3QZ3 - JenaLib

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Title :   THE CRYSTAL STRUCTURE OF FERRITIN FROM VIBRIO CHOLERAE O1 BIOVAR EL TOR STR. N16961

Authors :   K. Tan, R. Mulligan, J. Hasseman, W. F. Anderson, A. Joachimiak, Center Structural Genomics Of Infectious Diseases (Csgid)

Date :   04 Mar 11 (Deposition) - 23 Mar 11 (Release) - 06 Apr 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B,C  (8x)
Biol. Unit 2: A,C  (1x)
Biol. Unit 3: B  (2x)

Keywords :   Structural Genomics, The Center For Structural Genomics Of Infectious Diseases, Csgid, All Alpha Ferritin-Like, Cytoplasmic, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Tan, R. Mulligan, J. Hasseman, W. F. Anderson, A. Joachimiak
The Crystal Structure Of Ferritin From Vibrio Cholerae O1 Biovar El Tor Str. N16961
To Be Published
PubMed: search

Molecule 1 - FERRITIN
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG19C
	Expression System Strain	:	PPK1037
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	VC_0078
	Organism Scientific	:	VIBRIO CHOLERAE O1 BIOVAR EL TOR
	Organism Taxid	:	243277
	Strain	:	N16961

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (8x)	:	A	B	C
Biological Unit 2 (1x)	:	A		C
Biological Unit 3 (2x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 19)

No.	Name	Count	Type	Full Name
1	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	15	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (2, 152)

No.	Name	Count	Type	Full Name
1	EDO	32	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	120	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (2, 13)

No.	Name	Count	Type	Full Name
1	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	10	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (2, 12)

No.	Name	Count	Type	Full Name
1	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	10	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER C:9 , GLN C:10 , ALA C:11	BINDING SITE FOR RESIDUE EDO C 182
2	AC2	SOFTWARE	HIS A:52 , GLU A:55 , LEU A:167 , ALA A:168	BINDING SITE FOR RESIDUE EDO A 182
3	AC3	SOFTWARE	ALA B:51 , GLU B:55	BINDING SITE FOR RESIDUE EDO B 182
4	AC4	SOFTWARE	ARG C:83	BINDING SITE FOR RESIDUE EDO C 183

(no "SS Bond" information available for 3QZ3)

(no "Cis Peptide Bond" information available for 3QZ3)

(no "SAP(SNP)/Variant" information available for 3QZ3)

(no "PROSITE Motif" information available for 3QZ3)

(no "Exon" information available for 3QZ3)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:165
 aligned with Q9KVR1_VIBCH | Q9KVR1 from UniProtKB/TrEMBL  Length:181

    Alignment length:165
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165     
         Q9KVR1_VIBCH     6 FMLSQAMVEHLNEQINLEFFSSNLYLQMSAWCEDKGFDGAAEFLRAHAVEEMQHMQRLFTYVSETGALPILGAIAAPRHDFASLGEVFRETYQHEQKITQQINKLAHVAFTSQDYSTFNFLQWYVAEQHEEEKLFKGILDKLELVGEDGKALFFIDKDLAALAKK 170
               SCOP domains d3qz3a_ A: automated matches                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qz3 A   6 FmLSQAmVEHLNEQINLEFFSSNLYLQmSAWCEDKGFDGAAEFLRAHAVEEmQHmQRLFTYVSETGALPILGAIAAPRHDFASLGEVFRETYQHEQKITQQINKLAHVAFTSQDYSTFNFLQWYVAEQHEEEKLFKGILDKLELVGEDGKALFFIDKDLAALAKK 170
                             |    | 15        25       |35        45        55 |  |   65        75        85        95       105       115       125       135       145       155       165     
                             |    |                   33-MSE                  57-MSE                                                                                                             
                             7-MSE|                                              60-MSE                                                                                                          
                                 12-MSE

Chain B from PDB  Type:PROTEIN  Length:163
 aligned with Q9KVR1_VIBCH | Q9KVR1 from UniProtKB/TrEMBL  Length:181

