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(-) Description

Title :  STRUCTURE OF NEUREXIN 1 ALPHA (DOMAINS LNS1-LNS6), WITH SPLICE INSERT SS3
 
Authors :  V. Venugopal, G. Rudenko
Date :  07 Mar 11  (Deposition) - 15 Jun 11  (Release) - 15 Jun 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.95
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Synaptic Adhesion Molecule, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Chen, V. Venugopal, B. Murray, G. Rudenko
The Structure Of Neurexin 1α Reveals Features Promotin A Role As Synaptic Organizer
Structure V. 19 779 2011
PubMed-ID: 21620716  |  Reference-DOI: 10.1016/J.STR.2011.03.012

(-) Compounds

Molecule 1 - NEUREXIN-1-ALPHA
    Chains: A, B
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 31-1355
    Gene: NRXN1
    Mutation: YES
    Organism Common: BOVINE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:1227 , ASN A:1230 , TYR A:1244 , NAG A:2001 , ARG B:1025BINDING SITE FOR RESIDUE NAG A 2000
2AC2SOFTWARENAG A:2000BINDING SITE FOR RESIDUE NAG A 2001
3AC3SOFTWAREARG A:1025 , SER B:1227 , ASN B:1230 , TYR B:1244 , NAG B:2001BINDING SITE FOR RESIDUE NAG B 2000
4AC4SOFTWARENAG B:2000BINDING SITE FOR RESIDUE NAG B 2001

(-) SS Bonds  (20, 20)

Asymmetric Unit
No.Residues
1A:444 -A:480
2A:650 -A:679
3A:687 -A:698
4A:692 -A:707
5A:709 -A:719
6A:890 -A:898
7A:1059 -A:1087
8A:1094 -A:1105
9A:1099 -A:1114
10A:1116 -A:1126
11B:444 -B:480
12B:650 -B:679
13B:687 -B:698
14B:692 -B:707
15B:709 -B:719
16B:890 -B:898
17B:1059 -B:1087
18B:1094 -B:1105
19B:1099 -B:1114
20B:1116 -B:1126

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3R05)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3R05)

(-) PROSITE Motifs  (3, 16)

Asymmetric Unit (3, 16)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LAM_G_DOMAINPS50025 Laminin G domain profile.NRX1A_BOVIN30-217
299-496
 
503-695
 
741-914
 
928-1103
 
1149-1347
 		  10-
A:283-480
B:283-480
A:487-679
B:487-679
A:725-898
B:725-898
A:912-1087
B:912-1087
A:1133-1331
B:1133-1331
2EGF_3PS50026 EGF-like domain profile.NRX1A_BOVIN219-256
699-736
 
1106-1143
 		  4-
A:683-720
B:683-720
A:1090-1127
B:1090-1127
3ASX_HYDROXYLPS00010 Aspartic acid and asparagine hydroxylation site.NRX1A_BOVIN714-725
 		  2A:698-709
B:698-709
Biological Unit 1 (3, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LAM_G_DOMAINPS50025 Laminin G domain profile.NRX1A_BOVIN30-217
299-496
 
503-695
 
741-914
 
928-1103
 
1149-1347
 		  5-
A:283-480
-
A:487-679
-
A:725-898
-
A:912-1087
-
A:1133-1331
-
2EGF_3PS50026 EGF-like domain profile.NRX1A_BOVIN219-256
699-736
 
1106-1143
 		  2-
A:683-720
-
A:1090-1127
-
3ASX_HYDROXYLPS00010 Aspartic acid and asparagine hydroxylation site.NRX1A_BOVIN714-725
 		  1A:698-709
-
Biological Unit 2 (3, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LAM_G_DOMAINPS50025 Laminin G domain profile.NRX1A_BOVIN30-217
299-496
 
503-695
 
741-914
 
928-1103
 
1149-1347
 		  5-
-
B:283-480
-
B:487-679
-
B:725-898
-
B:912-1087
-
B:1133-1331
2EGF_3PS50026 EGF-like domain profile.NRX1A_BOVIN219-256
699-736
 
1106-1143
 		  2-
-
B:683-720
-
B:1090-1127
3ASX_HYDROXYLPS00010 Aspartic acid and asparagine hydroxylation site.NRX1A_BOVIN714-725
 		  1-
B:698-709

(-) Exons   (0, 0)

(no "Exon" information available for 3R05)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1008
 aligned with NRX1A_BOVIN | Q28146 from UniProtKB/Swiss-Prot  Length:1530

