Lyons-Abbott, A. Abramov, A. Sekar, D. Serbzhinskiy, D. Lorimer, G. W. Buchko, R. Stacy, L. J. Stewart, T. E. Edwards, W. C. Van Voorhis, P. J. Myler
Increasing The Structural Coverage Of Tuberculosis Drug Targets.
Tuberculosis (Edinb) V. 95 142 2015
PubMed-ID: 25613812  |  Reference-DOI: 10.1016/J.TUBE.2014.12.003

(-) Compounds

Molecule 1 - ALPHA-KETOGLUTARATE-DEPENDENT TAURINE DIOXYGENASE
    Chains: A, B
    EC Number: 1.14.11.17
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: AVA0421
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MAV_4353
    Organism Scientific: MYCOBACTERIUM AVIUM
    Organism Taxid: 243243
    Strain: 104

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2EDO3Ligand/Ion1,2-ETHANEDIOL
3FE2Ligand/IonFE (III) ION
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO6Ligand/Ion1,2-ETHANEDIOL
3FE-1Ligand/IonFE (III) ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:36 , GLU A:193 , HOH A:458BINDING SITE FOR RESIDUE EDO A 298
2AC2SOFTWAREHIS A:99 , ASP A:101 , HIS A:253 , HOH A:325 , HOH A:448 , HOH A:449BINDING SITE FOR RESIDUE FE A 299
3AC3SOFTWAREARG A:235 , HOH A:370BINDING SITE FOR RESIDUE CL A 300
4AC4SOFTWAREARG A:17 , HIS A:49BINDING SITE FOR RESIDUE CL A 301
5AC5SOFTWAREARG B:48 , HIS B:49BINDING SITE FOR RESIDUE EDO B 298
6AC6SOFTWARETHR B:100 , TYR B:108 , THR B:131 , LEU B:199 , ASN B:248 , ARG B:249 , THR B:251BINDING SITE FOR RESIDUE EDO B 299
7AC7SOFTWAREHIS B:99 , ASP B:101 , HIS B:253 , HOH B:429 , HOH B:430BINDING SITE FOR RESIDUE FE B 300
8AC8SOFTWARELEU B:127 , ARG B:235 , HOH B:337BINDING SITE FOR RESIDUE CL B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3R1J)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3R1J)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3R1J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3R1J)

(-) Exons   (0, 0)

(no "Exon" information available for 3R1J)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:246
 aligned with A0A0H2ZSG9_M | A0A0H2ZSG9 from UniProtKB/TrEMBL  Length:297

    Alignment length:292
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294  
         A0A0H2ZSG9_M     5 ITVTKLGSRIGARVDGVRLGGDLDDATVEQIRRALLTHKVIFFRHQHHLDDSRQLEFARLLGTPIGHPAASALAAKHLPVITPIDSEYGKATRWHTDVTFAANYPAASILRAVTLPSYGGSTLWASTVAAYQQLPEPLRHLTENLWALHTNRYDYVRNDPMNDTQRAFRQAFEKPDFRTEHPVVRVHPETGERALLAGDFVRGFVGLDGHESSVLLELLQRRITMPENTVRWSWAPGDVAMWDNRATQHRAIDDYDDQPRLMHRITLMGDVPVNVHGERSRVISGAPLEVLA 296
               SCOP domains d3r1ja_ A: automated matches                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee......eeee........hhhhhhhhhhhhhhhheeee......hhhhhhhhhhhhh....------------------------................eeeeeeee.......eeeeehhhhhhh.hhhhhhhhh..eeeee..----------------------...eeeee.eee......eee.....eeee...hhhhhhhhhhhhhhhhhhhh.eeee......eeeee...eeeee.........eeeeeee.............eeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r1j A   5 ITVTKLGSRIGARVDGVRLGGDLDDATVEQIRRALLTHKVIFFRHQHHLDDSRQLEFARLLGTPIG------------------------ATRWHTDVTFAANYPAASILRAVTLPSYGGSTLWASTVAAYQQLPEPLRHLTENLWALHTNR----------------------PDFRTEHPVVRVHPETGERALLAGDFVRGFVGLDGHESSVLLELLQRRITMPENTVRWSWAPGDVAMWDNRATQHRAIDDYDDQPRLMHRITLMGDVPVNVHGERSRVISGAPLEVLA 296
                                    14        24        34        44        54        64     |   -         -         -|      104       114       124       134       144       154 |       -         -    |  184       194       204       214       224       234       244       254       264       274       284       294  
                                                                                            70                       95                                                          156                    179                                                                                                                     


Chain A from PDB  Type:PROTEIN  Length:246
 aligned with A0A0M3KKU1_M | A0A0M3KKU1 from UniProtKB/TrEMBL  Length:301