    Alignment length:163
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166   
         Q9KVR1_VIBCH     7 MLSQAMVEHLNEQINLEFFSSNLYLQMSAWCEDKGFDGAAEFLRAHAVEEMQHMQRLFTYVSETGALPILGAIAAPRHDFASLGEVFRETYQHEQKITQQINKLAHVAFTSQDYSTFNFLQWYVAEQHEEEKLFKGILDKLELVGEDGKALFFIDKDLAALAK 169
               SCOP domains d3qz3b_ B: automated matches                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qz3 B   7 mLSQAmVEHLNEQINLEFFSSNLYLQmSAWCEDKGFDGAAEFLRAHAVEEmQHmQRLFTYVSETGALPILGAIAAPRHDFASLGEVFRETYQHEQKITQQINKLAHVAFTSQDYSTFNFLQWYVAEQHEEEKLFKGILDKLELVGEDGKALFFIDKDLAALAK 169
                            |    |  16        26      | 36        46        56|  |    66        76        86        96       106       116       126       136       146       156       166   
                            7-MSE|                   33-MSE                  57-MSE                                                                                                            
                                12-MSE                                          60-MSE

Chain C from PDB  Type:PROTEIN  Length:164
 aligned with Q9KVR1_VIBCH | Q9KVR1 from UniProtKB/TrEMBL  Length:181

    Alignment length:164
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166    
         Q9KVR1_VIBCH     7 MLSQAMVEHLNEQINLEFFSSNLYLQMSAWCEDKGFDGAAEFLRAHAVEEMQHMQRLFTYVSETGALPILGAIAAPRHDFASLGEVFRETYQHEQKITQQINKLAHVAFTSQDYSTFNFLQWYVAEQHEEEKLFKGILDKLELVGEDGKALFFIDKDLAALAKK 170
               SCOP domains d3qz3c_ C: automated matches                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------Ferritin-3qz3C01 C:13-150                                                                                                                 -------------------- Pfam domains (1)
           Pfam domains (2) ------Ferritin-3qz3C02 C:13-150                                                                                                                 -------------------- Pfam domains (2)
           Pfam domains (3) ------Ferritin-3qz3C03 C:13-150                                                                                                                 -------------------- Pfam domains (3)
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qz3 C   7 mLSQAmVEHLNEQINLEFFSSNLYLQmSAWCEDKGFDGAAEFLRAHAVEEmQHmQRLFTYVSETGALPILGAIAAPRHDFASLGEVFRETYQHEQKITQQINKLAHVAFTSQDYSTFNFLQWYVAEQHEEEKLFKGILDKLELVGEDGKALFFIDKDLAALAKK 170
                            |    |  16        26      | 36        46        56|  |    66        76        86        96       106       116       126       136       146       156       166    
                            7-MSE|                   33-MSE                  57-MSE                                                                                                             
                                12-MSE                                          60-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Ferritin-like (533)

Superfamily: Ferritin-like (489)

Family: Ferritin (232)

Protein domain: automated matches (70)

Vibrio cholerae [TaxId: 243277] (1)

1a	d3qz3a_	A:
1b	d3qz3b_	B:
1c	d3qz3c_	C:

(no "CATH Domain" information available for 3QZ3)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Ferritin (185)

Family: Ferritin (83)

Vibrio cholerae (1)

1a	Ferritin-3qz3C01	C:13-150
1b	Ferritin-3qz3C02	C:13-150
1c	Ferritin-3qz3C03	C:13-150

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (Q9KVR1_VIBCH | Q9KVR1)

molecular function
	GO:0008199	ferric iron binding	Interacting selectively and non-covalently with ferric iron, Fe(III).
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0006879	cellular iron ion homeostasis	Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
	GO:0006880	intracellular sequestering of iron ion	The process of binding or confining iron ions in an intracellular area such that they are separated from other components of a biological system.
	GO:0006826	iron ion transport	The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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Ligands, Modified Residues, Ions (2, 19)

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