    Alignment length:1057
                                   306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806       816       826       836       846       856       866       876       886       896       906       916       926       936       946       956       966       976       986       996      1006      1016      1026      1036      1046      1056      1066      1076      1086      1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206      1216      1226      1236      1246      1256      1266      1276      1286      1296      1306      1316      1326      1336      1346       
         NRX1A_BOVIN    297 EYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQTSGIGHAMVNKLHCSVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISLPKWNAKKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSGTISVNTLRTPYTAPGESQILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLDCIRINCNSSKGPETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIADPVTFKTKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGISCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGNNDNERLAIARQRIPYRLGRVVDEWLLDKGRQLTIFNSQATIIIGGKEQGQPFQGQLSGLYYNGLKVLNMAAENDANIAIVGNVRLVGEV 1353
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.....eeee.....eee.eeeeeeeee.....eeeeee....eeeeeeee..eeeeeeee....eeeee............eeeeeeee..e---------------eeeee.....eeee.......eee..eeee...................eeeeeeeee....eehhhhhhhhh......................eee......eee.......eeeeeeeee.....eeeeeee..................eeeeee....eeeeee....eeeee...........eeeeeeee..eeeeee..eeeeee.............eee...............hhhhhh.....eeeeeeee..eee.............ee...............hhhhheeee....eeee.....ee.....ee..eeeee....eeeeeeeeeee.eeeeeeeee.....eeeeeee......eeeeeee..eeeeeee.......----....eeee.........eeeeeeee..eeeeee.....eeee.......eeeeeeee................eeeeeeeee...hhhhhhhh.....eee..ee.........eee.....eeee........eeeeeeee.....eeeeeee.....eeeeeee..eeeeeee.....eeee...........eeeeeeee....eeeeee..eeeeee............eee......hhhhh...........eeeeeeee............eee..eee..................eeeee..eeeee................eeeeeeeeeeeeee.hhhhh....eeeeeeeee.....eeeeeeee......eeeeeee..eeeeeee.....eeee...........eeeeeeee..eeeeee.....eee....------------------------------........eeeeee..........eeeeeeee...hhhhhhh.....eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --LAM_G_DOMAIN  PDB: A:283-480 UniProt: 299-496                                                                                                                                                         ------LAM_G_DOMAIN  PDB: A:487-679 UniProt: 503-695                                                                                                                                                    ---EGF_3  PDB: A:683-720 UniProt: 699-736----LAM_G_DOMAIN  PDB: A:725-898 UniProt: 741-914                                                                                                                                 -------------LAM_G_DOMAIN  PDB: A:912-1087 UniProt: 928-1103                                                                                                                                 --EGF_3  PDB: A:1090-1127               -----LAM_G_DOMAIN  PDB: A:1133-1331 UniProt: 1149-1347                                                                                                                                                      ------ PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASX_HYDROXYL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3r05 A  281 EYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQ---------------VTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISLPKWNAKKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSGTISVNTLRTPYTAPGESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLDCIRIN----KGPETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIADPVTFKTKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAG------------------------------RQLTIFNSQATIIIGGKEQGQPFQGQLSGLYYNGLKVLNMAAENDANIAIVGNVRLVGEV 1337
                                   290       300       310       320       330       340       350       360       370       | -         -   |   400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790    |  800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230      1240      |  -         -         -      1280      1290      1300      1310      1320      1330       
                                                                                                                           378             394                                                                                                                                                                                                                                                                                                                                                                                                              795  800                                                                                                                                                                                                                                                                                                                                                                                                                                                           1247                           1278                                                           


Chain B from PDB  Type:PROTEIN  Length:1008
 aligned with NRX1A_BOVIN | Q28146 from UniProtKB/Swiss-Prot  Length:1530