    Alignment length:292
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298  
         A0A0M3KKU1_M     9 ITVTKLGSRIGARVDGVRLGGDLDDATVEQIRRALLTHKVIFFRHQHHLDDSRQLEFARLLGTPIGHPAASALAAKHLPVITPIDSEYGKATRWHTDVTFAANYPAASILRAVTLPSYGGSTLWASTVAAYQQLPEPLRHLTENLWALHTNRYDYVRNDPMNDTQRAFRQAFEKPDFRTEHPVVRVHPETGERALLAGDFVRGFVGLDGHESSVLLELLQRRITMPENTVRWSWAPGDVAMWDNRATQHRAIDDYDDQPRLMHRITLMGDVPVNVHGERSRVISGAPLEVLA 300
               SCOP domains d3r1ja_ A: automated matches                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee......eeee........hhhhhhhhhhhhhhhheeee......hhhhhhhhhhhhh....------------------------................eeeeeeee.......eeeeehhhhhhh.hhhhhhhhh..eeeee..----------------------...eeeee.eee......eee.....eeee...hhhhhhhhhhhhhhhhhhhh.eeee......eeeee...eeeee.........eeeeeee.............eeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r1j A   5 ITVTKLGSRIGARVDGVRLGGDLDDATVEQIRRALLTHKVIFFRHQHHLDDSRQLEFARLLGTPIG------------------------ATRWHTDVTFAANYPAASILRAVTLPSYGGSTLWASTVAAYQQLPEPLRHLTENLWALHTNR----------------------PDFRTEHPVVRVHPETGERALLAGDFVRGFVGLDGHESSVLLELLQRRITMPENTVRWSWAPGDVAMWDNRATQHRAIDDYDDQPRLMHRITLMGDVPVNVHGERSRVISGAPLEVLA 296
                                    14        24        34        44        54        64     |   -         -         -|      104       114       124       134       144       154 |       -         -    |  184       194       204       214       224       234       244       254       264       274       284       294  
                                                                                            70                       95                                                          156                    179                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:241
 aligned with A0A0H2ZSG9_M | A0A0H2ZSG9 from UniProtKB/TrEMBL  Length:297

    Alignment length:288
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284        
         A0A0H2ZSG9_M     5 ITVTKLGSRIGARVDGVRLGGDLDDATVEQIRRALLTHKVIFFRHQHHLDDSRQLEFARLLGTPIGHPAASALAAKHLPVITPIDSEYGKATRWHTDVTFAANYPAASILRAVTLPSYGGSTLWASTVAAYQQLPEPLRHLTENLWALHTNRYDYVRNDPMNDTQRAFRQAFEKPDFRTEHPVVRVHPETGERALLAGDFVRGFVGLDGHESSVLLELLQRRITMPENTVRWSWAPGDVAMWDNRATQHRAIDDYDDQPRLMHRITLMGDVPVNVHGERSRVISGAPL 292
               SCOP domains d3r1jb_ B: automated matches                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee......eeee........hhhhhhhhhhhhhhhheeee......hhhhhhhhhhhhh...-------------------------................eeeeeeee.......eeeeehhhhhhh.hhhhhhhhh..eeeee..----------------------...eeeee.eee......eee.....eeee...hhhhhhhhhhhhhhhhhhhh.eeee......eeeee...eeeee.........eeeeeee.............eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3r1j B   5 ITVTKLGSRIGARVDGVRLGGDLDDATVEQIRRALLTHKVIFFRHQHHLDDSRQLEFARLLGTPI-------------------------ATRWHTDVTFAANYPAASILRAVTLPSYGGSTLWASTVAAYQQLPEPLRHLTENLWALHTNR----------------------PDFRTEHPVVRVHPETGERALLAGDFVRGFVGLDGHESSVLLELLQRRITMPENTVRWSWAPGDVAMWDNRATQHRAIDDYDDQPRLMHRITLMGDVPVNVHGERSRVISGAPL 292
                                    14        24        34        44        54        64    |    -         -         -|      104       114       124       134       144       154 |       -         -    |  184       194       204       214       224       234       244       254       264       274       284        
                                                                                           69                        95                                                          156                    179                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:241
 aligned with A0A0M3KKU1_M | A0A0M3KKU1 from UniProtKB/TrEMBL  Length:301

    Alignment length:288
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288        
         A0A0M3KKU1_M     9 ITVTKLGSRIGARVDGVRLGGDLDDATVEQIRRALLTHKVIFFRHQHHLDDSRQLEFARLLGTPIGHPAASALAAKHLPVITPIDSEYGKATRWHTDVTFAANYPAASILRAVTLPSYGGSTLWASTVAAYQQLPEPLRHLTENLWALHTNRYDYVRNDPMNDTQRAFRQAFEKPDFRTEHPVVRVHPETGERALLAGDFVRGFVGLDGHESSVLLELLQRRITMPENTVRWSWAPGDVAMWDNRATQHRAIDDYDDQPRLMHRITLMGDVPVNVHGERSRVISGAPL 296
               SCOP domains d3r1jb_ B: automated matches                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee......eeee........hhhhhhhhhhhhhhhheeee......hhhhhhhhhhhhh...-------------------------................eeeeeeee.......eeeeehhhhhhh.hhhhhhhhh..eeeee..----------------------...eeeee.eee......eee.....eeee...hhhhhhhhhhhhhhhhhhhh.eeee......eeeee...eeeee.........eeeeeee.............eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3r1j B   5 ITVTKLGSRIGARVDGVRLGGDLDDATVEQIRRALLTHKVIFFRHQHHLDDSRQLEFARLLGTPI-------------------------ATRWHTDVTFAANYPAASILRAVTLPSYGGSTLWASTVAAYQQLPEPLRHLTENLWALHTNR----------------------PDFRTEHPVVRVHPETGERALLAGDFVRGFVGLDGHESSVLLELLQRRITMPENTVRWSWAPGDVAMWDNRATQHRAIDDYDDQPRLMHRITLMGDVPVNVHGERSRVISGAPL 292
                                    14        24        34        44        54        64    |    -         -         -|      104       114       124       134       144       154 |       -         -    |  184       194       204       214       224       234       244       254       264       274       284        
                                                                                           69                        95                                                          156                    179
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3R1J)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3R1J)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3R1J)

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  3r1j
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  A0A0M3KKU1_M | A0A0M3KKU1
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 Related Entries

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