    Alignment length:1057
                                   306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806       816       826       836       846       856       866       876       886       896       906       916       926       936       946       956       966       976       986       996      1006      1016      1026      1036      1046      1056      1066      1076      1086      1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206      1216      1226      1236      1246      1256      1266      1276      1286      1296      1306      1316      1326      1336      1346       
         NRX1A_BOVIN    297 EYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQTSGIGHAMVNKLHCSVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISLPKWNAKKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSGTISVNTLRTPYTAPGESQILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLDCIRINCNSSKGPETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIADPVTFKTKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGISCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGNNDNERLAIARQRIPYRLGRVVDEWLLDKGRQLTIFNSQATIIIGGKEQGQPFQGQLSGLYYNGLKVLNMAAENDANIAIVGNVRLVGEV 1353
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------------------------------------------------------------------------------------------------               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Laminin_G_2-3r05B01 B:1163-1312                                                                                                                       ------------------------- Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------------------------------------------------               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Laminin_G_2-3r05B02 B:1163-1312                                                                                                                       ------------------------- Pfam domains (2)
           Pfam domains (3) --------------------------------------------------------------------------------------------------               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Laminin_G_2-3r05B03 B:1163-1312                                                                                                                       ------------------------- Pfam domains (3)
           Pfam domains (4) --------------------------------------------------------------------------------------------------               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Laminin_G_2-3r05B04 B:1163-1312                                                                                                                       ------------------------- Pfam domains (4)
           Pfam domains (5) --------------------------------------------------------------------------------------------------               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Laminin_G_2-3r05B05 B:1163-1312                                                                                                                       ------------------------- Pfam domains (5)
           Pfam domains (6) --------------------------------------------------------------------------------------------------               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Laminin_G_2-3r05B06 B:1163-1312                                                                                                                       ------------------------- Pfam domains (6)
           Pfam domains (7) --------------------------------------------------------------------------------------------------               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Laminin_G_2-3r05B07 B:1163-1312                                                                                                                       ------------------------- Pfam domains (7)
           Pfam domains (8) --------------------------------------------------------------------------------------------------               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Laminin_G_2-3r05B08 B:1163-1312                                                                                                                       ------------------------- Pfam domains (8)
           Pfam domains (9) --------------------------------------------------------------------------------------------------               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Laminin_G_2-3r05B09 B:1163-1312                                                                                                                       ------------------------- Pfam domains (9)
          Pfam domains (10) --------------------------------------------------------------------------------------------------               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Laminin_G_2-3r05B10 B:1163-1312                                                                                                                       ------------------------- Pfam domains (10)
         Sec.struct. author ..eeee.....eeee.....eee.eeeeeeeee.....eeeeee....eeeeeeee..eeeeeeee....eeeee............eeeeeeee..e---------------eeeee.....eeee.......eee..eeee...................eeeeeeeee....eehhhhhhhhh......................eee......eee.......eeeeeeeee.....eeeeeee..................eeeeeee..eeeeeee....eeeee...........eeeeeeee..eeeeee..eeeeee.............eee...............hhhhhhh....eeeeeeee..eee.............ee........hhhhh..hhhhheeee....eeee.....ee.....ee..eeeee....eeeeeeeeeee.eeeeeeeee....eeeeeeee......eeeeeee..eeeeeee.......----...eeeee.........eeeeeeee..eeeeee.....eeee.......eeeeeeee................eeeeeeeee...hhhhhhhhh....eee..ee.........eee.....eeee........eeeeeeee.....eeeeeee.....eeeeeee..eeeeeee.....eeee...........eeeeeeee....eeeeee..eeeeee............eee.....hhhhhh...........eeeeeeee............eee..eee..................eeeee..eeeee................eeeeeeeeeeeeee..........eeeeeeeee.....eeeeeeee......eeeeeee..eeeeeee....eeeee...........eeeeeeee..eeeeee.....eee....------------------------------........eeeeee..........eeeeeeee...hhhhhhh.....eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --LAM_G_DOMAIN  PDB: B:283-480 UniProt: 299-496                                                                                                                                                         ------LAM_G_DOMAIN  PDB: B:487-679 UniProt: 503-695                                                                                                                                                    ---EGF_3  PDB: B:683-720 UniProt: 699-736----LAM_G_DOMAIN  PDB: B:725-898 UniProt: 741-914                                                                                                                                 -------------LAM_G_DOMAIN  PDB: B:912-1087 UniProt: 928-1103                                                                                                                                 --EGF_3  PDB: B:1090-1127               -----LAM_G_DOMAIN  PDB: B:1133-1331 UniProt: 1149-1347                                                                                                                                                      ------ PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASX_HYDROXYL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3r05 B  281 EYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQ---------------VTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISLPKWNAKKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSGTISVNTLRTPYTAPGESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLDCIRIN----KGPETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIADPVTFKTKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAG------------------------------RQLTIFNSQATIIIGGKEQGQPFQGQLSGLYYNGLKVLNMAAENDANIAIVGNVRLVGEV 1337
                                   290       300       310       320       330       340       350       360       370       | -         -   |   400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790    |  800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230      1240      |  -         -         -      1280      1290      1300      1310      1320      1330       
                                                                                                                           378             394                                                                                                                                                                                                                                                                                                                                                                                                              795  800                                                                                                                                                                                                                                                                                                                                                                                                                                                           1247                           1278
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3R05)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3R05)

(-) Pfam Domains  (1, 10)

Asymmetric Unit
(-)
Clan: Concanavalin (293)
(-)
Family: Laminin_G_2 (14)
(-)
Bos taurus (Bovine) (4)
1aLaminin_G_2-3r05B01B:1163-1312
1bLaminin_G_2-3r05B02B:1163-1312
1cLaminin_G_2-3r05B03B:1163-1312
1dLaminin_G_2-3r05B04B:1163-1312
1eLaminin_G_2-3r05B05B:1163-1312
1fLaminin_G_2-3r05B06B:1163-1312
1gLaminin_G_2-3r05B07B:1163-1312
1hLaminin_G_2-3r05B08B:1163-1312
1iLaminin_G_2-3r05B09B:1163-1312
1jLaminin_G_2-3r05B10B:1163-1312

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (NRX1A_BOVIN | Q28146)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0097109    neuroligin family protein binding    Interacting selectively and non-covalently with a member of the neuroligin protein family, neuronal cell surface proteins that mediate synapse formation.
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
cellular component
    GO:0030054    cell junction    A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0042734    presynaptic membrane    A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane.
    GO:0045202    synapse    The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NRX1A_BOVIN | Q28146: 2h0b 2r16 3asi 3poy 3qcw

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3R05)